Rmu_sc0000693.1_g000045

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000693.1
OG0000480
Physical Location & Seq
Forward (+)
219823 .. 220951
1129 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000693.1_g000045.1.cds

Sequence Viewer

Length: 903 bp
atgcatagaaatgcgtgtcatcacaaaccttctgatcttaaccttgtctttaacattttgcagtttcctctagccacccgcatggctcggattaagtatacagaccgagcaaaatctcaaaaaaagagtccagagccaatcaatgaacttgcgccctggaaaccaatcgcttatgaggtagagaggtatgctaaagcgtactcggtcccgaagtttatcaaactttcttccattcctgacggcgccgacatctatacaggtgagaatttgcctagagacaccctgatattgtctctttctcacctgaggttcatcagatttccgattcaccctgtcttccaacttataacaggcaagcttcaatatttcaacttttctccatacgcaaagatgaagatgttcgcaggtgtgacgatcaatcatccaggatggaggtccaaagctgtgatgatctctagcaaatggcggtccctagaattggacctcttgcctccaactgcttttgctgatgaccttgcttacaaactttccctggctaagattggtcttccctccgatcatgcaacatggttggaaagccacctcgttgggggtgactggtgtccttcccaatttgtgacaaccgggaatctagcagaggccgcatctactcgacctttagctctatttggccgttaccaggagcctgtcgaccctagacttttggggaaagagttggcgctccgtgtcgcccagattgagagcattttttcactgtctgaattttgtgagtctgtgtttgctacatatgtggaagtcaaaaatgatttatgcgccatcaacccttgcccggacaccatcgttgttgaggagatagtgtggaaggaagcttggaggaagaagaagaattcgaggctgacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

300

Amino Acids

34.09

Weight (kDa)

9.16

Isoelectric Point (pI)

42.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04502
rosa_chinensis RchiOBHm_Chr2g0159401 RchiOBHm_Chr6g0254061
rosa_laevigata RLG00000014946 RLG00000035644 RLG00000035648
rosa_multiflora Rmu_co7989044.1_g000001 Rmu_co8071304.1_g000001 Rmu_co8335039.1_g000001 Rmu_co8433837.1_g000001 Rmu_co8463157.1_g000003 Rmu_co8495873.1_g000001 Rmu_sc0000030.1_g000034 Rmu_sc0000335.1_g000030 Rmu_sc0000386.1_g000004 Rmu_sc0000419.1_g000026 Rmu_sc0000536.1_g000025 Rmu_sc0000693.1_g000045 Rmu_sc0000950.1_g000029 Rmu_sc0000950.1_g000030 Rmu_sc0001524.1_g000001 Rmu_sc0001524.1_g000002 Rmu_sc0001716.1_g000027 Rmu_sc0001744.1_g000019 Rmu_sc0002162.1_g000032 Rmu_sc0002300.1_g000003 Rmu_sc0002341.1_g000002 Rmu_sc0002480.1_g000026 Rmu_sc0002759.1_g000071 Rmu_sc0002837.1_g000002 Rmu_sc0002837.1_g000003 Rmu_sc0002986.1_g000030 Rmu_sc0002986.1_g000031 Rmu_sc0003553.1_g000001 Rmu_sc0004192.1_g000015 Rmu_sc0004322.1_g000020 Rmu_sc0004755.1_g000032 Rmu_sc0004755.1_g000034 Rmu_sc0005163.1_g000005 Rmu_sc0005507.1_g000023 Rmu_sc0005599.1_g000013 Rmu_sc0005599.1_g000014 Rmu_sc0005599.1_g000015 Rmu_sc0005947.1_g000011 Rmu_sc0006031.1_g000027 Rmu_sc0006287.1_g000035 Rmu_sc0006318.1_g000009 Rmu_sc0007355.1_g000006 Rmu_sc0007355.1_g000007 Rmu_sc0007646.1_g000003 Rmu_sc0007953.1_g000003 Rmu_sc0008084.1_g000003 Rmu_sc0009135.1_g000005 Rmu_sc0009656.1_g000001 Rmu_sc0010871.1_g000011 Rmu_sc0010871.1_g000012 Rmu_sc0011938.1_g000002 Rmu_sc0013472.1_g000004 Rmu_sc0014143.1_g000001 Rmu_sc0015550.1_g000001 Rmu_sc0015855.1_g000002 Rmu_sc0017748.1_g000001 Rmu_sc0031144.1_g000001 Rmu_sc0032350.1_g000002 Rmu_sc0036344.1_g000003 Rmu_ssc0000042.1_g000002 Rmu_ssc0000255.1_g000043
rosa_roxburghii Rroxscaffold_1G00012780 Rroxscaffold_1G00031520 Rroxscaffold_1G00044950 Rroxscaffold_1G00044960 Rroxscaffold_2G00117760 Rroxscaffold_3G00224840 Rroxscaffold_3G00225760 Rroxscaffold_3G00235510 Rroxscaffold_3G00265420 Rroxscaffold_4G00315210 Rroxscaffold_4G00322430 Rroxscaffold_7G00165660 Rroxscaffold_7G00195200 Rroxscaffold_7G00211270
rosa_rugosa Rorug05G0252000 Rorug05G0548900
rosa_samantha Rh6AG065700 Rh6BG058500 Rh6CG058900 Rh6DG055700 Rh7DG180100
rosa_wichuraiana Rw6G005780 Rw6G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 347
AarI CACCTGC 1 cut(s) 395
Acc36I ACCTGC 1 cut(s) 395
AccB1I GGYRCC 1 cut(s) 242
AccI GTMKAC 2 cut(s) 98, 690
AciI CCGC 3 cut(s) 79, 466, 642
AcoI YGGCCR 1 cut(s) 670
AcsI RAATTY 3 cut(s) 265, 761, 886
AcyI GRCGYC 1 cut(s) 243
AfaI GTAC 1 cut(s) 200
AfiI CCNNNNNNNGG 4 cut(s) 478, 589, 679, 829
AgsI TTSAA 2 cut(s) 362, 370
AjnI CCWGG 4 cut(s) 155, 424, 531, 678
AluBI AGCT 4 cut(s) 358, 443, 662, 869
AluI AGCT 4 cut(s) 358, 443, 662, 869
Alw26I GTCTC 2 cut(s) 270, 297
AoxI GGCC 2 cut(s) 639, 670
ApoI RAATTY 3 cut(s) 265, 761, 886
ArsI GACNNNNNNTTYG 2 cut(s) 112, 144
Asp700I GAANNNNTTC 1 cut(s) 398
AspLEI GCGC 4 cut(s) 154, 245, 721, 815
AspS9I GGNCC 4 cut(s) 205, 435, 468, 481
AsuC2I CCSGG 2 cut(s) 625, 830
AsuHPI GGTGA 4 cut(s) 272, 293, 320, 605
AvaII GGWCC 4 cut(s) 205, 435, 468, 481
AxyI CCTNAGG 1 cut(s) 305
BanI GGYRCC 1 cut(s) 242
BbsI GAAGAC 2 cut(s) 328, 539
BccI CCATC 3 cut(s) 423, 824, 845
BceAI ACGGC 2 cut(s) 256, 657
BciT130I CCWGG 4 cut(s) 157, 426, 533, 680
BcnI CCSGG 2 cut(s) 625, 830
BcoDI GTCTC 2 cut(s) 270, 297
BfaI CTAG 6 cut(s) 71, 273, 456, 473, 632, 696
BfoI RGCGCY 2 cut(s) 246, 722
BfuAI ACCTGC 1 cut(s) 395
BisI GCNGC 1 cut(s) 642
BlsI GCNGC 1 cut(s) 643
Bme1390I CCNGG 6 cut(s) 157, 426, 533, 625, 680, 830
Bme18I GGWCC 4 cut(s) 205, 435, 468, 481
BmgT120I GGNCC 4 cut(s) 205, 435, 468, 481
BmiI GGNNCC 4 cut(s) 207, 244, 470, 684
BmrFI CCNGG 6 cut(s) 157, 426, 533, 625, 680, 830
BmsI GCATC 1 cut(s) 653
BoxI GACNNNNGTC 1 cut(s) 600
BpiI GAAGAC 2 cut(s) 328, 539
BpuMI CCSGG 2 cut(s) 625, 830
BsaHI GRCGYC 1 cut(s) 243
BsaJI CCNNGG 2 cut(s) 155, 531
BsaXI ACNNNNNCTCC 2 cut(s) 842, 872
Bsc4I CCNNNNNNNGG 4 cut(s) 478, 589, 679, 829
Bse1I ACTGG 1 cut(s) 602
Bse21I CCTNAGG 1 cut(s) 305
BseBI CCWGG 4 cut(s) 157, 426, 533, 680
BseDI CCNNGG 2 cut(s) 155, 531
BseGI GGATG 2 cut(s) 421, 434
BseLI CCNNNNNNNGG 4 cut(s) 478, 589, 679, 829
BseMII CTCAG 1 cut(s) 296
BseNI ACTGG 1 cut(s) 602
BseRI GAGGAG 1 cut(s) 863
BshFI GGCC 2 cut(s) 641, 672
BshNI GGYRCC 1 cut(s) 242
BsiSI CCGG 2 cut(s) 624, 830
BslFI GGGAC 2 cut(s) 191, 454
BslI CCNNNNNNNGG 4 cut(s) 478, 589, 679, 829
BsmAI GTCTC 2 cut(s) 270, 297
BsmFI GGGAC 2 cut(s) 191, 454
BsnI GGCC 2 cut(s) 641, 672
Bsp143I GATC 4 cut(s) 34, 414, 450, 556
BspACI CCGC 3 cut(s) 79, 466, 642
BspANI GGCC 2 cut(s) 641, 672
BspCNI CTCAG 1 cut(s) 297
BspLI GGNNCC 4 cut(s) 207, 244, 470, 684
BspMI ACCTGC 1 cut(s) 395
BspT107I GGYRCC 1 cut(s) 242
BsrI ACTGG 1 cut(s) 602
BssECI CCNNGG 2 cut(s) 155, 531
BssMI GATC 4 cut(s) 34, 414, 450, 556
BssNAI GTATAC 1 cut(s) 99
BssNI GRCGYC 1 cut(s) 243
Bst1107I GTATAC 1 cut(s) 99
Bst2UI CCWGG 4 cut(s) 157, 426, 533, 680
Bst4CI ACNGT 1 cut(s) 756
BstACI GRCGYC 1 cut(s) 243
BstC8I GCNNGC 1 cut(s) 356
BstDEI CTNAG 2 cut(s) 305, 537
BstF5I GGATG 2 cut(s) 421, 434
BstH2I RGCGCY 2 cut(s) 246, 722
BstHHI GCGC 4 cut(s) 154, 245, 721, 815
BstKTI GATC 4 cut(s) 37, 417, 453, 559
BstMAI GTCTC 2 cut(s) 270, 297
BstMBI GATC 4 cut(s) 34, 414, 450, 556
BstMWI GCNNNNNNNGC 1 cut(s) 641
BstNI CCWGG 4 cut(s) 157, 426, 533, 680
BstPAI GACNNNNGTC 1 cut(s) 600
BstSCI CCNGG 6 cut(s) 155, 424, 531, 623, 678, 828
BstV2I GAAGAC 2 cut(s) 328, 539
BstXI CCANNNNNNTGG 2 cut(s) 82, 587
BstZ17I GTATAC 1 cut(s) 99
Bsu36I CCTNAGG 1 cut(s) 305
BsuRI GGCC 2 cut(s) 641, 672
BtsCI GGATG 2 cut(s) 421, 434
BtsIMutI CAGTG 1 cut(s) 752
BveI ACCTGC 1 cut(s) 395
Cac8I GCNNGC 1 cut(s) 356
CfoI GCGC 4 cut(s) 154, 245, 721, 815
Cfr13I GGNCC 4 cut(s) 205, 435, 468, 481
Csp6I GTAC 1 cut(s) 199
CviAII CATG 3 cut(s) 82, 560, 567
CviQI GTAC 1 cut(s) 199
DdeI CTNAG 2 cut(s) 305, 537
DinI GGCGCC 1 cut(s) 244
DpnI GATC 4 cut(s) 36, 416, 452, 558
DpnII GATC 4 cut(s) 34, 414, 450, 556
EaeI YGGCCR 1 cut(s) 670
Eco47I GGWCC 4 cut(s) 205, 435, 468, 481
Eco81I CCTNAGG 1 cut(s) 305
EcoRI GAATTC 1 cut(s) 886
EcoRII CCWGG 4 cut(s) 155, 424, 531, 678
EcoT22I ATGCAT 1 cut(s) 6
EgeI GGCGCC 1 cut(s) 244
EheI GGCGCC 1 cut(s) 244
FaeI CATG 3 cut(s) 85, 563, 570
FaqI GGGAC 2 cut(s) 191, 454
FatI CATG 3 cut(s) 81, 559, 566
FauI CCCGC 1 cut(s) 86
FauNDI CATATG 1 cut(s) 787
FblI GTMKAC 2 cut(s) 98, 690
Fnu4HI GCNGC 1 cut(s) 642
FokI GGATG 2 cut(s) 408, 441
Fsp4HI GCNGC 1 cut(s) 642
FspBI CTAG 6 cut(s) 71, 273, 456, 473, 632, 696
GlaI GCGC 4 cut(s) 153, 244, 720, 814
GluI GCNGC 1 cut(s) 642
HaeII RGCGCY 2 cut(s) 246, 722
HaeIII GGCC 2 cut(s) 641, 672
HapII CCGG 2 cut(s) 624, 830
HhaI GCGC 4 cut(s) 154, 245, 721, 815
Hin1I GRCGYC 1 cut(s) 243
Hin1II CATG 3 cut(s) 85, 563, 570
Hin6I GCGC 4 cut(s) 152, 243, 719, 813
HinP1I GCGC 4 cut(s) 152, 243, 719, 813
HincII GTYRAC 1 cut(s) 691
HindII GTYRAC 1 cut(s) 691
HindIII AAGCTT 2 cut(s) 356, 867
HinfI GANTC 4 cut(s) 127, 325, 628, 770
HpaII CCGG 2 cut(s) 624, 830
HphI GGTGA 4 cut(s) 272, 293, 320, 605
Hpy166II GTNNAC 2 cut(s) 99, 691
Hpy188I TCNGA 6 cut(s) 34, 90, 317, 324, 556, 760
Hpy188III TCNNGA 3 cut(s) 131, 208, 236
Hpy8I GTNNAC 2 cut(s) 99, 691
HpyAV CCTTC 3 cut(s) 39, 615, 856
HpyCH4III ACNGT 1 cut(s) 756
HpyCH4V TGCA 3 cut(s) 4, 61, 563
HpyF10VI GCNNNNNNNGC 1 cut(s) 641
HpyF3I CTNAG 2 cut(s) 305, 537
Hsp92I GRCGYC 1 cut(s) 243
Hsp92II CATG 3 cut(s) 85, 563, 570
HspAI GCGC 4 cut(s) 152, 243, 719, 813
KasI GGCGCC 1 cut(s) 242
Kzo9I GATC 4 cut(s) 34, 414, 450, 556
LmnI GCTCC 2 cut(s) 682, 726
LweI GCATC 1 cut(s) 653
MaeI CTAG 6 cut(s) 71, 273, 456, 473, 632, 696
MaeIII GTNAC 4 cut(s) 409, 593, 616, 674
MalI GATC 4 cut(s) 36, 416, 452, 558
MboI GATC 4 cut(s) 34, 414, 450, 556
MboII GAAGA 7 cut(s) 219, 328, 406, 539, 889, 892, 895
MluCI AATT 5 cut(s) 265, 476, 611, 761, 886
Mly113I GGCGCC 1 cut(s) 243
MlyI GAGTC 2 cut(s) 136, 779
MmeI TCCRAC 3 cut(s) 364, 518, 552
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 398
MseI TTAA 3 cut(s) 39, 51, 93
MslI CAYNNNNRTG 2 cut(s) 9, 80
MspI CCGG 2 cut(s) 624, 830
MspR9I CCNGG 6 cut(s) 157, 426, 533, 625, 680, 830
MvaI CCWGG 4 cut(s) 157, 426, 533, 680
MwoI GCNNNNNNNGC 1 cut(s) 641
NarI GGCGCC 1 cut(s) 243
NciI CCSGG 2 cut(s) 625, 830
NdeI CATATG 1 cut(s) 787
NdeII GATC 4 cut(s) 34, 414, 450, 556
NlaIII CATG 3 cut(s) 85, 563, 570
NlaIV GGNNCC 4 cut(s) 207, 244, 470, 684
NmuCI GTSAC 3 cut(s) 409, 593, 616
NsiI ATGCAT 1 cut(s) 6
PaqCI CACCTGC 1 cut(s) 395
PdmI GAANNNNTTC 1 cut(s) 398
PfeI GAWTC 2 cut(s) 325, 628
PfoI TCCNGGA 1 cut(s) 424
PkrI GCNGC 1 cut(s) 643
PleI GAGTC 2 cut(s) 135, 778
PluTI GGCGCC 1 cut(s) 246
PpsI GAGTC 2 cut(s) 135, 778
PshAI GACNNNNGTC 1 cut(s) 600
PsiI TTATAA 1 cut(s) 347
Psp6I CCWGG 4 cut(s) 155, 424, 531, 678
PspGI CCWGG 4 cut(s) 155, 424, 531, 678
PspN4I GGNNCC 4 cut(s) 207, 244, 470, 684
PspPI GGNCC 4 cut(s) 205, 435, 468, 481
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
RseI CAYNNNNRTG 2 cut(s) 9, 80
SalI GTCGAC 1 cut(s) 689
SaqAI TTAA 3 cut(s) 39, 51, 93
SatI GCNGC 1 cut(s) 642
Sau3AI GATC 4 cut(s) 34, 414, 450, 556
Sau96I GGNCC 4 cut(s) 205, 435, 468, 481
SchI GAGTC 2 cut(s) 136, 779
ScrFI CCNGG 6 cut(s) 157, 426, 533, 625, 680, 830
SfaNI GCATC 1 cut(s) 653
SfoI GGCGCC 1 cut(s) 244
SinI GGWCC 4 cut(s) 205, 435, 468, 481
SmiMI CAYNNNNRTG 2 cut(s) 9, 80
Sse9I AATT 5 cut(s) 265, 476, 611, 761, 886
SsiI CCGC 3 cut(s) 79, 466, 642
SspDI GGCGCC 1 cut(s) 242
SspI AATATT 1 cut(s) 365
SspMI CTAG 6 cut(s) 71, 273, 456, 473, 632, 696
StyD4I CCNGG 6 cut(s) 155, 424, 531, 623, 678, 828
TaaI ACNGT 1 cut(s) 756
TaqI TCGA 3 cut(s) 652, 690, 890
TaqII GACCGA 2 cut(s) 120, 193
TasI AATT 5 cut(s) 265, 476, 611, 761, 886
TauI GCSGC 1 cut(s) 644
TfiI GAWTC 2 cut(s) 325, 628
Tru1I TTAA 3 cut(s) 39, 51, 93
Tru9I TTAA 3 cut(s) 39, 51, 93
TscAI CASTG 1 cut(s) 759
TseFI GTSAC 3 cut(s) 409, 593, 616
Tsp45I GTSAC 3 cut(s) 409, 593, 616
TspDTI ATGAA 3 cut(s) 159, 301, 407
TspGWI ACGGA 1 cut(s) 713
TspRI CASTG 1 cut(s) 759
VpaK11BI GGWCC 4 cut(s) 205, 435, 468, 481
XapI RAATTY 3 cut(s) 265, 761, 886
XmiI GTMKAC 2 cut(s) 98, 690
XmnI GAANNNNTTC 1 cut(s) 398
XspI CTAG 6 cut(s) 71, 273, 456, 473, 632, 696
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.