Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Reverse (-)

6412249 .. 6415678

Gene Structure 3430 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1081800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGGCAGCGATAAGGATAATATCAACATGTCCGATCTCTCCTCAGGTGCTCTCAACGACGTGGATCGAGCAGGCCTCGTCAATGCTCTCAAGAATAAGATAGAGAGTTTGGCCGGGCAGCACTCTGATATCCTCGAGAGCTTATCTCCTGCAGTCCGAAAGCGGGTCGATGTCCTTAGAGAGATTCAGACCCAGCATGATGAACTTGAGGCAAAGTTTTTCGAGGAGAGAGCAGCTCTTGAAGCCAAATATCAGAAATTGTATCAACCTTTGTATACCAAGAGATACGAGATTGTAAATTGTGTTGTTGAAGCTGAAGGAGTCACTAATGAAGCAGCAACAACAGAAGAGGGTAAAGATTCCGAAGAAAAAGGAGTTCCTGATTTCTGGCTCAACGCAATGAAGAACAATGAAGTGCTAGCTGAGGAGATATCTGAGCGTGATGAAGGTGCTCTTAAATATCTTAAAGACATCAAGTGGTTTAGGATAGATAACCCTAAGGGCTTCAAACTGGAGTTCTACTTTGACACCAATCCCTATTTTAAGAACTCTATCTTGACAAAGACATACCACATGATTGATGAAAATGAACCCATTCTCGAGAAAGCAATAGGGACGGAGATTGAATGGTATCCTTCTAAATGCTTGACACAAAAGCTTCTTAAGAAGAAGCCTAAGAAGGGATCTAAGAATGCTAAGCCAATAACTAGAACTGAAAATTGCGAAAGTTTCTTCAACTTTTTCAGTCCGCCTCAAGTCCCTGAGGACGACGAAGATATTGATGAGGATGTTGCCGAGGAGCTCCAAAACCAGATGGAAAATGATTATGACATTGGGTCTACCATTCGAGATAAGATCATCCCCCATGCTGTTTCATGGTATACTGGAGAGGCCATTGAGGGAGAAGATTTTGGAGACTTGGAAGAAGATGAAGAAGATGAAGATGAAGATGACGAAGAGGAAGACGAAGATGATGAGGATGAAGAAGACGAGGAAGATGATGAAGACGATGAAGATGAAGGCAAAACCAAAAAGAAGACTTCAGCTAGCCACAAGAAGAGTGCAAGAGCACCAACCGGGGAGCAGGGTGAAAGGCCTCCAGAATGCAAACAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

373

Amino Acids

42.68

Weight (kDa)

4.35

Isoelectric Point (pI)

48.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	54 - 297	1.2e-86	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	275, 839, 881
AciI	CCGC	2 cut(s)	163, 749
AclWI	GGATC	2 cut(s)	72, 691
AcoI	YGGCCR	1 cut(s)	111
AcuI	CTGAAG	2 cut(s)	336, 1026
AfiI	CCNNNNNNNGG	2 cut(s)	163, 680
AflII	CTTAAG	1 cut(s)	662
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	5 cut(s)	242, 311, 508, 626, 736
AhdI	GACNNNNNGTC	1 cut(s)	835
AjiI	CACGTC	1 cut(s)	61
AluBI	AGCT	7 cut(s)	141, 236, 314, 422, 658, 802, 1046
AluI	AGCT	7 cut(s)	141, 236, 314, 422, 658, 802, 1046
Alw21I	GWGCWC	4 cut(s)	52, 454, 804, 1072
Alw26I	GTCTC	1 cut(s)	909
AlwI	GGATC	2 cut(s)	72, 691
Ama87I	CYCGRG	2 cut(s)	134, 599
AoxI	GGCC	4 cut(s)	73, 111, 891, 1094
ApeKI	GCWGC	4 cut(s)	6, 118, 233, 335
Asp700I	GAANNNNTTC	1 cut(s)	594
AsuC2I	CCSGG	2 cut(s)	115, 1078
AsuHPI	GGTGA	1 cut(s)	1100
AsuNHI	GCTAGC	2 cut(s)	418, 1046
AvaI	CYCGRG	2 cut(s)	134, 599
AxyI	CCTNAGG	3 cut(s)	43, 498, 762
BanII	GRGCYC	1 cut(s)	804
BbsI	GAAGAC	4 cut(s)	969, 993, 1011, 1043
Bbv12I	GWGCWC	4 cut(s)	52, 454, 804, 1072
BbvCI	CCTCAGC	1 cut(s)	423
BbvI	GCAGC	4 cut(s)	18, 130, 245, 347
BccI	CCATC	1 cut(s)	808
BciVI	GTATCC	1 cut(s)	642
BcnI	CCSGG	2 cut(s)	115, 1078
BcoDI	GTCTC	1 cut(s)	909
BfaI	CTAG	3 cut(s)	419, 708, 1047
BfmI	CTRYAG	1 cut(s)	150
BfrI	CTTAAG	1 cut(s)	662
BfuI	GTATCC	1 cut(s)	642
BisI	GCNGC	4 cut(s)	7, 119, 234, 336
BlpI	GCTNAGC	1 cut(s)	696
BlsI	GCNGC	4 cut(s)	8, 120, 235, 337
Bme1390I	CCNGG	2 cut(s)	115, 1078
BmeRI	GACNNNNNGTC	1 cut(s)	835
BmeT110I	CYCGRG	2 cut(s)	134, 599
BmgBI	CACGTC	1 cut(s)	61
BmrFI	CCNGG	2 cut(s)	115, 1078
BmtI	GCTAGC	2 cut(s)	422, 1050
BpiI	GAAGAC	4 cut(s)	969, 993, 1011, 1043
BplI	GAGNNNNNCTC	6 cut(s)	60, 92, 130, 162, 220, 252
BpmI	CTGGAG	3 cut(s)	533, 906, 1083
Bpu10I	CCTNAGC	1 cut(s)	423
Bpu1102I	GCTNAGC	1 cut(s)	696
BpuEI	CTTGAG	3 cut(s)	74, 227, 738
BpuMI	CCSGG	2 cut(s)	115, 1078
BsaJI	CCNNGG	2 cut(s)	795, 1077
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 680
Bse1I	ACTGG	2 cut(s)	516, 889
Bse21I	CCTNAGG	3 cut(s)	43, 498, 762
Bse3DI	GCAATG	1 cut(s)	405
BseDI	CCNNGG	2 cut(s)	795, 1077
BseGI	GGATG	3 cut(s)	793, 858, 985
BseLI	CCNNNNNNNGG	2 cut(s)	163, 680
BseMI	GCAATG	1 cut(s)	405
BseMII	CTCAG	4 cut(s)	57, 414, 426, 753
BseNI	ACTGG	2 cut(s)	516, 889
BseRI	GAGGAG	4 cut(s)	31, 239, 440, 812
BseXI	GCAGC	4 cut(s)	18, 130, 245, 347
BseYI	CCCAGC	1 cut(s)	192
BshFI	GGCC	4 cut(s)	75, 113, 893, 1096
BsiHKAI	GWGCWC	4 cut(s)	52, 454, 804, 1072
BsiHKCI	CYCGRG	2 cut(s)	134, 599
BsiSI	CCGG	2 cut(s)	114, 1077
BslFI	GGGAC	2 cut(s)	628, 743
BslI	CCNNNNNNNGG	2 cut(s)	163, 680
BsmAI	GTCTC	1 cut(s)	909
BsmFI	GGGAC	2 cut(s)	628, 743
BsmI	GAATGC	2 cut(s)	697, 1109
BsnI	GGCC	4 cut(s)	75, 113, 893, 1096
BsoBI	CYCGRG	2 cut(s)	134, 599
Bsp1286I	GDGCHC	4 cut(s)	52, 454, 804, 1072
Bsp143I	GATC	4 cut(s)	34, 64, 683, 855
Bsp1720I	GCTNAGC	1 cut(s)	696
BspACI	CCGC	2 cut(s)	163, 749
BspANI	GGCC	4 cut(s)	75, 113, 893, 1096
BspCNI	CTCAG	4 cut(s)	56, 415, 427, 754
BspMAI	CTGCAG	1 cut(s)	154
BspOI	GCTAGC	2 cut(s)	422, 1050
BspPI	GGATC	2 cut(s)	72, 691
BspTI	CTTAAG	1 cut(s)	662
BsrDI	GCAATG	1 cut(s)	405
BsrI	ACTGG	2 cut(s)	516, 889
BssECI	CCNNGG	2 cut(s)	795, 1077
BssMI	GATC	4 cut(s)	34, 64, 683, 855
BssNAI	GTATAC	2 cut(s)	276, 882
Bst1107I	GTATAC	2 cut(s)	276, 882
Bst6I	CTCTTC	3 cut(s)	342, 951, 1052
BstAFI	CTTAAG	1 cut(s)	662
BstC8I	GCNNGC	3 cut(s)	73, 420, 1048
BstDEI	CTNAG	9 cut(s)	43, 176, 423, 435, 498, 675, 687, 696, 762
BstF5I	GGATG	3 cut(s)	793, 858, 985
BstKTI	GATC	4 cut(s)	37, 67, 686, 858
BstMAI	GTCTC	1 cut(s)	909
BstMBI	GATC	4 cut(s)	34, 64, 683, 855
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstNSI	RCATGY	1 cut(s)	31
BstSCI	CCNGG	2 cut(s)	113, 1076
BstSFI	CTRYAG	1 cut(s)	150
BstV1I	GCAGC	4 cut(s)	18, 130, 245, 347
BstV2I	GAAGAC	4 cut(s)	969, 993, 1011, 1043
BstX2I	RGATCY	1 cut(s)	683
BstYI	RGATCY	1 cut(s)	683
BstZ17I	GTATAC	2 cut(s)	276, 882
Bsu36I	CCTNAGG	3 cut(s)	43, 498, 762
BsuI	GTATCC	1 cut(s)	642
BsuRI	GGCC	4 cut(s)	75, 113, 893, 1096
BtrI	CACGTC	1 cut(s)	61
BtsCI	GGATG	3 cut(s)	793, 858, 985
Cac8I	GCNNGC	3 cut(s)	73, 420, 1048
CviAII	CATG	5 cut(s)	28, 197, 574, 866, 876
DdeI	CTNAG	9 cut(s)	43, 176, 423, 435, 498, 675, 687, 696, 762
DpnI	GATC	4 cut(s)	36, 66, 685, 857
DpnII	GATC	4 cut(s)	34, 64, 683, 855
DriI	GACNNNNNGTC	1 cut(s)	835
EaeI	YGGCCR	1 cut(s)	111
Eam1104I	CTCTTC	3 cut(s)	342, 951, 1052
Eam1105I	GACNNNNNGTC	1 cut(s)	835
EarI	CTCTTC	3 cut(s)	342, 951, 1052
EciI	GGCGGA	1 cut(s)	738
Ecl136II	GAGCTC	1 cut(s)	802
Eco147I	AGGCCT	2 cut(s)	75, 1096
Eco24I	GRGCYC	1 cut(s)	804
Eco32I	GATATC	2 cut(s)	130, 432
Eco53kI	GAGCTC	1 cut(s)	802
Eco57I	CTGAAG	2 cut(s)	336, 1026
Eco81I	CCTNAGG	3 cut(s)	43, 498, 762
Eco88I	CYCGRG	2 cut(s)	134, 599
EcoICRI	GAGCTC	1 cut(s)	802
EcoRV	GATATC	2 cut(s)	130, 432
EcoT38I	GRGCYC	1 cut(s)	804
FaeI	CATG	5 cut(s)	31, 200, 577, 869, 879
FaiI	YATR	9 cut(s)	29, 198, 276, 568, 575, 828, 867, 877, 882
FalI	AAGNNNNNCTT	2 cut(s)	438, 470
FaqI	GGGAC	2 cut(s)	628, 743
FatI	CATG	5 cut(s)	27, 196, 573, 865, 875
FauI	CCCGC	1 cut(s)	156
FblI	GTMKAC	3 cut(s)	275, 839, 881
Fnu4HI	GCNGC	4 cut(s)	7, 119, 234, 336
FokI	GGATG	3 cut(s)	800, 845, 992
FriOI	GRGCYC	1 cut(s)	804
Fsp4HI	GCNGC	4 cut(s)	7, 119, 234, 336
FspBI	CTAG	3 cut(s)	419, 708, 1047
GluI	GCNGC	4 cut(s)	7, 119, 234, 336
GsaI	CCCAGC	1 cut(s)	196
GsuI	CTGGAG	3 cut(s)	533, 906, 1083
HaeIII	GGCC	4 cut(s)	75, 113, 893, 1096
HapII	CCGG	2 cut(s)	114, 1077
Hin1II	CATG	5 cut(s)	31, 200, 577, 869, 879
HindIII	AAGCTT	1 cut(s)	656
HinfI	GANTC	3 cut(s)	184, 321, 359
HpaII	CCGG	2 cut(s)	114, 1077
HphI	GGTGA	1 cut(s)	1100
Hpy166II	GTNNAC	3 cut(s)	276, 840, 882
Hpy188I	TCNGA	7 cut(s)	34, 127, 158, 189, 255, 364, 436
Hpy188III	TCNNGA	9 cut(s)	91, 136, 239, 380, 556, 599, 601, 848, 1100
Hpy8I	GTNNAC	3 cut(s)	276, 840, 882
Hpy99I	CGWCG	2 cut(s)	62, 773
HpyAV	CCTTC	5 cut(s)	311, 440, 645, 673, 1013
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	3 cut(s)	152, 1064, 1107
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpyF3I	CTNAG	9 cut(s)	43, 176, 423, 435, 498, 675, 687, 696, 762
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	5 cut(s)	31, 200, 577, 869, 879
Kzo9I	GATC	4 cut(s)	34, 64, 683, 855
LmnI	GCTCC	3 cut(s)	799, 807, 1081
Lsp1109I	GCAGC	4 cut(s)	18, 130, 245, 347
MaeI	CTAG	3 cut(s)	419, 708, 1047
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	4 cut(s)	36, 66, 685, 857
MboI	GATC	4 cut(s)	34, 64, 683, 855
MflI	RGATCY	1 cut(s)	683
MhlI	GDGCHC	4 cut(s)	52, 454, 804, 1072
MluCI	AATT	3 cut(s)	257, 298, 718
MlyI	GAGTC	1 cut(s)	330
MroXI	GAANNNNTTC	1 cut(s)	594
MseI	TTAA	4 cut(s)	456, 465, 543, 663
MspCI	CTTAAG	1 cut(s)	662
MspI	CCGG	2 cut(s)	114, 1077
MspR9I	CCNGG	2 cut(s)	115, 1078
Mva1269I	GAATGC	2 cut(s)	697, 1109
MwoI	GCNNNNNNNGC	1 cut(s)	242
NciI	CCSGG	2 cut(s)	115, 1078
NdeII	GATC	4 cut(s)	34, 64, 683, 855
NheI	GCTAGC	2 cut(s)	418, 1046
NlaIII	CATG	5 cut(s)	31, 200, 577, 869, 879
NmeAIII	GCCGAG	1 cut(s)	820
NmuCI	GTSAC	1 cut(s)	322
NspI	RCATGY	1 cut(s)	31
PaeR7I	CTCGAG	2 cut(s)	134, 599
PceI	AGGCCT	2 cut(s)	75, 1096
PciI	ACATGT	1 cut(s)	27
PctI	GAATGC	2 cut(s)	697, 1109
PdmI	GAANNNNTTC	1 cut(s)	594
PfeI	GAWTC	2 cut(s)	184, 359
PkrI	GCNGC	4 cut(s)	8, 120, 235, 337
PleI	GAGTC	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	329
PscI	ACATGT	1 cut(s)	27
Psp124BI	GAGCTC	1 cut(s)	804
PspFI	CCCAGC	1 cut(s)	192
PstI	CTGCAG	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	683
SacI	GAGCTC	1 cut(s)	804
SaqAI	TTAA	4 cut(s)	456, 465, 543, 663
SatI	GCNGC	4 cut(s)	7, 119, 234, 336
Sau3AI	GATC	4 cut(s)	34, 64, 683, 855
SchI	GAGTC	1 cut(s)	330
ScrFI	CCNGG	2 cut(s)	115, 1078
SduI	GDGCHC	4 cut(s)	52, 454, 804, 1072
SfcI	CTRYAG	1 cut(s)	150
Sfr274I	CTCGAG	2 cut(s)	134, 599
SlaI	CTCGAG	2 cut(s)	134, 599
SmlI	CTYRAG	6 cut(s)	89, 134, 206, 599, 662, 753
SmoI	CTYRAG	6 cut(s)	89, 134, 206, 599, 662, 753
Sse9I	AATT	3 cut(s)	257, 298, 718
SseBI	AGGCCT	2 cut(s)	75, 1096
SsiI	CCGC	2 cut(s)	163, 749
SspMI	CTAG	3 cut(s)	419, 708, 1047
SstI	GAGCTC	1 cut(s)	804
StuI	AGGCCT	2 cut(s)	75, 1096
StyD4I	CCNGG	2 cut(s)	113, 1076
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	6 cut(s)	67, 135, 168, 222, 600, 847
TasI	AATT	3 cut(s)	257, 298, 718
TfiI	GAWTC	2 cut(s)	184, 359
Tru1I	TTAA	4 cut(s)	456, 465, 543, 663
Tru9I	TTAA	4 cut(s)	456, 465, 543, 663
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	4 cut(s)	6, 118, 233, 335
Tsp45I	GTSAC	1 cut(s)	322
TspGWI	ACGGA	1 cut(s)	632
Vha464I	CTTAAG	1 cut(s)	662
XceI	RCATGY	1 cut(s)	31
XhoI	CTCGAG	2 cut(s)	134, 599
XmiI	GTMKAC	3 cut(s)	275, 839, 881
XmnI	GAANNNNTTC	1 cut(s)	594
XspI	CTAG	3 cut(s)	419, 708, 1047

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.