Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Reverse (-)

8097708 .. 8098754

Gene Structure 1047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g08240.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAACCTCTCTACACTAAGGTACGAAATTGTCAACGGTGTAACTGAAGTTGAAGAATACACAGAGAAAGGGGTGTCAGATTTCTGGCTCACGGCAATGAAGACCAATGAAGTTCTTTCTGAGGAGATCTCAGAGCGTGATGAAGGGGCTCTGAAGTACCTCCAGGATATCAAGTGGTCTAGGATAGACGAACCAAAAGGATTCAAGCTTGAGTTTTTCTTCAATGCCAATCCTTATTTCAAAAATTCTGTATTGACAAAAATGTATCTCATGATTGATGACGATGAACCTATTTTGGAGAAGGCAATTGGAACGGAGATTGATTGGTATCCTGGGAAGAGCTTGACGCAGAAGATCTTGAAGAAGAAGCCAAGAAAGGGATCAAAGAATGCTAAACCCATAACTAAAACTGAAGACTGTGAAAGCTTCTTTAACTTCTTCAACCTTCCTAAGATACCTGATACTGATGATGGATTTGATGAGGAAACTGCTAAAGAACTTCAAAGTCAGATTGAGCAGGATTACGACATTGGGTACGTGGTGGTATTCTTTTACTTATGTCTAATGAATTCACTCTGTTTACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

196

Amino Acids

22.73

Weight (kDa)

4.6

Isoelectric Point (pI)

39.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	16 - 180	5.2e-56	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	388
AcsI	RAATTY	2 cut(s)	244, 568
AcuI	CTGAAG	3 cut(s)	66, 173, 432
AfaI	GTAC	3 cut(s)	23, 158, 536
AfiI	CCNNNNNNNGG	1 cut(s)	377
AgsI	TTSAA	7 cut(s)	53, 205, 223, 241, 361, 442, 503
AjnI	CCWGG	2 cut(s)	162, 331
AjuI	GAANNNNNNNTTGG	2 cut(s)	221, 253
AluBI	AGCT	3 cut(s)	208, 342, 426
AluI	AGCT	3 cut(s)	208, 342, 426
AlwI	GGATC	1 cut(s)	388
ApoI	RAATTY	2 cut(s)	244, 568
BanII	GRGCYC	1 cut(s)	151
BbsI	GAAGAC	2 cut(s)	107, 420
BccI	CCATC	1 cut(s)	464
BceAI	ACGGC	1 cut(s)	108
BciT130I	CCWGG	2 cut(s)	164, 333
BciVI	GTATCC	1 cut(s)	339
BfaI	CTAG	1 cut(s)	180
BfuI	GTATCC	1 cut(s)	339
BglII	AGATCT	2 cut(s)	126, 354
Bme1390I	CCNGG	2 cut(s)	164, 333
BmrFI	CCNGG	2 cut(s)	164, 333
BpiI	GAAGAC	2 cut(s)	107, 420
BplI	GAGNNNNNCTC	2 cut(s)	113, 145
BpmI	CTGGAG	1 cut(s)	146
BpuEI	CTTGAG	1 cut(s)	230
BsaAI	YACGTR	1 cut(s)	538
BsaBI	GATNNNNATC	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	332
Bsc4I	CCNNNNNNNGG	1 cut(s)	377
Bse3DI	GCAATG	1 cut(s)	102
Bse8I	GATNNNNATC	1 cut(s)	327
BseBI	CCWGG	2 cut(s)	164, 333
BseDI	CCNNGG	1 cut(s)	332
BseJI	GATNNNNATC	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	377
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	2 cut(s)	111, 144
BseRI	GAGGAG	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	377
BsmI	GAATGC	1 cut(s)	394
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp143I	GATC	3 cut(s)	126, 354, 380
BspCNI	CTCAG	2 cut(s)	112, 143
BspHI	TCATGA	1 cut(s)	270
BspPI	GGATC	1 cut(s)	388
BspQI	GCTCTTC	1 cut(s)	332
BsrDI	GCAATG	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	332
BssMI	GATC	3 cut(s)	126, 354, 380
Bst2UI	CCWGG	2 cut(s)	164, 333
Bst4CI	ACNGT	3 cut(s)	38, 419, 585
Bst6I	CTCTTC	1 cut(s)	332
BstBAI	YACGTR	1 cut(s)	538
BstDEI	CTNAG	4 cut(s)	17, 120, 130, 450
BstKTI	GATC	3 cut(s)	129, 357, 383
BstMBI	GATC	3 cut(s)	126, 354, 380
BstNI	CCWGG	2 cut(s)	164, 333
BstSCI	CCNGG	2 cut(s)	162, 331
BstV2I	GAAGAC	2 cut(s)	107, 420
BstX2I	RGATCY	2 cut(s)	126, 354
BstYI	RGATCY	2 cut(s)	126, 354
BsuI	GTATCC	1 cut(s)	339
CciI	TCATGA	1 cut(s)	270
CseI	GACGC	1 cut(s)	355
Csp6I	GTAC	3 cut(s)	22, 157, 535
CviAII	CATG	1 cut(s)	271
CviJI	RGCY	6 cut(s)	88, 149, 208, 342, 370, 426
CviKI_1	RGCY	6 cut(s)	88, 149, 208, 342, 370, 426
CviQI	GTAC	3 cut(s)	22, 157, 535
DdeI	CTNAG	4 cut(s)	17, 120, 130, 450
DpnI	GATC	3 cut(s)	128, 356, 382
DpnII	GATC	3 cut(s)	126, 354, 380
Eam1104I	CTCTTC	1 cut(s)	332
EarI	CTCTTC	1 cut(s)	332
Eco24I	GRGCYC	1 cut(s)	151
Eco32I	GATATC	1 cut(s)	169
Eco57I	CTGAAG	3 cut(s)	66, 173, 432
EcoRI	GAATTC	1 cut(s)	568
EcoRII	CCWGG	2 cut(s)	162, 331
EcoRV	GATATC	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	151
FaeI	CATG	1 cut(s)	274
FaiI	YATR	3 cut(s)	272, 401, 559
FatI	CATG	1 cut(s)	270
FriOI	GRGCYC	1 cut(s)	151
FspBI	CTAG	1 cut(s)	180
GsuI	CTGGAG	1 cut(s)	146
HgaI	GACGC	1 cut(s)	355
Hin1II	CATG	1 cut(s)	274
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HindIII	AAGCTT	2 cut(s)	206, 424
HinfI	GANTC	1 cut(s)	201
Hpy166II	GTNNAC	2 cut(s)	34, 581
Hpy188I	TCNGA	5 cut(s)	79, 121, 133, 153, 510
Hpy188III	TCNNGA	2 cut(s)	271, 358
Hpy8I	GTNNAC	2 cut(s)	34, 581
HpyAV	CCTTC	3 cut(s)	137, 295, 455
HpyCH4III	ACNGT	3 cut(s)	38, 419, 585
HpyCH4IV	ACGT	1 cut(s)	537
HpyF3I	CTNAG	4 cut(s)	17, 120, 130, 450
HpySE526I	ACGT	1 cut(s)	537
Hsp92II	CATG	1 cut(s)	274
Kzo9I	GATC	3 cut(s)	126, 354, 380
LguI	GCTCTTC	1 cut(s)	332
LpnPI	CCDG	7 cut(s)	70, 149, 176, 318, 345, 471, 503
MaeI	CTAG	1 cut(s)	180
MaeII	ACGT	1 cut(s)	537
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	3 cut(s)	128, 356, 382
MboI	GATC	3 cut(s)	126, 354, 380
MboII	GAAGA	9 cut(s)	65, 112, 211, 349, 364, 373, 376, 425, 430
MfeI	CAATTG	1 cut(s)	306
MflI	RGATCY	2 cut(s)	126, 354
MhlI	GDGCHC	1 cut(s)	151
MluCI	AATT	4 cut(s)	27, 244, 306, 568
MnlI	CCTC	4 cut(s)	17, 115, 170, 475
MseI	TTAA	1 cut(s)	432
MslI	CAYNNNNRTG	1 cut(s)	95
MspR9I	CCNGG	2 cut(s)	164, 333
MunI	CAATTG	1 cut(s)	306
Mva1269I	GAATGC	1 cut(s)	394
MvaI	CCWGG	2 cut(s)	164, 333
NdeII	GATC	3 cut(s)	126, 354, 380
NlaIII	CATG	1 cut(s)	274
PagI	TCATGA	1 cut(s)	270
PciSI	GCTCTTC	1 cut(s)	332
PctI	GAATGC	1 cut(s)	394
PfeI	GAWTC	1 cut(s)	201
PfoI	TCCNGGA	1 cut(s)	162
Ppu21I	YACGTR	1 cut(s)	538
Psp6I	CCWGG	2 cut(s)	162, 331
PspGI	CCWGG	2 cut(s)	162, 331
PsuI	RGATCY	2 cut(s)	126, 354
RsaI	GTAC	3 cut(s)	23, 158, 536
RsaNI	GTAC	3 cut(s)	22, 157, 535
RseI	CAYNNNNRTG	1 cut(s)	95
SapI	GCTCTTC	1 cut(s)	332
SaqAI	TTAA	1 cut(s)	432
Sau3AI	GATC	3 cut(s)	126, 354, 380
ScrFI	CCNGG	2 cut(s)	164, 333
SduI	GDGCHC	1 cut(s)	151
SmiMI	CAYNNNNRTG	1 cut(s)	95
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	4 cut(s)	27, 244, 306, 568
SspMI	CTAG	1 cut(s)	180
StyD4I	CCNGG	2 cut(s)	162, 331
TaaI	ACNGT	3 cut(s)	38, 419, 585
TaiI	ACGT	1 cut(s)	540
TasI	AATT	4 cut(s)	27, 244, 306, 568
TfiI	GAWTC	1 cut(s)	201
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TspDTI	ATGAA	6 cut(s)	17, 113, 123, 156, 300, 581
TspGWI	ACGGA	1 cut(s)	329
XapI	RAATTY	2 cut(s)	244, 568
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.