Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Forward (+)

8438393 .. 8441501

Gene Structure 3109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G19480.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGAGCAACGACAAGGACAGCATGAACATGTCCGATCTCTCCACCGCTCTTAACGAGGAGGATCGTGCCGGGCTTGTTAATGCTCTTAAGAACAAGTTGCAGAATTTGGCTGGACAACACTCTGATGTCCTTGAAAACTTGACTCCACCAGTCAGGAAGCGTGTCGAGTTTCTAAGAGAGATTCAGAACCAATATGATGAGATGGAAGCAAAATTCTTTGAGGAGAGAGCAGCTCTTGAAGCTAAGTATCAAAAGTTATATCAGCCTTTATATACCAAGCGATATGAGATTGTGAATGGTGTGGTCGAAGTTGAAGGTGCAGCTGAAGAAGTAAAATCCGAACAAGGAGAAGATAAATCAGCTGAAGAGAAAGGAGTACCAGATTTCTGGCTTATTGCATTGAAGAACAATGAAATTACTGCGGAAGAGATAACTGAGCGAGATGAAGGGGCTCTCAAGTATCTCAAAGATATCAAGTGGAGTAGGGTTGAAGAACCAAAAGGGTTCAAGCTTGAGTTTTTCTTTGATCAGAATCCTTACTTCAAGAACACTGTCTTGACCAAGACATATCACATGATTGATGAAGATGAGCCTATCCTTGAGAAGGCCCTCGGGACGGAGATTGAGTGGTATCCTGGAAAGTGTTTGACACAGAAGATTCTAAAAAAGAAGCCAAAGAAAGGATCCAAAAACACAAAGCCGATCACTAAGACTGAGGACTGTGAGAGTTTCTTCAACTTTTTCAGTCCACCTCAAGTTCCTGACGATGATGAGGATCTTGATGATGACATGGCTGATGAACTCCAAGGACAAATGGAGCATGATTATGATATCGGTTCAACAATCAAAGAGAAAATCATCTCGCATGCTGTGTCATGGTTCACTGGTGAAGCTGTTGAGGCAGATGACCTTGATATTGAGGACGACGATGATGAGATTGATGAAGATGATGATGAAGAGGACGAGGAAGATGATGAGGATGACGAGGAGGAGGATGATGAGGATGATGACGAGGAGGAAGAAGCAGATCAAGGAAAGAAGAGCAAAAAGAAGTCATCAGCTGGGCACAAGAAGGCTGGAAGAAGTCAACTTGCGGAAGGTCAAGCAGGTGAGAGGCCACCGGAATGTAAGCAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009292 GO:0009294 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016444 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0046483 GO:0046686 GO:0050896 GO:0051704 GO:0051716 GO:0071704 GO:0071944 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

379

Amino Acids

43.54

Weight (kDa)

4.32

Isoelectric Point (pI)

48.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	53 - 297	9.4e-88	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1097
Acc36I	ACCTGC	1 cut(s)	1097
AccBSI	CCGCTC	1 cut(s)	47
AciI	CCGC	3 cut(s)	45, 422, 1094
AclWI	GGATC	4 cut(s)	69, 678, 691, 783
AcsI	RAATTY	2 cut(s)	103, 212
AcuI	CTGAAG	2 cut(s)	345, 384
AfaI	GTAC	1 cut(s)	378
AfiI	CCNNNNNNNGG	3 cut(s)	604, 616, 680
AflII	CTTAAG	1 cut(s)	86
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	9 cut(s)	134, 239, 314, 403, 491, 508, 544, 736, 840
AjnI	CCWGG	1 cut(s)	634
AluBI	AGCT	7 cut(s)	233, 242, 323, 362, 511, 893, 1061
AluI	AGCT	7 cut(s)	233, 242, 323, 362, 511, 893, 1061
AlwI	GGATC	4 cut(s)	69, 678, 691, 783
Ama87I	CYCGRG	1 cut(s)	611
AoxI	GGCC	2 cut(s)	606, 1115
ApeKI	GCWGC	3 cut(s)	230, 320, 1132
ApoI	RAATTY	2 cut(s)	103, 212
AspS9I	GGNCC	1 cut(s)	607
AsuC2I	CCSGG	1 cut(s)	70
AsuHPI	GGTGA	2 cut(s)	899, 1121
AvaI	CYCGRG	1 cut(s)	611
BaeGI	GKGCMC	1 cut(s)	1068
BamHI	GGATCC	1 cut(s)	683
BanII	GRGCYC	1 cut(s)	454
BbvI	GCAGC	2 cut(s)	242, 332
BccI	CCATC	1 cut(s)	196
BciT130I	CCWGG	1 cut(s)	636
BciVI	GTATCC	1 cut(s)	642
BclI	TGATCA	1 cut(s)	526
BcnI	CCSGG	1 cut(s)	70
BfrI	CTTAAG	1 cut(s)	86
BfuAI	ACCTGC	1 cut(s)	1097
BfuI	GTATCC	1 cut(s)	642
BisI	GCNGC	3 cut(s)	231, 321, 1133
BlsI	GCNGC	3 cut(s)	232, 322, 1134
Bme1390I	CCNGG	2 cut(s)	70, 636
BmeT110I	CYCGRG	1 cut(s)	611
BmgT120I	GGNCC	1 cut(s)	607
BmiI	GGNNCC	1 cut(s)	685
BmrFI	CCNGG	2 cut(s)	70, 636
BplI	GAGNNNNNCTC	2 cut(s)	217, 249
BpuEI	CTTGAG	4 cut(s)	440, 533, 620, 738
BpuMI	CCSGG	1 cut(s)	70
BsaBI	GATNNNNATC	2 cut(s)	531, 774
BsaJI	CCNNGG	2 cut(s)	610, 805
BsaWI	WCCGGW	1 cut(s)	1120
BsaXI	ACNNNNNCTCC	2 cut(s)	611, 641
Bsc4I	CCNNNNNNNGG	3 cut(s)	604, 616, 680
Bse1I	ACTGG	2 cut(s)	149, 889
Bse8I	GATNNNNATC	2 cut(s)	531, 774
BseBI	CCWGG	1 cut(s)	636
BseDI	CCNNGG	2 cut(s)	610, 805
BseGI	GGATG	3 cut(s)	985, 1000, 1009
BseJI	GATNNNNATC	2 cut(s)	531, 774
BseLI	CCNNNNNNNGG	3 cut(s)	604, 616, 680
BseMII	CTCAG	2 cut(s)	426, 705
BseNI	ACTGG	2 cut(s)	149, 889
BseRI	GAGGAG	5 cut(s)	71, 236, 1001, 1004, 1028
BseSI	GKGCMC	1 cut(s)	1068
BseXI	GCAGC	2 cut(s)	242, 332
BseYI	CCCAGC	1 cut(s)	1061
BsgI	GTGCAG	1 cut(s)	339
BshFI	GGCC	2 cut(s)	608, 1117
BsiHKCI	CYCGRG	1 cut(s)	611
BsiSI	CCGG	2 cut(s)	69, 1121
BslFI	GGGAC	1 cut(s)	628
BslI	CCNNNNNNNGG	3 cut(s)	604, 616, 680
BsmFI	GGGAC	1 cut(s)	628
BsnI	GGCC	2 cut(s)	608, 1117
BsoBI	CYCGRG	1 cut(s)	611
Bsp1286I	GDGCHC	2 cut(s)	454, 1068
Bsp143I	GATC	7 cut(s)	34, 61, 526, 683, 702, 775, 1027
BspACI	CCGC	3 cut(s)	45, 422, 1094
BspANI	GGCC	2 cut(s)	608, 1117
BspCNI	CTCAG	2 cut(s)	427, 706
BspLI	GGNNCC	1 cut(s)	685
BspMI	ACCTGC	1 cut(s)	1097
BspPI	GGATC	4 cut(s)	69, 678, 691, 783
BspQI	GCTCTTC	1 cut(s)	1034
BspTI	CTTAAG	1 cut(s)	86
BsrBI	CCGCTC	1 cut(s)	47
BsrI	ACTGG	2 cut(s)	149, 889
BssECI	CCNNGG	2 cut(s)	610, 805
BssMI	GATC	7 cut(s)	34, 61, 526, 683, 702, 775, 1027
BssT1I	CCWWGG	1 cut(s)	805
Bst2UI	CCWGG	1 cut(s)	636
Bst4CI	ACNGT	2 cut(s)	553, 722
Bst6I	CTCTTC	4 cut(s)	360, 420, 951, 1034
BstAFI	CTTAAG	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	867
BstDEI	CTNAG	5 cut(s)	173, 243, 435, 708, 714
BstENI	CCTNNNNNAGG	1 cut(s)	602
BstF5I	GGATG	3 cut(s)	985, 1000, 1009
BstKTI	GATC	7 cut(s)	37, 64, 529, 686, 705, 778, 1030
BstMBI	GATC	7 cut(s)	34, 61, 526, 683, 702, 775, 1027
BstMWI	GCNNNNNNNGC	2 cut(s)	239, 899
BstNI	CCWGG	1 cut(s)	636
BstNSI	RCATGY	2 cut(s)	31, 869
BstSCI	CCNGG	2 cut(s)	68, 634
BstSLI	GKGCMC	1 cut(s)	1068
BstV1I	GCAGC	2 cut(s)	242, 332
BstX2I	RGATCY	2 cut(s)	683, 775
BstXI	CCANNNNNNTGG	1 cut(s)	387
BstYI	RGATCY	2 cut(s)	683, 775
BsuI	GTATCC	1 cut(s)	642
BsuRI	GGCC	2 cut(s)	608, 1117
BtsCI	GGATG	3 cut(s)	985, 1000, 1009
BtsIMutI	CAGTG	2 cut(s)	549, 882
BveI	ACCTGC	1 cut(s)	1097
Cac8I	GCNNGC	1 cut(s)	867
Cfr13I	GGNCC	1 cut(s)	607
Csp6I	GTAC	1 cut(s)	377
CviAII	CATG	7 cut(s)	22, 28, 574, 790, 821, 866, 876
CviQI	GTAC	1 cut(s)	377
DdeI	CTNAG	5 cut(s)	173, 243, 435, 708, 714
DpnI	GATC	7 cut(s)	36, 63, 528, 685, 704, 777, 1029
DpnII	GATC	7 cut(s)	34, 61, 526, 683, 702, 775, 1027
Eam1104I	CTCTTC	4 cut(s)	360, 420, 951, 1034
EarI	CTCTTC	4 cut(s)	360, 420, 951, 1034
Eco130I	CCWWGG	1 cut(s)	805
Eco24I	GRGCYC	1 cut(s)	454
Eco32I	GATATC	2 cut(s)	472, 832
Eco57I	CTGAAG	2 cut(s)	345, 384
Eco88I	CYCGRG	1 cut(s)	611
EcoNI	CCTNNNNNAGG	1 cut(s)	602
EcoO109I	RGGNCCY	1 cut(s)	607
EcoRII	CCWGG	1 cut(s)	634
EcoRV	GATATC	2 cut(s)	472, 832
EcoT14I	CCWWGG	1 cut(s)	805
EcoT38I	GRGCYC	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	805
FaeI	CATG	7 cut(s)	25, 31, 577, 793, 824, 869, 879
FaqI	GGGAC	1 cut(s)	628
FatI	CATG	7 cut(s)	21, 27, 573, 789, 820, 865, 875
FbaI	TGATCA	1 cut(s)	526
Fnu4HI	GCNGC	3 cut(s)	231, 321, 1133
FokI	GGATG	3 cut(s)	992, 1007, 1016
FriOI	GRGCYC	1 cut(s)	454
Fsp4HI	GCNGC	3 cut(s)	231, 321, 1133
GluI	GCNGC	3 cut(s)	231, 321, 1133
GsaI	CCCAGC	1 cut(s)	1065
HaeIII	GGCC	2 cut(s)	608, 1117
HapII	CCGG	2 cut(s)	69, 1121
Hin1II	CATG	7 cut(s)	25, 31, 577, 793, 824, 869, 879
HincII	GTYRAC	1 cut(s)	1088
HindII	GTYRAC	1 cut(s)	1088
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	4 cut(s)	142, 181, 532, 658
HpaII	CCGG	2 cut(s)	69, 1121
HphI	GGTGA	2 cut(s)	899, 1121
Hpy166II	GTNNAC	3 cut(s)	749, 882, 1088
Hpy188I	TCNGA	5 cut(s)	34, 124, 186, 340, 531
Hpy188III	TCNNGA	7 cut(s)	154, 236, 544, 556, 613, 761, 779
Hpy8I	GTNNAC	3 cut(s)	749, 882, 1088
Hpy99I	CGWCG	1 cut(s)	929
HpyAV	CCTTC	5 cut(s)	308, 440, 598, 1066, 1091
HpyCH4III	ACNGT	2 cut(s)	553, 722
HpyCH4V	TGCA	3 cut(s)	100, 320, 398
HpyF10VI	GCNNNNNNNGC	2 cut(s)	239, 899
HpyF3I	CTNAG	5 cut(s)	173, 243, 435, 708, 714
Hsp92II	CATG	7 cut(s)	25, 31, 577, 793, 824, 869, 879
Ksp22I	TGATCA	1 cut(s)	526
Kzo9I	GATC	7 cut(s)	34, 61, 526, 683, 702, 775, 1027
LguI	GCTCTTC	1 cut(s)	1034
LmnI	GCTCC	1 cut(s)	817
Lsp1109I	GCAGC	2 cut(s)	242, 332
MalI	GATC	7 cut(s)	36, 63, 528, 685, 704, 777, 1029
MbiI	CCGCTC	1 cut(s)	47
MboI	GATC	7 cut(s)	34, 61, 526, 683, 702, 775, 1027
MflI	RGATCY	2 cut(s)	683, 775
MhlI	GDGCHC	2 cut(s)	454, 1068
MluCI	AATT	3 cut(s)	103, 212, 414
MlyI	GAGTC	1 cut(s)	136
MseI	TTAA	3 cut(s)	51, 78, 87
MslI	CAYNNNNRTG	4 cut(s)	26, 123, 825, 1123
MspA1I	CMGCKG	3 cut(s)	323, 362, 1061
MspCI	CTTAAG	1 cut(s)	86
MspI	CCGG	2 cut(s)	69, 1121
MspR9I	CCNGG	2 cut(s)	70, 636
MvaI	CCWGG	1 cut(s)	636
MwoI	GCNNNNNNNGC	2 cut(s)	239, 899
NciI	CCSGG	1 cut(s)	70
NdeII	GATC	7 cut(s)	34, 61, 526, 683, 702, 775, 1027
NlaIII	CATG	7 cut(s)	25, 31, 577, 793, 824, 869, 879
NlaIV	GGNNCC	1 cut(s)	685
NspI	RCATGY	2 cut(s)	31, 869
PaeI	GCATGC	1 cut(s)	869
PaqCI	CACCTGC	1 cut(s)	1097
PciI	ACATGT	1 cut(s)	27
PciSI	GCTCTTC	1 cut(s)	1034
PfeI	GAWTC	3 cut(s)	181, 532, 658
PfoI	TCCNGGA	1 cut(s)	634
PkrI	GCNGC	3 cut(s)	232, 322, 1134
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PscI	ACATGT	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	634
PspFI	CCCAGC	1 cut(s)	1061
PspGI	CCWGG	1 cut(s)	634
PspN4I	GGNNCC	1 cut(s)	685
PspPI	GGNCC	1 cut(s)	607
PsuI	RGATCY	2 cut(s)	683, 775
PvuII	CAGCTG	3 cut(s)	323, 362, 1061
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
RseI	CAYNNNNRTG	4 cut(s)	26, 123, 825, 1123
SapI	GCTCTTC	1 cut(s)	1034
SaqAI	TTAA	3 cut(s)	51, 78, 87
SatI	GCNGC	3 cut(s)	231, 321, 1133
Sau3AI	GATC	7 cut(s)	34, 61, 526, 683, 702, 775, 1027
Sau96I	GGNCC	1 cut(s)	607
SchI	GAGTC	1 cut(s)	136
ScrFI	CCNGG	2 cut(s)	70, 636
SduI	GDGCHC	2 cut(s)	454, 1068
SmiMI	CAYNNNNRTG	4 cut(s)	26, 123, 825, 1123
SmlI	CTYRAG	5 cut(s)	86, 455, 512, 599, 753
SmoI	CTYRAG	5 cut(s)	86, 455, 512, 599, 753
SphI	GCATGC	1 cut(s)	869
Sse9I	AATT	3 cut(s)	103, 212, 414
SsiI	CCGC	3 cut(s)	45, 422, 1094
StyD4I	CCNGG	2 cut(s)	68, 634
StyI	CCWWGG	1 cut(s)	805
TaaI	ACNGT	2 cut(s)	553, 722
TaqI	TCGA	2 cut(s)	165, 306
TasI	AATT	3 cut(s)	103, 212, 414
TfiI	GAWTC	3 cut(s)	181, 532, 658
Tru1I	TTAA	3 cut(s)	51, 78, 87
Tru9I	TTAA	3 cut(s)	51, 78, 87
TscAI	CASTG	2 cut(s)	556, 889
TseI	GCWGC	3 cut(s)	230, 320, 1132
TspDTI	ATGAA	7 cut(s)	38, 426, 459, 597, 813, 957, 969
TspGWI	ACGGA	1 cut(s)	632
TspRI	CASTG	2 cut(s)	556, 889
Vha464I	CTTAAG	1 cut(s)	86
XagI	CCTNNNNNAGG	1 cut(s)	602
XapI	RAATTY	2 cut(s)	103, 212
XceI	RCATGY	2 cut(s)	31, 869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.