Rroxscaffold_4G00315210

Wall-associated receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000480
Physical Location & Seq
Reverse (-)
39406705 .. 39412456
5752 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00315210.1

Sequence Viewer

Length: 432 bp
ATGGCCATTCACGGATCTGTACTATCCATTCACCATGCCTATCTCTCACCAGCACCTATTCCTCTCCCAAAGCCTCAAATTATCCACCCAAAACAACGCCACACTTCTCTTCCACCTCGGGATCGGACCCCTCTCCAACCTAACCCTTCACACCCCTTCCTCGGCATCACCGAGCCCCACCGTTACGCCTTCCTCACCGTCAAACCACCACCACCCCAATTAGGTCGCTGGGCTCGGAGTTTGATCAGTCCAAGGCTCCGATGCTCCGGCTTCCAATTACATGGCATGGTACCAGATCGAACGTTCTCGGAAGCTTTGGGGCTCACTTTTGAGGAGACAGTCTTTCTTGCTTCAATGGAAGAAGCTTGGATGAATCAAATTCTTGATGATGACATAGTGAATGAGGGAAACATTGAGAGTTTGAGACGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

143

Amino Acids

16.18

Weight (kDa)

8.04

Isoelectric Point (pI)

69.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 289
AccB1I GGYRCC 1 cut(s) 289
AclI AACGTT 1 cut(s) 302
AclWI GGATC 2 cut(s) 22, 129
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 378
AfaI GTAC 2 cut(s) 21, 291
AfiI CCNNNNNNNGG 2 cut(s) 161, 221
AgsI TTSAA 1 cut(s) 354
AluBI AGCT 2 cut(s) 314, 365
AluI AGCT 2 cut(s) 314, 365
Alw26I GTCTC 2 cut(s) 329, 418
AlwI GGATC 2 cut(s) 22, 129
Ama87I CYCGRG 1 cut(s) 117
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 1 cut(s) 378
Asp718I GGTACC 1 cut(s) 289
AspS9I GGNCC 1 cut(s) 126
AsuHPI GGTGA 4 cut(s) 23, 39, 160, 187
AvaI CYCGRG 1 cut(s) 117
AvaII GGWCC 1 cut(s) 126
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 289
BanII GRGCYC 3 cut(s) 177, 235, 324
BclI TGATCA 1 cut(s) 243
BcoDI GTCTC 2 cut(s) 329, 418
Bme18I GGWCC 1 cut(s) 126
BmeT110I CYCGRG 1 cut(s) 117
BmgT120I GGNCC 1 cut(s) 126
BmiI GGNNCC 3 cut(s) 128, 257, 291
BmsI GCATC 2 cut(s) 174, 251
BsaJI CCNNGG 3 cut(s) 116, 160, 251
Bsc4I CCNNNNNNNGG 2 cut(s) 161, 221
BseDI CCNNGG 3 cut(s) 116, 160, 251
BseGI GGATG 1 cut(s) 375
BseLI CCNNNNNNNGG 2 cut(s) 161, 221
BseRI GAGGAG 1 cut(s) 347
BseYI CCCAGC 1 cut(s) 228
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 289
BsiHKCI CYCGRG 1 cut(s) 117
BsiSI CCGG 1 cut(s) 267
BslI CCNNNNNNNGG 2 cut(s) 161, 221
BsmAI GTCTC 2 cut(s) 329, 418
BsmBI CGTCTC 1 cut(s) 418
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 117
Bsp1286I GDGCHC 3 cut(s) 177, 235, 324
Bsp143I GATC 4 cut(s) 14, 121, 243, 295
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 3 cut(s) 128, 257, 291
BspPI GGATC 2 cut(s) 22, 129
BspT107I GGYRCC 1 cut(s) 289
BssECI CCNNGG 3 cut(s) 116, 160, 251
BssMI GATC 4 cut(s) 14, 121, 243, 295
BssT1I CCWWGG 1 cut(s) 251
Bst4CI ACNGT 4 cut(s) 182, 199, 340, 429
Bst6I CTCTTC 1 cut(s) 114
BstF5I GGATG 1 cut(s) 375
BstKTI GATC 4 cut(s) 17, 124, 246, 298
BstMAI GTCTC 2 cut(s) 329, 418
BstMBI GATC 4 cut(s) 14, 121, 243, 295
BstX2I RGATCY 1 cut(s) 14
BstXI CCANNNNNNTGG 1 cut(s) 281
BstYI RGATCY 1 cut(s) 14
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 375
Cfr13I GGNCC 1 cut(s) 126
Csp6I GTAC 2 cut(s) 20, 290
CviAII CATG 3 cut(s) 35, 281, 286
CviJI RGCY 9 cut(s) 5, 73, 175, 233, 256, 270, 314, 322, 365
CviKI_1 RGCY 9 cut(s) 5, 73, 175, 233, 256, 270, 314, 322, 365
CviQI GTAC 2 cut(s) 20, 290
DpnI GATC 4 cut(s) 16, 123, 245, 297
DpnII GATC 4 cut(s) 14, 121, 243, 295
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 251
Eco24I GRGCYC 3 cut(s) 177, 235, 324
Eco47I GGWCC 1 cut(s) 126
Eco88I CYCGRG 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 251
EcoT38I GRGCYC 3 cut(s) 177, 235, 324
ErhI CCWWGG 1 cut(s) 251
Esp3I CGTCTC 1 cut(s) 418
FaeI CATG 3 cut(s) 38, 284, 289
FaiI YATR 4 cut(s) 36, 282, 287, 395
FatI CATG 3 cut(s) 34, 280, 285
FbaI TGATCA 1 cut(s) 243
FokI GGATG 1 cut(s) 382
FriOI GRGCYC 3 cut(s) 177, 235, 324
GsaI CCCAGC 1 cut(s) 232
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 267
Hin1II CATG 3 cut(s) 38, 284, 289
HindIII AAGCTT 2 cut(s) 312, 363
HinfI GANTC 1 cut(s) 373
HpaII CCGG 1 cut(s) 267
HphI GGTGA 4 cut(s) 23, 39, 160, 187
Hpy188I TCNGA 4 cut(s) 126, 237, 260, 310
Hpy188III TCNNGA 2 cut(s) 119, 383
HpyAV CCTTC 3 cut(s) 156, 166, 199
HpyCH4III ACNGT 4 cut(s) 182, 199, 340, 429
HpyCH4IV ACGT 1 cut(s) 302
HpySE526I ACGT 1 cut(s) 302
Hsp92II CATG 3 cut(s) 38, 284, 289
KpnI GGTACC 1 cut(s) 293
Ksp22I TGATCA 1 cut(s) 243
Kzo9I GATC 4 cut(s) 14, 121, 243, 295
LmnI GCTCC 2 cut(s) 261, 269
LpnPI CCDG 4 cut(s) 63, 214, 280, 306
LweI GCATC 2 cut(s) 174, 251
MaeII ACGT 1 cut(s) 302
MaeIII GTNAC 1 cut(s) 182
MalI GATC 4 cut(s) 16, 123, 245, 297
MboI GATC 4 cut(s) 14, 121, 243, 295
MboII GAAGA 2 cut(s) 101, 371
MflI RGATCY 1 cut(s) 14
MhlI GDGCHC 3 cut(s) 177, 235, 324
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 78, 218, 275, 378
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 8 cut(s) 72, 84, 126, 141, 170, 203, 325, 397
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 267
NdeII GATC 4 cut(s) 14, 121, 243, 295
NlaIII CATG 3 cut(s) 38, 284, 289
NlaIV GGNNCC 3 cut(s) 128, 257, 291
NmeAIII GCCGAG 1 cut(s) 141
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PfeI GAWTC 1 cut(s) 373
Psp1406I AACGTT 1 cut(s) 302
PspFI CCCAGC 1 cut(s) 228
PspN4I GGNNCC 3 cut(s) 128, 257, 291
PspPI GGNCC 1 cut(s) 126
PsuI RGATCY 1 cut(s) 14
RsaI GTAC 2 cut(s) 21, 291
RsaNI GTAC 2 cut(s) 20, 290
Sau3AI GATC 4 cut(s) 14, 121, 243, 295
Sau96I GGNCC 1 cut(s) 126
SduI GDGCHC 3 cut(s) 177, 235, 324
SetI ASST 7 cut(s) 58, 118, 142, 226, 305, 316, 367
SfaNI GCATC 2 cut(s) 174, 251
SinI GGWCC 1 cut(s) 126
Sse9I AATT 4 cut(s) 78, 218, 275, 378
StyI CCWWGG 1 cut(s) 251
TaaI ACNGT 4 cut(s) 182, 199, 340, 429
TaiI ACGT 1 cut(s) 305
TaqI TCGA 1 cut(s) 298
TasI AATT 4 cut(s) 78, 218, 275, 378
TatI WGTACW 1 cut(s) 19
TfiI GAWTC 1 cut(s) 373
TspDTI ATGAA 1 cut(s) 386
TspGWI ACGGA 1 cut(s) 27
VpaK11BI GGWCC 1 cut(s) 126
XapI RAATTY 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.