Rmu_sc0008084.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008084.1
OG0000480
Physical Location & Seq
Reverse (-)
3055 .. 3796
742 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008084.1_g000003.1.cds

Sequence Viewer

Length: 660 bp
ctggaattgcgatttaagaagcgtgataattctttcgtcacggccgtagaatccttagactccaacggtttggcggcgtcagccattgccggtgccttggcgacatcgaatccaagatcgggtaggcctcccaagagcgctatggagttctatgacgacctatgctcctctcaactcgatgccctcatggcgtctcatcgttttttacgcagtctcgacgctcttcattctaggcagcaacaacgccttgagaaagccgaccaagagataaaatccaaggagaaggagctcaatgaccaaatggagtcaatgacacagctgagcctcatcctcgaagaccgaaatcgcgaggtagcgatgttaaaaaatgatttggctttggtaactcgaagtaaagacgaggagttcgaaaagggggtcgctaagatgaagcgtgtgtccgccaaacatttccggctcggatggaaccaggccttgactaaagaagatgatagatgctacgtagggccggacgaattcgatcgcttctatgggtttgcccccagggactattctcccattcgtggtatgctaccgggggatgctccttcgtcggcgtcaagtgcttccgaggggctccgcggcgaagacgaagtgtcctctcttccttgctccaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

24.5

Weight (kDa)

5.77

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 92
AccII CGCG 2 cut(s) 348, 621
AciI CCGC 4 cut(s) 74, 441, 619, 621
AcoI YGGCCR 1 cut(s) 42
AcsI RAATTY 1 cut(s) 515
AcyI GRCGYC 3 cut(s) 77, 191, 596
AfeI AGCGCT 1 cut(s) 139
AfiI CCNNNNNNNGG 2 cut(s) 119, 563
AhdI GACNNNNNGTC 1 cut(s) 634
AjnI CCWGG 2 cut(s) 468, 542
AluBI AGCT 2 cut(s) 289, 319
AluI AGCT 2 cut(s) 289, 319
Alw21I GWGCWC 1 cut(s) 291
Alw26I GTCTC 2 cut(s) 198, 218
Aor51HI AGCGCT 1 cut(s) 139
AoxI GGCC 4 cut(s) 42, 125, 471, 506
ApeKI GCWGC 1 cut(s) 235
ApoI RAATTY 1 cut(s) 515
ArsI GACNNNNNNTTYG 4 cut(s) 389, 402, 421, 434
AspLEI GCGC 1 cut(s) 140
AspS9I GGNCC 1 cut(s) 506
AsuC2I CCSGG 1 cut(s) 576
AsuII TTCGAA 1 cut(s) 408
BanI GGYRCC 1 cut(s) 92
BanII GRGCYC 2 cut(s) 291, 618
BbsI GAAGAC 2 cut(s) 342, 633
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 1 cut(s) 247
BccI CCATC 1 cut(s) 456
BceAI ACGGC 2 cut(s) 29, 57
BciT130I CCWGG 2 cut(s) 470, 544
BcnI CCSGG 1 cut(s) 576
BcoDI GTCTC 2 cut(s) 198, 218
BfaI CTAG 1 cut(s) 231
BfoI RGCGCY 1 cut(s) 141
BglI GCCNNNNNGGC 1 cut(s) 188
BisI GCNGC 3 cut(s) 75, 236, 622
BlpI GCTNAGC 1 cut(s) 320
BlsI GCNGC 3 cut(s) 76, 237, 623
Bme1390I CCNGG 3 cut(s) 470, 544, 576
BmeRI GACNNNNNGTC 1 cut(s) 634
BmgT120I GGNCC 1 cut(s) 506
BmiI GGNNCC 3 cut(s) 94, 467, 617
BmrFI CCNGG 3 cut(s) 470, 544, 576
BmsI GCATC 3 cut(s) 169, 485, 571
BpiI GAAGAC 2 cut(s) 342, 633
Bpu1102I GCTNAGC 1 cut(s) 320
Bpu14I TTCGAA 1 cut(s) 408
BpuEI CTTGAG 1 cut(s) 269
BpuMI CCSGG 1 cut(s) 576
BsaAI YACGTR 1 cut(s) 502
BsaHI GRCGYC 3 cut(s) 77, 191, 596
BsaJI CCNNGG 7 cut(s) 96, 276, 542, 543, 575, 609, 619
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 563
Bse118I RCCGGY 1 cut(s) 89
Bse3DI GCAATG 1 cut(s) 84
BseBI CCWGG 2 cut(s) 470, 544
BseDI CCNNGG 7 cut(s) 96, 276, 542, 543, 575, 609, 619
BseGI GGATG 3 cut(s) 327, 467, 586
BseLI CCNNNNNNNGG 2 cut(s) 119, 563
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 1 cut(s) 311
BseRI GAGGAG 2 cut(s) 157, 416
BseX3I CGGCCG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 247
Bsh1236I CGCG 2 cut(s) 348, 621
Bsh1285I CGRYCG 2 cut(s) 45, 523
BshFI GGCC 4 cut(s) 44, 127, 473, 508
BshNI GGYRCC 1 cut(s) 92
BsiEI CGRYCG 2 cut(s) 45, 523
BsiHKAI GWGCWC 1 cut(s) 291
BsiSI CCGG 4 cut(s) 90, 454, 509, 575
BslFI GGGAC 1 cut(s) 560
BslI CCNNNNNNNGG 2 cut(s) 119, 563
BsmAI GTCTC 2 cut(s) 198, 218
BsmBI CGTCTC 1 cut(s) 198
BsmFI GGGAC 1 cut(s) 560
BsnI GGCC 4 cut(s) 44, 127, 473, 508
Bsp119I TTCGAA 1 cut(s) 408
Bsp1286I GDGCHC 2 cut(s) 291, 618
Bsp143I GATC 2 cut(s) 116, 520
Bsp1720I GCTNAGC 1 cut(s) 320
Bsp68I TCGCGA 1 cut(s) 348
BspACI CCGC 4 cut(s) 74, 441, 619, 621
BspANI GGCC 4 cut(s) 44, 127, 473, 508
BspCNI CTCAG 1 cut(s) 312
BspFNI CGCG 2 cut(s) 348, 621
BspLI GGNNCC 3 cut(s) 94, 467, 617
BspQI GCTCTTC 1 cut(s) 228
BspT104I TTCGAA 1 cut(s) 408
BspT107I GGYRCC 1 cut(s) 92
BsrDI GCAATG 1 cut(s) 84
BsrFI RCCGGY 1 cut(s) 89
BssAI RCCGGY 1 cut(s) 89
BssECI CCNNGG 7 cut(s) 96, 276, 542, 543, 575, 609, 619
BssMI GATC 2 cut(s) 116, 520
BssNI GRCGYC 3 cut(s) 77, 191, 596
BssT1I CCWWGG 2 cut(s) 96, 276
Bst2UI CCWGG 2 cut(s) 470, 544
Bst4CI ACNGT 1 cut(s) 68
Bst6I CTCTTC 2 cut(s) 228, 648
BstACI GRCGYC 3 cut(s) 77, 191, 596
BstBAI YACGTR 1 cut(s) 502
BstBI TTCGAA 1 cut(s) 408
BstDEI CTNAG 3 cut(s) 55, 320, 423
BstDSI CCRYGG 1 cut(s) 619
BstF5I GGATG 3 cut(s) 327, 467, 586
BstFNI CGCG 2 cut(s) 348, 621
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 2 cut(s) 119, 523
BstMAI GTCTC 2 cut(s) 198, 218
BstMBI GATC 2 cut(s) 116, 520
BstMCI CGRYCG 2 cut(s) 45, 523
BstMWI GCNNNNNNNGC 3 cut(s) 80, 188, 602
BstNI CCWGG 2 cut(s) 470, 544
BstSCI CCNGG 3 cut(s) 468, 542, 574
BstSNI TACGTA 1 cut(s) 502
BstUI CGCG 2 cut(s) 348, 621
BstV1I GCAGC 1 cut(s) 247
BstV2I GAAGAC 2 cut(s) 342, 633
BstXI CCANNNNNNTGG 1 cut(s) 70
BstZI CGGCCG 1 cut(s) 42
BsuRI GGCC 4 cut(s) 44, 127, 473, 508
BtgI CCRYGG 1 cut(s) 619
BtgZI GCGATG 1 cut(s) 371
BtsCI GGATG 3 cut(s) 327, 467, 586
BtuMI TCGCGA 1 cut(s) 348
CfoI GCGC 1 cut(s) 140
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 1 cut(s) 506
Cfr42I CCGCGG 1 cut(s) 622
CseI GACGC 4 cut(s) 66, 180, 227, 585
CviAII CATG 1 cut(s) 187
DdeI CTNAG 3 cut(s) 55, 320, 423
DpnI GATC 2 cut(s) 118, 522
DpnII GATC 2 cut(s) 116, 520
DriI GACNNNNNGTC 1 cut(s) 634
EaeI YGGCCR 1 cut(s) 42
EagI CGGCCG 1 cut(s) 42
Eam1104I CTCTTC 2 cut(s) 228, 648
Eam1105I GACNNNNNGTC 1 cut(s) 634
EarI CTCTTC 2 cut(s) 228, 648
EciI GGCGGA 1 cut(s) 430
Ecl136II GAGCTC 1 cut(s) 289
EclXI CGGCCG 1 cut(s) 42
Eco105I TACGTA 1 cut(s) 502
Eco130I CCWWGG 2 cut(s) 96, 276
Eco147I AGGCCT 2 cut(s) 127, 473
Eco24I GRGCYC 2 cut(s) 291, 618
Eco47III AGCGCT 1 cut(s) 139
Eco52I CGGCCG 1 cut(s) 42
Eco53kI GAGCTC 1 cut(s) 289
EcoICRI GAGCTC 1 cut(s) 289
EcoRI GAATTC 1 cut(s) 515
EcoRII CCWGG 2 cut(s) 468, 542
EcoT14I CCWWGG 2 cut(s) 96, 276
EcoT38I GRGCYC 2 cut(s) 291, 618
ErhI CCWWGG 2 cut(s) 96, 276
Esp3I CGTCTC 1 cut(s) 198
FaeI CATG 1 cut(s) 190
FaiI YATR 6 cut(s) 143, 153, 163, 188, 531, 569
FaqI GGGAC 1 cut(s) 560
FatI CATG 1 cut(s) 186
Fnu4HI GCNGC 3 cut(s) 75, 236, 622
FokI GGATG 3 cut(s) 314, 474, 593
FriOI GRGCYC 2 cut(s) 291, 618
Fsp4HI GCNGC 3 cut(s) 75, 236, 622
FspBI CTAG 1 cut(s) 231
GlaI GCGC 1 cut(s) 139
GluI GCNGC 3 cut(s) 75, 236, 622
HaeII RGCGCY 1 cut(s) 141
HaeIII GGCC 4 cut(s) 44, 127, 473, 508
HapII CCGG 4 cut(s) 90, 454, 509, 575
HgaI GACGC 4 cut(s) 66, 180, 227, 585
HhaI GCGC 1 cut(s) 140
Hin1I GRCGYC 3 cut(s) 77, 191, 596
Hin1II CATG 1 cut(s) 190
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HinfI GANTC 4 cut(s) 50, 59, 109, 305
HpaII CCGG 4 cut(s) 90, 454, 509, 575
Hpy188I TCNGA 2 cut(s) 461, 610
Hpy188III TCNNGA 2 cut(s) 215, 347
Hpy99I CGWCG 2 cut(s) 221, 595
HpyAV CCTTC 2 cut(s) 277, 597
HpyCH4III ACNGT 1 cut(s) 68
HpyCH4IV ACGT 1 cut(s) 501
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 188, 602
HpyF3I CTNAG 3 cut(s) 55, 320, 423
HpySE526I ACGT 1 cut(s) 501
Hsp92I GRCGYC 3 cut(s) 77, 191, 596
Hsp92II CATG 1 cut(s) 190
HspAI GCGC 1 cut(s) 138
KspI CCGCGG 1 cut(s) 622
Kzo9I GATC 2 cut(s) 116, 520
LguI GCTCTTC 1 cut(s) 228
LmnI GCTCC 5 cut(s) 170, 286, 589, 621, 656
LpnPI CCDG 8 cut(s) 103, 455, 467, 482, 522, 529, 556, 588
Lsp1109I GCAGC 1 cut(s) 247
LweI GCATC 3 cut(s) 169, 485, 571
MaeI CTAG 1 cut(s) 231
MaeII ACGT 1 cut(s) 501
MaeIII GTNAC 2 cut(s) 37, 382
MalI GATC 2 cut(s) 118, 522
MboI GATC 2 cut(s) 116, 520
MboII GAAGA 5 cut(s) 215, 347, 497, 635, 638
MhlI GDGCHC 2 cut(s) 291, 618
MluCI AATT 3 cut(s) 5, 28, 515
MlyI GAGTC 2 cut(s) 53, 314
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 9 cut(s) 138, 178, 194, 335, 341, 343, 394, 604, 649
MseI TTAA 2 cut(s) 15, 362
MspA1I CMGCKG 2 cut(s) 319, 621
MspI CCGG 4 cut(s) 90, 454, 509, 575
MspR9I CCNGG 3 cut(s) 470, 544, 576
MvaI CCWGG 2 cut(s) 470, 544
MvnI CGCG 2 cut(s) 348, 621
MwoI GCNNNNNNNGC 3 cut(s) 80, 188, 602
NciI CCSGG 1 cut(s) 576
NdeII GATC 2 cut(s) 116, 520
NlaIII CATG 1 cut(s) 190
NlaIV GGNNCC 3 cut(s) 94, 467, 617
NmuCI GTSAC 1 cut(s) 37
NruI TCGCGA 1 cut(s) 348
NspV TTCGAA 1 cut(s) 408
PasI CCCWGGG 1 cut(s) 543
PceI AGGCCT 2 cut(s) 127, 473
PciSI GCTCTTC 1 cut(s) 228
PcsI WCGNNNNNNNCGW 2 cut(s) 42, 405
PfeI GAWTC 2 cut(s) 50, 109
PkrI GCNGC 3 cut(s) 76, 237, 623
Ple19I CGATCG 1 cut(s) 523
PleI GAGTC 2 cut(s) 53, 313
PpsI GAGTC 2 cut(s) 53, 313
Ppu21I YACGTR 1 cut(s) 502
Psp124BI GAGCTC 1 cut(s) 291
Psp6I CCWGG 2 cut(s) 468, 542
PspGI CCWGG 2 cut(s) 468, 542
PspN4I GGNNCC 3 cut(s) 94, 467, 617
PspPI GGNCC 1 cut(s) 506
PvuI CGATCG 1 cut(s) 523
PvuII CAGCTG 1 cut(s) 319
RruI TCGCGA 1 cut(s) 348
SacI GAGCTC 1 cut(s) 291
SacII CCGCGG 1 cut(s) 622
SapI GCTCTTC 1 cut(s) 228
SaqAI TTAA 2 cut(s) 15, 362
SatI GCNGC 3 cut(s) 75, 236, 622
Sau3AI GATC 2 cut(s) 116, 520
Sau96I GGNCC 1 cut(s) 506
SchI GAGTC 2 cut(s) 53, 314
ScrFI CCNGG 3 cut(s) 470, 544, 576
SduI GDGCHC 2 cut(s) 291, 618
SetI ASST 5 cut(s) 162, 291, 321, 354, 504
SfaNI GCATC 3 cut(s) 169, 485, 571
Sfr303I CCGCGG 1 cut(s) 622
SfuI TTCGAA 1 cut(s) 408
SgrBI CCGCGG 1 cut(s) 622
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
SnaBI TACGTA 1 cut(s) 502
Sse9I AATT 3 cut(s) 5, 28, 515
SseBI AGGCCT 2 cut(s) 127, 473
SsiI CCGC 4 cut(s) 74, 441, 619, 621
SspMI CTAG 1 cut(s) 231
SstI GAGCTC 1 cut(s) 291
StuI AGGCCT 2 cut(s) 127, 473
StyD4I CCNGG 3 cut(s) 468, 542, 574
StyI CCWWGG 2 cut(s) 96, 276
TaaI ACNGT 1 cut(s) 68
TaiI ACGT 1 cut(s) 504
TaqI TCGA 7 cut(s) 107, 177, 216, 333, 388, 408, 519
TaqII GACCGA 1 cut(s) 354
TasI AATT 3 cut(s) 5, 28, 515
TauI GCSGC 2 cut(s) 77, 624
TfiI GAWTC 2 cut(s) 50, 109
Tru1I TTAA 2 cut(s) 15, 362
Tru9I TTAA 2 cut(s) 15, 362
TseFI GTSAC 1 cut(s) 37
TseI GCWGC 1 cut(s) 235
Tsp45I GTSAC 1 cut(s) 37
TspDTI ATGAA 2 cut(s) 215, 443
XapI RAATTY 1 cut(s) 515
XcmI CCANNNNNNNNNTGG 1 cut(s) 139
XspI CTAG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.