Rroxscaffold_3G00225760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000480
Physical Location & Seq
Forward (+)
9042320 .. 9042802
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00225760.1

Sequence Viewer

Length: 237 bp
ATGGGTGGAAACCTAGGGCTCGATGATTACCGGTTGGCGCTCTCTCGAATTGGACCTCCTTCCCCGAGGGCTTTCGCGGATGATCTCGCTTACAAACCTTCCCAAGCGAAGGCCAAAATTCCACTAATCCGTGTGGAGTGGCCGGAGCGTCATCTTGTTGGACGCGAGAGGTATCCCTCTTTGTCTCCATGGCTCCACAAAGGAAACAACTCCGTATCATTTTCAACTCCCCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.7

Weight (kDa)

9.86

Isoelectric Point (pI)

36.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 77, 165
AciI CCGC 1 cut(s) 77
AcoI YGGCCR 1 cut(s) 140
AcsI RAATTY 1 cut(s) 117
AfiI CCNNNNNNNGG 1 cut(s) 109
AgeI ACCGGT 1 cut(s) 30
AgsI TTSAA 1 cut(s) 225
Alw26I GTCTC 1 cut(s) 189
Ama87I CYCGRG 1 cut(s) 64
AoxI GGCC 2 cut(s) 111, 140
ApoI RAATTY 1 cut(s) 117
AsiGI ACCGGT 1 cut(s) 30
AspA2I CCTAGG 1 cut(s) 13
AspLEI GCGC 1 cut(s) 40
AspS9I GGNCC 1 cut(s) 53
AvaI CYCGRG 1 cut(s) 64
AvaII GGWCC 1 cut(s) 53
AvrII CCTAGG 1 cut(s) 13
BanII GRGCYC 1 cut(s) 21
BciVI GTATCC 1 cut(s) 183
BcoDI GTCTC 1 cut(s) 189
BfaI CTAG 1 cut(s) 14
BfoI RGCGCY 1 cut(s) 41
BfuI GTATCC 1 cut(s) 183
BlnI CCTAGG 1 cut(s) 13
Bme18I GGWCC 1 cut(s) 53
BmeT110I CYCGRG 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 1 cut(s) 194
BsaJI CCNNGG 3 cut(s) 13, 65, 188
BsaWI WCCGGW 1 cut(s) 30
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse118I RCCGGY 1 cut(s) 30
BseDI CCNNGG 3 cut(s) 13, 65, 188
BseGI GGATG 1 cut(s) 85
BseLI CCNNNNNNNGG 1 cut(s) 109
Bsh1236I CGCG 2 cut(s) 77, 165
BshFI GGCC 2 cut(s) 113, 142
BshTI ACCGGT 1 cut(s) 30
BsiHKCI CYCGRG 1 cut(s) 64
BsiSI CCGG 2 cut(s) 31, 143
BslI CCNNNNNNNGG 1 cut(s) 109
BsmAI GTCTC 1 cut(s) 189
BsnI GGCC 2 cut(s) 113, 142
BsoBI CYCGRG 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 1 cut(s) 82
Bsp19I CCATGG 1 cut(s) 188
BspACI CCGC 1 cut(s) 77
BspANI GGCC 2 cut(s) 113, 142
BspFNI CGCG 2 cut(s) 77, 165
BspLI GGNNCC 1 cut(s) 194
BsrFI RCCGGY 1 cut(s) 30
BssAI RCCGGY 1 cut(s) 30
BssECI CCNNGG 3 cut(s) 13, 65, 188
BssMI GATC 1 cut(s) 82
BssT1I CCWWGG 2 cut(s) 13, 188
BstDSI CCRYGG 1 cut(s) 188
BstF5I GGATG 1 cut(s) 85
BstFNI CGCG 2 cut(s) 77, 165
BstH2I RGCGCY 1 cut(s) 41
BstHHI GCGC 1 cut(s) 40
BstKTI GATC 1 cut(s) 85
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 1 cut(s) 82
BstUI CGCG 2 cut(s) 77, 165
BsuI GTATCC 1 cut(s) 183
BsuRI GGCC 2 cut(s) 113, 142
BtgI CCRYGG 1 cut(s) 188
BtsCI GGATG 1 cut(s) 85
CfoI GCGC 1 cut(s) 40
Cfr10I RCCGGY 1 cut(s) 30
Cfr13I GGNCC 1 cut(s) 53
CseI GACGC 2 cut(s) 137, 171
CspAI ACCGGT 1 cut(s) 30
CviAII CATG 1 cut(s) 189
CviJI RGCY 5 cut(s) 19, 71, 113, 142, 193
CviKI_1 RGCY 5 cut(s) 19, 71, 113, 142, 193
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
EaeI YGGCCR 1 cut(s) 140
Eco130I CCWWGG 2 cut(s) 13, 188
Eco24I GRGCYC 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 53
Eco88I CYCGRG 1 cut(s) 64
EcoT14I CCWWGG 2 cut(s) 13, 188
EcoT38I GRGCYC 1 cut(s) 21
ErhI CCWWGG 2 cut(s) 13, 188
FaeI CATG 1 cut(s) 192
FaiI YATR 1 cut(s) 190
FatI CATG 1 cut(s) 188
FokI GGATG 1 cut(s) 92
FriOI GRGCYC 1 cut(s) 21
FspBI CTAG 1 cut(s) 14
GlaI GCGC 1 cut(s) 39
HaeII RGCGCY 1 cut(s) 41
HaeIII GGCC 2 cut(s) 113, 142
HapII CCGG 2 cut(s) 31, 143
HgaI GACGC 2 cut(s) 137, 171
HhaI GCGC 1 cut(s) 40
Hin1II CATG 1 cut(s) 192
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HpaII CCGG 2 cut(s) 31, 143
Hpy188III TCNNGA 1 cut(s) 45
HpyAV CCTTC 3 cut(s) 69, 103, 108
Hsp92II CATG 1 cut(s) 192
HspAI GCGC 1 cut(s) 38
Kzo9I GATC 1 cut(s) 82
LmnI GCTCC 2 cut(s) 145, 198
LpnPI CCDG 2 cut(s) 44, 156
MaeI CTAG 1 cut(s) 14
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 2 cut(s) 48, 117
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 4 cut(s) 60, 66, 162, 187
MspI CCGG 2 cut(s) 31, 143
MvnI CGCG 2 cut(s) 77, 165
NcoI CCATGG 1 cut(s) 188
NdeII GATC 1 cut(s) 82
NlaIII CATG 1 cut(s) 192
NlaIV GGNNCC 1 cut(s) 194
PinAI ACCGGT 1 cut(s) 30
PspN4I GGNNCC 1 cut(s) 194
PspPI GGNCC 1 cut(s) 53
Sau3AI GATC 1 cut(s) 82
Sau96I GGNCC 1 cut(s) 53
SduI GDGCHC 1 cut(s) 21
SetI ASST 4 cut(s) 15, 58, 100, 173
SinI GGWCC 1 cut(s) 53
Sse9I AATT 2 cut(s) 48, 117
SsiI CCGC 1 cut(s) 77
SspMI CTAG 1 cut(s) 14
StyI CCWWGG 2 cut(s) 13, 188
TaqI TCGA 2 cut(s) 21, 46
TasI AATT 2 cut(s) 48, 117
TspGWI ACGGA 2 cut(s) 119, 202
VpaK11BI GGWCC 1 cut(s) 53
XapI RAATTY 1 cut(s) 117
XmaJI CCTAGG 1 cut(s) 13
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.