Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Reverse (-)

26713356 .. 26714106

Gene Structure 751 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g33710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGAAGAATAGCACGGAATTTTTGATTATGAAGCATGATATACCCGCTCTCCGATATCTTAAAGATATCAAGTGCTTCCAGATACATGATCCTCAAGGATTTAAACTGGAGTTCTTGTTTGATCTAAAACCTTACTTCAAGAACTCAGTCGTTACAAAAACGTATTATATGATTGATGAACCTGAGTGCATATGGAAGAAGGAAATCGGGACGGAGATCGAGTGGCATCATGGACAAAGCTTGACTACCATTCCAAGAAAGAACTCAAAGAATGCCAAGTCCATGACTGTTCCAATATTGTTCGAGGATGTGATCGAGTACGACTGTAAAATAGGGAAAAACAGTATAATACGTACAAAAGGAGCTAGCGACCAAAATTGGATCAAGCGTCTCCACGGGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

135

Amino Acids

15.82

Weight (kDa)

8.69

Isoelectric Point (pI)

36.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	6 - 93	9.7e-21	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	47
AciI	CCGC	1 cut(s)	45
AclWI	GGATC	2 cut(s)	83, 389
AcsI	RAATTY	1 cut(s)	17
AfaI	GTAC	2 cut(s)	320, 355
AgsI	TTSAA	1 cut(s)	139
AluBI	AGCT	2 cut(s)	240, 365
AluI	AGCT	2 cut(s)	240, 365
Alw26I	GTCTC	1 cut(s)	395
AlwI	GGATC	2 cut(s)	83, 389
ApoI	RAATTY	1 cut(s)	17
AsuNHI	GCTAGC	1 cut(s)	365
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	1 cut(s)	366
BmsI	GCATC	1 cut(s)	235
BmtI	GCTAGC	1 cut(s)	369
BpmI	CTGGAG	1 cut(s)	128
BpuEI	CTTGAG	1 cut(s)	78
BsaAI	YACGTR	1 cut(s)	353
BsaJI	CCNNGG	1 cut(s)	394
BsaXI	ACNNNNNCTCC	6 cut(s)	33, 63, 101, 131, 206, 236
Bse1I	ACTGG	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	394
BseGI	GGATG	1 cut(s)	313
BseMII	CTCAG	2 cut(s)	159, 174
BseNI	ACTGG	1 cut(s)	111
BslFI	GGGAC	1 cut(s)	223
BsmAI	GTCTC	1 cut(s)	395
BsmBI	CGTCTC	1 cut(s)	395
BsmFI	GGGAC	1 cut(s)	223
BsmI	GAATGC	1 cut(s)	277
Bsp143I	GATC	5 cut(s)	88, 121, 216, 312, 381
BspACI	CCGC	1 cut(s)	45
BspCNI	CTCAG	2 cut(s)	158, 175
BspOI	GCTAGC	1 cut(s)	369
BspPI	GGATC	2 cut(s)	83, 389
BsrBI	CCGCTC	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	111
BssECI	CCNNGG	1 cut(s)	394
BssMI	GATC	5 cut(s)	88, 121, 216, 312, 381
Bst4CI	ACNGT	3 cut(s)	289, 326, 344
BstBAI	YACGTR	1 cut(s)	353
BstC8I	GCNNGC	1 cut(s)	367
BstDEI	CTNAG	2 cut(s)	145, 183
BstDSI	CCRYGG	1 cut(s)	394
BstF5I	GGATG	1 cut(s)	313
BstKTI	GATC	5 cut(s)	91, 124, 219, 315, 384
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	5 cut(s)	88, 121, 216, 312, 381
BstSNI	TACGTA	1 cut(s)	353
BtgI	CCRYGG	1 cut(s)	394
BtsCI	GGATG	1 cut(s)	313
Cac8I	GCNNGC	1 cut(s)	367
CseI	GACGC	1 cut(s)	377
Csp6I	GTAC	2 cut(s)	319, 354
CviAII	CATG	4 cut(s)	35, 86, 230, 283
CviJI	RGCY	2 cut(s)	240, 365
CviKI_1	RGCY	2 cut(s)	240, 365
CviQI	GTAC	2 cut(s)	319, 354
DdeI	CTNAG	2 cut(s)	145, 183
DpnI	GATC	5 cut(s)	90, 123, 218, 314, 383
DpnII	GATC	5 cut(s)	88, 121, 216, 312, 381
DraI	TTTAAA	1 cut(s)	103
Eco105I	TACGTA	1 cut(s)	353
Eco32I	GATATC	2 cut(s)	56, 67
EcoRV	GATATC	2 cut(s)	56, 67
Esp3I	CGTCTC	1 cut(s)	395
FaeI	CATG	4 cut(s)	38, 89, 233, 286
FaqI	GGGAC	1 cut(s)	223
FatI	CATG	4 cut(s)	34, 85, 229, 282
FauI	CCCGC	1 cut(s)	52
FauNDI	CATATG	1 cut(s)	191
FokI	GGATG	1 cut(s)	320
FspBI	CTAG	1 cut(s)	366
GsuI	CTGGAG	1 cut(s)	128
HgaI	GACGC	1 cut(s)	377
Hin1II	CATG	4 cut(s)	38, 89, 233, 286
HindIII	AAGCTT	1 cut(s)	238
Hpy188I	TCNGA	1 cut(s)	53
Hpy188III	TCNNGA	3 cut(s)	79, 139, 208
HpyAV	CCTTC	1 cut(s)	193
HpyCH4III	ACNGT	3 cut(s)	289, 326, 344
HpyCH4IV	ACGT	2 cut(s)	161, 352
HpyCH4V	TGCA	1 cut(s)	189
HpyF3I	CTNAG	2 cut(s)	145, 183
HpySE526I	ACGT	2 cut(s)	161, 352
Hsp92II	CATG	4 cut(s)	38, 89, 233, 286
Kzo9I	GATC	5 cut(s)	88, 121, 216, 312, 381
LmnI	GCTCC	1 cut(s)	362
LpnPI	CCDG	3 cut(s)	92, 92, 195
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	1 cut(s)	366
MaeII	ACGT	2 cut(s)	161, 352
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	5 cut(s)	90, 123, 218, 314, 383
MbiI	CCGCTC	1 cut(s)	47
MboI	GATC	5 cut(s)	88, 121, 216, 312, 381
MboII	GAAGA	2 cut(s)	16, 208
MluCI	AATT	2 cut(s)	17, 376
MnlI	CCTC	2 cut(s)	102, 298
MseI	TTAA	2 cut(s)	60, 102
Mva1269I	GAATGC	1 cut(s)	277
NdeI	CATATG	1 cut(s)	191
NdeII	GATC	5 cut(s)	88, 121, 216, 312, 381
NheI	GCTAGC	1 cut(s)	365
NlaIII	CATG	4 cut(s)	38, 89, 233, 286
PctI	GAATGC	1 cut(s)	277
Ppu21I	YACGTR	1 cut(s)	353
RsaI	GTAC	2 cut(s)	320, 355
RsaNI	GTAC	2 cut(s)	319, 354
SaqAI	TTAA	2 cut(s)	60, 102
Sau3AI	GATC	5 cut(s)	88, 121, 216, 312, 381
SetI	ASST	6 cut(s)	133, 164, 184, 242, 355, 367
SfaNI	GCATC	1 cut(s)	235
SmlI	CTYRAG	1 cut(s)	93
SmoI	CTYRAG	1 cut(s)	93
SnaBI	TACGTA	1 cut(s)	353
Sse9I	AATT	2 cut(s)	17, 376
SsiI	CCGC	1 cut(s)	45
SspI	AATATT	1 cut(s)	297
SspMI	CTAG	1 cut(s)	366
TaaI	ACNGT	3 cut(s)	289, 326, 344
TaiI	ACGT	2 cut(s)	164, 355
TaqI	TCGA	3 cut(s)	219, 303, 315
TasI	AATT	2 cut(s)	17, 376
Tru1I	TTAA	2 cut(s)	60, 102
Tru9I	TTAA	2 cut(s)	60, 102
TspDTI	ATGAA	3 cut(s)	17, 44, 192
TspGWI	ACGGA	2 cut(s)	29, 227
XapI	RAATTY	1 cut(s)	17
XspI	CTAG	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.