Rmu_co8463157.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8463157.1
OG0000480
Physical Location & Seq
Reverse (-)
1359 .. 1721
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8463157.1_g000003.1.cds

Sequence Viewer

Length: 363 bp
atgagtactgacaggggaacaagtcctgaatcccatcgtctccgtactttgagagaggaatcttttgtgctacaggattcgcttgagcatgccctgtcggaggcccgcaatctgaaggctgaggtccataacctgtcgctggagcttcaacgctcgagggaccatgcagagtgtctgaaagtagagctccgcgaatgttaccgacgagaaagttttctggacgaggtccgcgttcaaagtcgtgaagatggatatcgcgatgccgtcatcgaataccgacaacgcatgatactgaactttcccaggatagatgagtcccttttgccatactatatgggctctgatggcacctcccgaaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

14.2

Weight (kDa)

5.6

Isoelectric Point (pI)

76.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 347
AccII CGCG 3 cut(s) 192, 231, 258
AciI CCGC 3 cut(s) 106, 190, 229
AcuI CTGAAG 1 cut(s) 134
AfaI GTAC 2 cut(s) 7, 46
AfiI CCNNNNNNNGG 2 cut(s) 100, 139
AgsI TTSAA 2 cut(s) 149, 236
AjnI CCWGG 1 cut(s) 302
AluBI AGCT 2 cut(s) 145, 187
AluI AGCT 2 cut(s) 145, 187
Alw21I GWGCWC 1 cut(s) 189
Alw26I GTCTC 1 cut(s) 44
Ama87I CYCGRG 1 cut(s) 154
AoxI GGCC 1 cut(s) 102
Asp700I GAANNNNTTC 1 cut(s) 213
AspS9I GGNCC 4 cut(s) 103, 124, 160, 226
AvaI CYCGRG 1 cut(s) 154
AvaII GGWCC 3 cut(s) 124, 160, 226
BanI GGYRCC 1 cut(s) 347
BanII GRGCYC 2 cut(s) 189, 341
Bbv12I GWGCWC 1 cut(s) 189
BbvCI CCTCAGC 1 cut(s) 120
BccI CCATC 3 cut(s) 42, 242, 338
BceAI ACGGC 1 cut(s) 248
BciT130I CCWGG 1 cut(s) 304
BcoDI GTCTC 1 cut(s) 44
BfmI CTRYAG 1 cut(s) 71
BmcAI AGTACT 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 304
Bme18I GGWCC 3 cut(s) 124, 160, 226
BmeT110I CYCGRG 1 cut(s) 154
BmgT120I GGNCC 4 cut(s) 103, 124, 160, 226
BmiI GGNNCC 2 cut(s) 161, 349
BmrFI CCNGG 1 cut(s) 304
BmsI GCATC 1 cut(s) 250
BpmI CTGGAG 1 cut(s) 161
Bpu10I CCTNAGC 1 cut(s) 120
BpuEI CTTGAG 1 cut(s) 104
BsaBI GATNNNNATC 1 cut(s) 252
BsaJI CCNNGG 1 cut(s) 302
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 139
Bse8I GATNNNNATC 1 cut(s) 252
BseBI CCWGG 1 cut(s) 304
BseDI CCNNGG 1 cut(s) 302
BseJI GATNNNNATC 1 cut(s) 252
BseLI CCNNNNNNNGG 2 cut(s) 100, 139
BseMII CTCAG 1 cut(s) 111
Bsh1236I CGCG 3 cut(s) 192, 231, 258
BshFI GGCC 1 cut(s) 104
BshNI GGYRCC 1 cut(s) 347
BsiHKAI GWGCWC 1 cut(s) 189
BsiHKCI CYCGRG 1 cut(s) 154
BslFI GGGAC 2 cut(s) 173, 301
BslI CCNNNNNNNGG 2 cut(s) 100, 139
BsmAI GTCTC 1 cut(s) 44
BsmBI CGTCTC 1 cut(s) 44
BsmFI GGGAC 2 cut(s) 173, 301
BsnI GGCC 1 cut(s) 104
BsoBI CYCGRG 1 cut(s) 154
Bsp1286I GDGCHC 2 cut(s) 189, 341
Bsp68I TCGCGA 1 cut(s) 258
BspACI CCGC 3 cut(s) 106, 190, 229
BspANI GGCC 1 cut(s) 104
BspCNI CTCAG 1 cut(s) 112
BspFNI CGCG 3 cut(s) 192, 231, 258
BspLI GGNNCC 2 cut(s) 161, 349
BspT107I GGYRCC 1 cut(s) 347
BssECI CCNNGG 1 cut(s) 302
Bst2UI CCWGG 1 cut(s) 304
BstC8I GCNNGC 2 cut(s) 90, 106
BstDEI CTNAG 1 cut(s) 120
BstENI CCTNNNNNAGG 1 cut(s) 98
BstFNI CGCG 3 cut(s) 192, 231, 258
BstMAI GTCTC 1 cut(s) 44
BstMWI GCNNNNNNNGC 1 cut(s) 345
BstNI CCWGG 1 cut(s) 304
BstNSI RCATGY 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 302
BstSFI CTRYAG 1 cut(s) 71
BstUI CGCG 3 cut(s) 192, 231, 258
BsuRI GGCC 1 cut(s) 104
BtgZI GCGATG 1 cut(s) 273
BtuMI TCGCGA 1 cut(s) 258
Cac8I GCNNGC 2 cut(s) 90, 106
Cfr13I GGNCC 4 cut(s) 103, 124, 160, 226
Csp6I GTAC 2 cut(s) 6, 45
CviAII CATG 3 cut(s) 89, 164, 286
CviJI RGCY 5 cut(s) 104, 119, 145, 187, 339
CviKI_1 RGCY 5 cut(s) 104, 119, 145, 187, 339
CviQI GTAC 2 cut(s) 6, 45
DdeI CTNAG 1 cut(s) 120
Ecl136II GAGCTC 1 cut(s) 187
Eco24I GRGCYC 2 cut(s) 189, 341
Eco32I GATATC 1 cut(s) 254
Eco47I GGWCC 3 cut(s) 124, 160, 226
Eco53kI GAGCTC 1 cut(s) 187
Eco57I CTGAAG 1 cut(s) 134
Eco88I CYCGRG 1 cut(s) 154
EcoICRI GAGCTC 1 cut(s) 187
EcoNI CCTNNNNNAGG 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 302
EcoRV GATATC 1 cut(s) 254
EcoT38I GRGCYC 2 cut(s) 189, 341
Esp3I CGTCTC 1 cut(s) 44
FaeI CATG 3 cut(s) 92, 167, 289
FaiI YATR 7 cut(s) 90, 129, 165, 287, 328, 333, 335
FaqI GGGAC 2 cut(s) 173, 301
FatI CATG 3 cut(s) 88, 163, 285
FauI CCCGC 1 cut(s) 113
FriOI GRGCYC 2 cut(s) 189, 341
GsuI CTGGAG 1 cut(s) 161
HaeIII GGCC 1 cut(s) 104
Hin1II CATG 3 cut(s) 92, 167, 289
HinfI GANTC 4 cut(s) 29, 59, 77, 314
Hpy188I TCNGA 4 cut(s) 100, 114, 177, 343
Hpy188III TCNNGA 5 cut(s) 26, 218, 242, 257, 354
Hpy99I CGWCG 1 cut(s) 207
HpyAV CCTTC 1 cut(s) 109
HpyCH4V TGCA 1 cut(s) 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 345
HpyF3I CTNAG 1 cut(s) 120
Hsp92II CATG 3 cut(s) 92, 167, 289
LmnI GCTCC 2 cut(s) 142, 192
LpnPI CCDG 8 cut(s) 39, 59, 107, 125, 146, 203, 289, 316
LweI GCATC 1 cut(s) 250
MaeIII GTNAC 1 cut(s) 197
MboII GAAGA 1 cut(s) 257
MhlI GDGCHC 2 cut(s) 189, 341
MluCI AATT 1 cut(s) 358
MlyI GAGTC 1 cut(s) 323
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 6 cut(s) 49, 94, 115, 150, 217, 361
MroXI GAANNNNTTC 1 cut(s) 213
MspR9I CCNGG 1 cut(s) 304
MvaI CCWGG 1 cut(s) 304
MvnI CGCG 3 cut(s) 192, 231, 258
MwoI GCNNNNNNNGC 1 cut(s) 345
NlaIII CATG 3 cut(s) 92, 167, 289
NlaIV GGNNCC 2 cut(s) 161, 349
NruI TCGCGA 1 cut(s) 258
NspI RCATGY 1 cut(s) 92
PaeI GCATGC 1 cut(s) 92
PaeR7I CTCGAG 1 cut(s) 154
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 213
PfeI GAWTC 3 cut(s) 29, 59, 77
PflFI GACNNNGTC 1 cut(s) 224
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
Psp124BI GAGCTC 1 cut(s) 189
Psp6I CCWGG 1 cut(s) 302
PspGI CCWGG 1 cut(s) 302
PspN4I GGNNCC 2 cut(s) 161, 349
PspPI GGNCC 4 cut(s) 103, 124, 160, 226
PspXI VCTCGAGB 1 cut(s) 154
PsyI GACNNNGTC 1 cut(s) 224
RruI TCGCGA 1 cut(s) 258
RsaI GTAC 2 cut(s) 7, 46
RsaNI GTAC 2 cut(s) 6, 45
SacI GAGCTC 1 cut(s) 189
Sau96I GGNCC 4 cut(s) 103, 124, 160, 226
ScaI AGTACT 1 cut(s) 7
SchI GAGTC 1 cut(s) 323
ScrFI CCNGG 1 cut(s) 304
SduI GDGCHC 2 cut(s) 189, 341
SetI ASST 6 cut(s) 126, 135, 147, 189, 228, 353
SfaNI GCATC 1 cut(s) 250
SfcI CTRYAG 1 cut(s) 71
Sfr274I CTCGAG 1 cut(s) 154
SinI GGWCC 3 cut(s) 124, 160, 226
SlaI CTCGAG 1 cut(s) 154
SmlI CTYRAG 2 cut(s) 83, 154
SmoI CTYRAG 2 cut(s) 83, 154
SphI GCATGC 1 cut(s) 92
Sse9I AATT 1 cut(s) 358
SsiI CCGC 3 cut(s) 106, 190, 229
SstI GAGCTC 1 cut(s) 189
StyD4I CCNGG 1 cut(s) 302
TaqI TCGA 2 cut(s) 155, 270
TasI AATT 1 cut(s) 358
TatI WGTACW 1 cut(s) 5
TfiI GAWTC 3 cut(s) 29, 59, 77
TspGWI ACGGA 1 cut(s) 32
Tth111I GACNNNGTC 1 cut(s) 224
VpaK11BI GGWCC 3 cut(s) 124, 160, 226
XagI CCTNNNNNAGG 1 cut(s) 98
XceI RCATGY 1 cut(s) 92
XhoI CTCGAG 1 cut(s) 154
XmnI GAANNNNTTC 1 cut(s) 213
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.