Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Reverse (-)

26663065 .. 26664284

Gene Structure 1220 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g33650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGAAATTACTAAGTATCGGCTCTTCAAAGGGAACCACTCTCTTACATCCAAGATTCCTAAGCGTGTTAATGTGTTGAGAAGGATAGAGCGCCTGATTTCAAAACTCATATGTCATTCTCAAGGCCAGCATAAGGAGCTGGAGAAGCACTTTTTGGAAGAAAGAGCTGCATTGGTAGAAAAATACCGCGAGCTTCGCAAAGATCTCTATACAAAGAGATATGAAGTTGTTAATGGCATCACCGAAGTCGTCAGAGTGAAAACAGACGAAGCCACTGAAGGTATAGCTCTCGAAACTCTAAAGCTTATATTTTACGAGTCTCATGCATACATTACACTTGATAGAAAGAAAGGAGTACCTAAGTTCTGGTTGTACACAATGAAGAATAGCACGGAATTTTTGATTATGAAGCATAATATACCCGCTCTTCGATATCTTAAAGATATCGAGTGCTGCCAGATACATGATCCTCAAGGATTTAAACTGGAGTTCTTGTTTGATCCAAATCCTTACTTCAAGAACTCAGTCCTTACAAAAACGTATAATATGATTGATGAACCTGAGCGCATATGGAAGAAGGAAATCAGAACGGAGATCGAGTGGTCTCCTGGACAAAGCTTGACTACCATTCCAAGAAAGAGCTCAAAGAATGCCAAGTCCACGACTGCAGCAGCTAAACATTGCTATAGTTTCTTTAAATATTTCAAACATATCCAGTATGAGGTAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

244

Amino Acids

28.92

Weight (kDa)

9.49

Isoelectric Point (pI)

37.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	39 - 238	1.5e-40	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	425
AccII	CGCG	1 cut(s)	189
AciI	CCGC	2 cut(s)	187, 423
AclWI	GGATC	2 cut(s)	461, 494
AcsI	RAATTY	1 cut(s)	395
AcuI	CTGAAG	1 cut(s)	297
AfaI	GTAC	2 cut(s)	357, 374
AfiI	CCNNNNNNNGG	2 cut(s)	133, 721
AgsI	TTSAA	4 cut(s)	28, 102, 517, 706
AjnI	CCWGG	1 cut(s)	607
AjuI	GAANNNNNNNTTGG	2 cut(s)	137, 169
AluBI	AGCT	8 cut(s)	139, 167, 193, 287, 304, 618, 642, 674
AluI	AGCT	8 cut(s)	139, 167, 193, 287, 304, 618, 642, 674
Alw21I	GWGCWC	1 cut(s)	644
Alw26I	GTCTC	2 cut(s)	324, 609
AlwI	GGATC	2 cut(s)	461, 494
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	4 cut(s)	167, 453, 668, 671
ApoI	RAATTY	1 cut(s)	395
AspLEI	GCGC	2 cut(s)	93, 567
AsuHPI	GGTGA	1 cut(s)	232
BanII	GRGCYC	1 cut(s)	644
BarI	GAAGNNNNNNTAC	2 cut(s)	8, 40
Bbv12I	GWGCWC	1 cut(s)	644
BbvI	GCAGC	4 cut(s)	154, 440, 680, 683
BcgI	CGANNNNNNTGC	2 cut(s)	305, 339
BciT130I	CCWGG	1 cut(s)	609
BcoDI	GTCTC	2 cut(s)	324, 609
BfmI	CTRYAG	2 cut(s)	666, 685
BfoI	RGCGCY	1 cut(s)	94
BglII	AGATCT	1 cut(s)	202
BisI	GCNGC	4 cut(s)	168, 454, 669, 672
BlsI	GCNGC	4 cut(s)	169, 455, 670, 673
Bme1390I	CCNGG	1 cut(s)	609
BmiI	GGNNCC	1 cut(s)	35
BmrFI	CCNGG	1 cut(s)	609
BmsI	GCATC	1 cut(s)	246
BpmI	CTGGAG	2 cut(s)	161, 506
Bpu10I	CCTNAGC	2 cut(s)	60, 561
BpuEI	CTTGAG	2 cut(s)	105, 456
BsaBI	GATNNNNATC	1 cut(s)	504
BsaI	GGTCTC	1 cut(s)	609
BsaXI	ACNNNNNCTCC	4 cut(s)	479, 509, 584, 614
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 721
Bse1I	ACTGG	2 cut(s)	489, 715
Bse3DI	GCAATG	1 cut(s)	679
Bse8I	GATNNNNATC	1 cut(s)	504
BseBI	CCWGG	1 cut(s)	609
BseGI	GGATG	1 cut(s)	47
BseJI	GATNNNNATC	1 cut(s)	504
BseLI	CCNNNNNNNGG	2 cut(s)	133, 721
BseMI	GCAATG	1 cut(s)	679
BseMII	CTCAG	2 cut(s)	537, 552
BseNI	ACTGG	2 cut(s)	489, 715
BseXI	GCAGC	4 cut(s)	154, 440, 680, 683
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	644
BslI	CCNNNNNNNGG	2 cut(s)	133, 721
BsmAI	GTCTC	2 cut(s)	324, 609
BsmI	GAATGC	1 cut(s)	655
BsnI	GGCC	1 cut(s)	126
Bso31I	GGTCTC	1 cut(s)	609
Bsp1286I	GDGCHC	1 cut(s)	644
Bsp1407I	TGTACA	1 cut(s)	372
Bsp143I	GATC	4 cut(s)	202, 466, 499, 594
BspACI	CCGC	2 cut(s)	187, 423
BspANI	GGCC	1 cut(s)	126
BspCNI	CTCAG	2 cut(s)	536, 553
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	35
BspMAI	CTGCAG	1 cut(s)	670
BspPI	GGATC	2 cut(s)	461, 494
BspQI	GCTCTTC	2 cut(s)	29, 432
BspTNI	GGTCTC	1 cut(s)	609
BsrBI	CCGCTC	1 cut(s)	425
BsrDI	GCAATG	1 cut(s)	679
BsrGI	TGTACA	1 cut(s)	372
BsrI	ACTGG	2 cut(s)	489, 715
BssMI	GATC	4 cut(s)	202, 466, 499, 594
Bst2UI	CCWGG	1 cut(s)	609
Bst6I	CTCTTC	2 cut(s)	29, 432
BstAUI	TGTACA	1 cut(s)	372
BstC8I	GCNNGC	2 cut(s)	128, 191
BstDEI	CTNAG	5 cut(s)	12, 60, 360, 523, 561
BstF5I	GGATG	1 cut(s)	47
BstFNI	CGCG	1 cut(s)	189
BstH2I	RGCGCY	1 cut(s)	94
BstHHI	GCGC	2 cut(s)	93, 567
BstKTI	GATC	4 cut(s)	205, 469, 502, 597
BstMAI	GTCTC	2 cut(s)	324, 609
BstMBI	GATC	4 cut(s)	202, 466, 499, 594
BstMWI	GCNNNNNNNGC	3 cut(s)	136, 145, 195
BstNI	CCWGG	1 cut(s)	609
BstSCI	CCNGG	1 cut(s)	607
BstSFI	CTRYAG	2 cut(s)	666, 685
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	4 cut(s)	154, 440, 680, 683
BstX2I	RGATCY	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	202
BsuRI	GGCC	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	47
BtsIMutI	CAGTG	1 cut(s)	273
Cac8I	GCNNGC	2 cut(s)	128, 191
CfoI	GCGC	2 cut(s)	93, 567
Csp6I	GTAC	2 cut(s)	356, 373
CviAII	CATG	2 cut(s)	323, 464
CviQI	GTAC	2 cut(s)	356, 373
DdeI	CTNAG	5 cut(s)	12, 60, 360, 523, 561
DpnI	GATC	4 cut(s)	204, 468, 501, 596
DpnII	GATC	4 cut(s)	202, 466, 499, 594
DraI	TTTAAA	2 cut(s)	481, 697
Eam1104I	CTCTTC	2 cut(s)	29, 432
EarI	CTCTTC	2 cut(s)	29, 432
Ecl136II	GAGCTC	1 cut(s)	642
Eco24I	GRGCYC	1 cut(s)	644
Eco31I	GGTCTC	1 cut(s)	609
Eco32I	GATATC	2 cut(s)	434, 445
Eco53kI	GAGCTC	1 cut(s)	642
Eco57I	CTGAAG	1 cut(s)	297
EcoICRI	GAGCTC	1 cut(s)	642
EcoRII	CCWGG	1 cut(s)	607
EcoRV	GATATC	2 cut(s)	434, 445
EcoT22I	ATGCAT	1 cut(s)	328
EcoT38I	GRGCYC	1 cut(s)	644
FaeI	CATG	2 cut(s)	326, 467
FatI	CATG	2 cut(s)	322, 463
FauI	CCCGC	1 cut(s)	430
FauNDI	CATATG	2 cut(s)	110, 569
Fnu4HI	GCNGC	4 cut(s)	168, 454, 669, 672
FokI	GGATG	1 cut(s)	34
FriOI	GRGCYC	1 cut(s)	644
Fsp4HI	GCNGC	4 cut(s)	168, 454, 669, 672
GlaI	GCGC	2 cut(s)	92, 566
GluI	GCNGC	4 cut(s)	168, 454, 669, 672
GsuI	CTGGAG	2 cut(s)	161, 506
HaeII	RGCGCY	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	126
HhaI	GCGC	2 cut(s)	93, 567
Hin1II	CATG	2 cut(s)	326, 467
Hin6I	GCGC	2 cut(s)	91, 565
HinP1I	GCGC	2 cut(s)	91, 565
HindIII	AAGCTT	2 cut(s)	302, 616
HinfI	GANTC	2 cut(s)	55, 317
HphI	GGTGA	1 cut(s)	232
Hpy166II	GTNNAC	2 cut(s)	375, 660
Hpy188I	TCNGA	2 cut(s)	254, 587
Hpy188III	TCNNGA	2 cut(s)	290, 517
Hpy8I	GTNNAC	2 cut(s)	375, 660
HpyAV	CCTTC	3 cut(s)	75, 272, 571
HpyCH4IV	ACGT	1 cut(s)	539
HpyCH4V	TGCA	3 cut(s)	170, 326, 668
HpyF10VI	GCNNNNNNNGC	3 cut(s)	136, 145, 195
HpyF3I	CTNAG	5 cut(s)	12, 60, 360, 523, 561
HpySE526I	ACGT	1 cut(s)	539
Hsp92II	CATG	2 cut(s)	326, 467
HspAI	GCGC	2 cut(s)	91, 565
Kzo9I	GATC	4 cut(s)	202, 466, 499, 594
LguI	GCTCTTC	2 cut(s)	29, 432
LmnI	GCTCC	1 cut(s)	136
Lsp1109I	GCAGC	4 cut(s)	154, 440, 680, 683
LweI	GCATC	1 cut(s)	246
MaeII	ACGT	1 cut(s)	539
MalI	GATC	4 cut(s)	204, 468, 501, 596
MbiI	CCGCTC	1 cut(s)	425
MboI	GATC	4 cut(s)	202, 466, 499, 594
MboII	GAAGA	5 cut(s)	16, 170, 394, 419, 586
MflI	RGATCY	1 cut(s)	202
MhlI	GDGCHC	1 cut(s)	644
MluCI	AATT	2 cut(s)	6, 395
MlyI	GAGTC	1 cut(s)	326
MnlI	CCTC	2 cut(s)	480, 715
Mph1103I	ATGCAT	1 cut(s)	328
MseI	TTAA	6 cut(s)	69, 231, 438, 480, 696, 730
MspR9I	CCNGG	1 cut(s)	609
Mva1269I	GAATGC	1 cut(s)	655
MvaI	CCWGG	1 cut(s)	609
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	3 cut(s)	136, 145, 195
NdeI	CATATG	2 cut(s)	110, 569
NdeII	GATC	4 cut(s)	202, 466, 499, 594
NlaIII	CATG	2 cut(s)	326, 467
NlaIV	GGNNCC	1 cut(s)	35
NsiI	ATGCAT	1 cut(s)	328
PciSI	GCTCTTC	2 cut(s)	29, 432
PctI	GAATGC	1 cut(s)	655
PfeI	GAWTC	1 cut(s)	55
PfoI	TCCNGGA	1 cut(s)	607
PkrI	GCNGC	4 cut(s)	169, 455, 670, 673
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
Psp124BI	GAGCTC	1 cut(s)	644
Psp6I	CCWGG	1 cut(s)	607
PspGI	CCWGG	1 cut(s)	607
PspN4I	GGNNCC	1 cut(s)	35
PstI	CTGCAG	1 cut(s)	670
PsuI	RGATCY	1 cut(s)	202
RsaI	GTAC	2 cut(s)	357, 374
RsaNI	GTAC	2 cut(s)	356, 373
SacI	GAGCTC	1 cut(s)	644
SapI	GCTCTTC	2 cut(s)	29, 432
SaqAI	TTAA	6 cut(s)	69, 231, 438, 480, 696, 730
SatI	GCNGC	4 cut(s)	168, 454, 669, 672
Sau3AI	GATC	4 cut(s)	202, 466, 499, 594
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	1 cut(s)	609
SduI	GDGCHC	1 cut(s)	644
SfaNI	GCATC	1 cut(s)	246
SfcI	CTRYAG	2 cut(s)	666, 685
SmlI	CTYRAG	2 cut(s)	120, 471
SmoI	CTYRAG	2 cut(s)	120, 471
Sse9I	AATT	2 cut(s)	6, 395
SsiI	CCGC	2 cut(s)	187, 423
SspI	AATATT	1 cut(s)	701
SstI	GAGCTC	1 cut(s)	644
StyD4I	CCNGG	1 cut(s)	607
TaiI	ACGT	1 cut(s)	542
TaqI	TCGA	4 cut(s)	291, 430, 447, 597
TasI	AATT	2 cut(s)	6, 395
TatI	WGTACW	1 cut(s)	372
TfiI	GAWTC	1 cut(s)	55
Tru1I	TTAA	6 cut(s)	69, 231, 438, 480, 696, 730
Tru9I	TTAA	6 cut(s)	69, 231, 438, 480, 696, 730
TscAI	CASTG	1 cut(s)	280
TseI	GCWGC	4 cut(s)	167, 453, 668, 671
TspDTI	ATGAA	4 cut(s)	237, 395, 422, 570
TspGWI	ACGGA	2 cut(s)	407, 605
TspRI	CASTG	1 cut(s)	280
XapI	RAATTY	1 cut(s)	395
Zsp2I	ATGCAT	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.