Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003556.1

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Forward (+)

25570 .. 28032

Gene Structure 2463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003556.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

atggagatcgagtggcatcctgggaaaagcttgactgaaacagaaaatggtgacagattcttcaacttctttaagtcccctgttgccgactctatcacagagcgcgatgaagaggcacttaagtatctgaaggatatcaagtggtttaagatagatgaaggatgtttcaagttggagttcgtttttcagcagcctaatccttattttgaaaatgatgtgctgaccaaatcatatcaggagaaaacaactgggtgtgtcatcaaatggcatcatggaaaagacttgacacataagcttctggagggaatgtcgaagaattccgagcgcctgagcaaatcttgtgaaagtttcttcaacttctttaaccctcccaagttccgtcctcacgatgaacgtcttgattatgatgaacatcccgattattatgatgaatatattgattgtcatgatgaatatctagtaagtttggctttatcccttgtaattaaaaccgctcatgatgatatagggttttcttctagctcattgatgtatatgacacaggttgaggaaatcaaaagtagactgaattatgactactatatcggtaaaatatttcgagacaaaataattcctcatgcagtatcttggttcacacgcgaggctcttgaaggaggtgagtttgaagacttgcaagatgaggatgatgaggatgtggagttttactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009292 GO:0009294 GO:0009987 GO:0016444 GO:0033554 GO:0034641 GO:0042393 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0046483 GO:0050896 GO:0051704 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

235

Amino Acids

27.99

Weight (kDa)

4.68

Isoelectric Point (pI)

38.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	494
AccI	GTMKAC	1 cut(s)	562
AccII	CGCG	2 cut(s)	105, 639
AciI	CCGC	1 cut(s)	492
AcsI	RAATTY	1 cut(s)	316
AcuI	CTGAAG	1 cut(s)	149
AflII	CTTAAG	1 cut(s)	119
AgsI	TTSAA	6 cut(s)	64, 169, 209, 355, 650, 665
AjnI	CCWGG	1 cut(s)	19
AluBI	AGCT	3 cut(s)	30, 295, 522
AluI	AGCT	3 cut(s)	30, 295, 522
Alw26I	GTCTC	1 cut(s)	594
ApeKI	GCWGC	1 cut(s)	190
ApoI	RAATTY	1 cut(s)	316
AspLEI	GCGC	2 cut(s)	105, 327
AsuHPI	GGTGA	2 cut(s)	62, 668
BaeI	ACNNNNGTAYC	2 cut(s)	107, 140
BbsI	GAAGAC	1 cut(s)	672
BbvI	GCAGC	1 cut(s)	202
BciT130I	CCWGG	1 cut(s)	21
BcoDI	GTCTC	1 cut(s)	594
BfaI	CTAG	3 cut(s)	458, 519, 706
BfoI	RGCGCY	1 cut(s)	328
BfrI	CTTAAG	1 cut(s)	119
BisI	GCNGC	1 cut(s)	191
BlsI	GCNGC	1 cut(s)	192
Bme1390I	CCNGG	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	21
BmrI	ACTGGG	1 cut(s)	258
BmsI	GCATC	2 cut(s)	25, 277
BmuI	ACTGGG	1 cut(s)	258
BpiI	GAAGAC	1 cut(s)	672
BpmI	CTGGAG	1 cut(s)	320
Bpu10I	CCTNAGC	1 cut(s)	329
BsaBI	GATNNNNATC	2 cut(s)	411, 453
BsaJI	CCNNGG	1 cut(s)	20
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 293, 323
Bse1I	ACTGG	1 cut(s)	253
Bse8I	GATNNNNATC	2 cut(s)	411, 453
BseBI	CCWGG	1 cut(s)	21
BseDI	CCNNGG	1 cut(s)	20
BseGI	GGATG	5 cut(s)	16, 167, 412, 688, 697
BseJI	GATNNNNATC	2 cut(s)	411, 453
BseMII	CTCAG	1 cut(s)	320
BseNI	ACTGG	1 cut(s)	253
BseXI	GCAGC	1 cut(s)	202
Bsh1236I	CGCG	2 cut(s)	105, 639
BslFI	GGGAC	1 cut(s)	61
BsmAI	GTCTC	1 cut(s)	594
BsmFI	GGGAC	1 cut(s)	61
Bsp143I	GATC	1 cut(s)	6
BspACI	CCGC	1 cut(s)	492
BspCNI	CTCAG	1 cut(s)	321
BspFNI	CGCG	2 cut(s)	105, 639
BspHI	TCATGA	2 cut(s)	445, 496
BspTI	CTTAAG	1 cut(s)	119
BsrBI	CCGCTC	1 cut(s)	494
BsrI	ACTGG	1 cut(s)	253
BssECI	CCNNGG	1 cut(s)	20
BssMI	GATC	1 cut(s)	6
Bst2UI	CCWGG	1 cut(s)	21
Bst6I	CTCTTC	1 cut(s)	105
BstAFI	CTTAAG	1 cut(s)	119
BstDEI	CTNAG	1 cut(s)	329
BstF5I	GGATG	5 cut(s)	16, 167, 412, 688, 697
BstFNI	CGCG	2 cut(s)	105, 639
BstH2I	RGCGCY	1 cut(s)	328
BstHHI	GCGC	2 cut(s)	105, 327
BstKTI	GATC	1 cut(s)	9
BstMAI	GTCTC	1 cut(s)	594
BstMBI	GATC	1 cut(s)	6
BstNI	CCWGG	1 cut(s)	21
BstSCI	CCNGG	1 cut(s)	19
BstUI	CGCG	2 cut(s)	105, 639
BstV1I	GCAGC	1 cut(s)	202
BstV2I	GAAGAC	1 cut(s)	672
BtgZI	GCGATG	1 cut(s)	120
BtsCI	GGATG	5 cut(s)	16, 167, 412, 688, 697
CciI	TCATGA	2 cut(s)	445, 496
CfoI	GCGC	2 cut(s)	105, 327
CviAII	CATG	4 cut(s)	272, 446, 497, 617
CviJI	RGCY	6 cut(s)	30, 193, 295, 470, 522, 644
CviKI_1	RGCY	6 cut(s)	30, 193, 295, 470, 522, 644
DdeI	CTNAG	1 cut(s)	329
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Eco32I	GATATC	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	149
EcoRI	GAATTC	1 cut(s)	316
EcoRII	CCWGG	1 cut(s)	19
EcoRV	GATATC	1 cut(s)	136
FaeI	CATG	4 cut(s)	275, 449, 500, 620
FalI	AAGNNNNNCTT	4 cut(s)	102, 134, 454, 486
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	4 cut(s)	271, 445, 496, 616
FblI	GTMKAC	1 cut(s)	562
Fnu4HI	GCNGC	1 cut(s)	191
FokI	GGATG	5 cut(s)	3, 174, 399, 695, 704
Fsp4HI	GCNGC	1 cut(s)	191
FspBI	CTAG	3 cut(s)	458, 519, 706
GlaI	GCGC	2 cut(s)	104, 326
GluI	GCNGC	1 cut(s)	191
GsuI	CTGGAG	1 cut(s)	320
HaeII	RGCGCY	1 cut(s)	328
HhaI	GCGC	2 cut(s)	105, 327
Hin1II	CATG	4 cut(s)	275, 449, 500, 620
Hin6I	GCGC	2 cut(s)	103, 325
HinP1I	GCGC	2 cut(s)	103, 325
HindIII	AAGCTT	2 cut(s)	28, 293
HinfI	GANTC	2 cut(s)	57, 89
HphI	GGTGA	2 cut(s)	62, 668
Hpy166II	GTNNAC	2 cut(s)	563, 633
Hpy188I	TCNGA	2 cut(s)	129, 322
Hpy188III	TCNNGA	9 cut(s)	236, 299, 386, 398, 416, 446, 497, 599, 647
Hpy8I	GTNNAC	2 cut(s)	563, 633
HpyAV	CCTTC	3 cut(s)	124, 152, 644
HpyCH4IV	ACGT	1 cut(s)	394
HpyCH4V	TGCA	2 cut(s)	620, 673
HpyF3I	CTNAG	1 cut(s)	329
HpySE526I	ACGT	1 cut(s)	394
Hsp92II	CATG	4 cut(s)	275, 449, 500, 620
HspAI	GCGC	2 cut(s)	103, 325
Kzo9I	GATC	1 cut(s)	6
LpnPI	CCDG	8 cut(s)	6, 33, 93, 221, 234, 284, 341, 527
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	2 cut(s)	25, 277
MaeI	CTAG	3 cut(s)	458, 519, 706
MaeII	ACGT	1 cut(s)	394
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	1 cut(s)	8
MbiI	CCGCTC	1 cut(s)	494
MboI	GATC	1 cut(s)	6
MboII	GAAGA	6 cut(s)	52, 122, 325, 343, 507, 677
MluCI	AATT	4 cut(s)	316, 483, 568, 609
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	1 cut(s)	153
MseI	TTAA	5 cut(s)	72, 120, 147, 363, 486
MspCI	CTTAAG	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	21
MvaI	CCWGG	1 cut(s)	21
MvnI	CGCG	2 cut(s)	105, 639
NdeII	GATC	1 cut(s)	6
NlaIII	CATG	4 cut(s)	275, 449, 500, 620
NmuCI	GTSAC	1 cut(s)	50
PagI	TCATGA	2 cut(s)	445, 496
PfeI	GAWTC	1 cut(s)	57
PkrI	GCNGC	1 cut(s)	192
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	19
PspGI	CCWGG	1 cut(s)	19
SaqAI	TTAA	5 cut(s)	72, 120, 147, 363, 486
SatI	GCNGC	1 cut(s)	191
Sau3AI	GATC	1 cut(s)	6
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	1 cut(s)	21
SetI	ASST	6 cut(s)	32, 297, 397, 524, 546, 658
SfaNI	GCATC	2 cut(s)	25, 277
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	4 cut(s)	316, 483, 568, 609
SsiI	CCGC	1 cut(s)	492
SspI	AATATT	1 cut(s)	594
SspMI	CTAG	3 cut(s)	458, 519, 706
StyD4I	CCNGG	1 cut(s)	19
TaiI	ACGT	1 cut(s)	397
TaqI	TCGA	3 cut(s)	9, 311, 598
TasI	AATT	4 cut(s)	316, 483, 568, 609
TfiI	GAWTC	1 cut(s)	57
Tru1I	TTAA	5 cut(s)	72, 120, 147, 363, 486
Tru9I	TTAA	5 cut(s)	72, 120, 147, 363, 486
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	1 cut(s)	190
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	6 cut(s)	123, 171, 405, 423, 444, 465
TspGWI	ACGGA	1 cut(s)	368
Vha464I	CTTAAG	1 cut(s)	119
XapI	RAATTY	1 cut(s)	316
XmiI	GTMKAC	1 cut(s)	562
XspI	CTAG	3 cut(s)	458, 519, 706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.