Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003556.1

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Forward (+)

30182 .. 35521

Gene Structure 5340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003556.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

atggtatcaatccaaaaactcaaatacccaattcctcaatttcctttctttgacgagtatgagaaagaccagaggattcaagctctgaaaacgactgctggattagccgatgattattcctctgaaaacccacgacccgaaccgcataccccggctgagtccaccttcatctccgccgtttcaattacaaaactggatgaaggggctttccaacatctaaggaacatcctttgtacagagactcctactggattcaagcttgacttcttctttgattccaatcctaactttaaagattccgtgctcacgaaaacatttatgataattcgtggtaacaagcatgaagtgacgaatgcaattgggatggaaattgagtggtatcttggtaaaagcctgaccgacacagaaaatggtgacaacttcttcaacttttttaagacccctgttgccaacggtactgctgaagatgtccaaacacttatggatcatgattattgcatagggtatgtaatgactactttaattacggagaaaggaatccctcaattttggcttactgcaatgaagaatcataaattacttgctcaggagatcacagagcacgatgaagtggcgctcaagtatctgaaagatatcaagtggtataggatatatgggggaagtttcaggctggagtttgtctttcaacagcctaatccttattttgaaaatgaagtcctgaccaaatcatataagcggcctctgatggagaaaacaactggtaaaataatccgcgacaaaatcattcctcatgctatttcatggttcacacgggaggctcttgaacccggaggtgagtttgaagatttgcaagatgattggtatgattactcagatgatgatgaggacgcggaggccatcaagaatttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

303

Amino Acids

35.16

Weight (kDa)

4.81

Isoelectric Point (pI)

25.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	774, 890
AciI	CCGC	5 cut(s)	143, 174, 736, 772, 890
AclWI	GGATC	1 cut(s)	492
AcsI	RAATTY	1 cut(s)	904
AcuI	CTGAAG	1 cut(s)	483
AfaI	GTAC	2 cut(s)	235, 457
AgsI	TTSAA	8 cut(s)	80, 183, 256, 427, 686, 707, 824, 842
AluBI	AGCT	2 cut(s)	83, 259
AluI	AGCT	2 cut(s)	83, 259
Alw21I	GWGCWC	2 cut(s)	306, 603
Alw26I	GTCTC	1 cut(s)	233
AlwI	GGATC	1 cut(s)	492
AoxI	GGCC	2 cut(s)	737, 894
ApoI	RAATTY	1 cut(s)	904
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
AspLEI	GCGC	1 cut(s)	616
AsuC2I	CCSGG	2 cut(s)	152, 828
AsuHPI	GGTGA	2 cut(s)	425, 845
Bbv12I	GWGCWC	2 cut(s)	306, 603
BccI	CCATC	3 cut(s)	358, 739, 905
BceAI	ACGGC	1 cut(s)	161
BcnI	CCSGG	2 cut(s)	152, 828
BcoDI	GTCTC	1 cut(s)	233
BfoI	RGCGCY	1 cut(s)	617
BisI	GCNGC	1 cut(s)	737
BlsI	GCNGC	1 cut(s)	738
Bme1390I	CCNGG	2 cut(s)	152, 828
BmrFI	CCNGG	2 cut(s)	152, 828
BpmI	CTGGAG	1 cut(s)	692
Bpu10I	CCTNAGC	1 cut(s)	585
BpuEI	CTTGAG	1 cut(s)	602
BpuMI	CCSGG	2 cut(s)	152, 828
BsaBI	GATNNNNATC	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	150
BsaXI	ACNNNNNCTCC	2 cut(s)	226, 256
Bse1I	ACTGG	3 cut(s)	198, 253, 763
Bse3DI	GCAATG	1 cut(s)	567
Bse8I	GATNNNNATC	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	3 cut(s)	202, 225, 369
BseJI	GATNNNNATC	1 cut(s)	279
BseMI	GCAATG	1 cut(s)	567
BseMII	CTCAG	3 cut(s)	147, 599, 885
BseNI	ACTGG	3 cut(s)	198, 253, 763
Bsh1236I	CGCG	2 cut(s)	774, 890
BshFI	GGCC	2 cut(s)	739, 896
BsiHKAI	GWGCWC	2 cut(s)	306, 603
BsiSI	CCGG	2 cut(s)	152, 828
BsmAI	GTCTC	1 cut(s)	233
BsmI	GAATGC	1 cut(s)	358
BsnI	GGCC	2 cut(s)	739, 896
Bsp1286I	GDGCHC	2 cut(s)	306, 603
Bsp1407I	TGTACA	1 cut(s)	233
Bsp143I	GATC	2 cut(s)	484, 591
BspACI	CCGC	5 cut(s)	143, 174, 736, 772, 890
BspANI	GGCC	2 cut(s)	739, 896
BspCNI	CTCAG	3 cut(s)	148, 598, 884
BspFNI	CGCG	2 cut(s)	774, 890
BspHI	TCATGA	1 cut(s)	487
BspPI	GGATC	1 cut(s)	492
BsrDI	GCAATG	1 cut(s)	567
BsrGI	TGTACA	1 cut(s)	233
BsrI	ACTGG	3 cut(s)	198, 253, 763
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	2 cut(s)	484, 591
Bst4CI	ACNGT	1 cut(s)	455
BstAUI	TGTACA	1 cut(s)	233
BstDEI	CTNAG	4 cut(s)	156, 218, 585, 871
BstF5I	GGATG	3 cut(s)	202, 225, 369
BstFNI	CGCG	2 cut(s)	774, 890
BstH2I	RGCGCY	1 cut(s)	617
BstHHI	GCGC	1 cut(s)	616
BstKTI	GATC	2 cut(s)	487, 594
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	2 cut(s)	484, 591
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstSCI	CCNGG	2 cut(s)	150, 826
BstUI	CGCG	2 cut(s)	774, 890
BsuRI	GGCC	2 cut(s)	739, 896
BtsCI	GGATG	3 cut(s)	202, 225, 369
CciI	TCATGA	1 cut(s)	487
CfoI	GCGC	1 cut(s)	616
CseI	GACGC	1 cut(s)	896
Csp6I	GTAC	2 cut(s)	234, 456
CviAII	CATG	4 cut(s)	341, 488, 791, 801
CviQI	GTAC	2 cut(s)	234, 456
DdeI	CTNAG	4 cut(s)	156, 218, 585, 871
DpnI	GATC	2 cut(s)	486, 593
DpnII	GATC	2 cut(s)	484, 591
DraI	TTTAAA	1 cut(s)	292
EciI	GGCGGA	1 cut(s)	163
Eco32I	GATATC	1 cut(s)	634
Eco57I	CTGAAG	1 cut(s)	483
EcoRV	GATATC	1 cut(s)	634
FaeI	CATG	4 cut(s)	344, 491, 794, 804
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FatI	CATG	4 cut(s)	340, 487, 790, 800
Fnu4HI	GCNGC	1 cut(s)	737
FokI	GGATG	3 cut(s)	209, 212, 376
Fsp4HI	GCNGC	1 cut(s)	737
GlaI	GCGC	1 cut(s)	615
GluI	GCNGC	1 cut(s)	737
GsuI	CTGGAG	1 cut(s)	692
HaeII	RGCGCY	1 cut(s)	617
HaeIII	GGCC	2 cut(s)	739, 896
HapII	CCGG	2 cut(s)	152, 828
HgaI	GACGC	1 cut(s)	896
HhaI	GCGC	1 cut(s)	616
Hin1II	CATG	4 cut(s)	344, 491, 794, 804
Hin6I	GCGC	1 cut(s)	614
HinP1I	GCGC	1 cut(s)	614
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	8 cut(s)	76, 158, 241, 252, 275, 296, 537, 568
HpaII	CCGG	2 cut(s)	152, 828
HphI	GGTGA	2 cut(s)	425, 845
Hpy166II	GTNNAC	2 cut(s)	162, 807
Hpy188I	TCNGA	5 cut(s)	87, 124, 627, 744, 874
Hpy188III	TCNNGA	6 cut(s)	307, 488, 587, 718, 821, 901
Hpy8I	GTNNAC	2 cut(s)	162, 807
HpyAV	CCTTC	2 cut(s)	175, 194
HpyCH4III	ACNGT	1 cut(s)	455
HpyCH4V	TGCA	4 cut(s)	356, 498, 560, 850
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	4 cut(s)	156, 218, 585, 871
Hsp92II	CATG	4 cut(s)	344, 491, 794, 804
HspAI	GCGC	1 cut(s)	614
Kzo9I	GATC	2 cut(s)	484, 591
MaeIII	GTNAC	3 cut(s)	332, 346, 413
MalI	GATC	2 cut(s)	486, 593
MboI	GATC	2 cut(s)	484, 591
MboII	GAAGA	5 cut(s)	259, 415, 476, 577, 854
MfeI	CAATTG	1 cut(s)	357
MhlI	GDGCHC	2 cut(s)	306, 603
MlyI	GAGTC	2 cut(s)	167, 235
MmeI	TCCRAC	1 cut(s)	235
MseI	TTAA	3 cut(s)	291, 435, 521
MspI	CCGG	2 cut(s)	152, 828
MspR9I	CCNGG	2 cut(s)	152, 828
MunI	CAATTG	1 cut(s)	357
Mva1269I	GAATGC	1 cut(s)	358
MvnI	CGCG	2 cut(s)	774, 890
MwoI	GCNNNNNNNGC	1 cut(s)	104
NciI	CCSGG	2 cut(s)	152, 828
NdeII	GATC	2 cut(s)	484, 591
NlaIII	CATG	4 cut(s)	344, 491, 794, 804
NmuCI	GTSAC	2 cut(s)	346, 413
PagI	TCATGA	1 cut(s)	487
PctI	GAATGC	1 cut(s)	358
PfeI	GAWTC	6 cut(s)	76, 252, 275, 296, 537, 568
PkrI	GCNGC	1 cut(s)	738
PleI	GAGTC	2 cut(s)	166, 235
PpsI	GAGTC	2 cut(s)	166, 235
RsaI	GTAC	2 cut(s)	235, 457
RsaNI	GTAC	2 cut(s)	234, 456
SaqAI	TTAA	3 cut(s)	291, 435, 521
SatI	GCNGC	1 cut(s)	737
Sau3AI	GATC	2 cut(s)	484, 591
SchI	GAGTC	2 cut(s)	167, 235
ScrFI	CCNGG	2 cut(s)	152, 828
SduI	GDGCHC	2 cut(s)	306, 603
SetI	ASST	4 cut(s)	85, 167, 261, 835
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
SsiI	CCGC	5 cut(s)	143, 174, 736, 772, 890
StyD4I	CCNGG	2 cut(s)	150, 826
TaaI	ACNGT	1 cut(s)	455
TaqII	GACCGA	1 cut(s)	413
TatI	WGTACW	1 cut(s)	233
TauI	GCSGC	1 cut(s)	739
TfiI	GAWTC	6 cut(s)	76, 252, 275, 296, 537, 568
Tru1I	TTAA	3 cut(s)	291, 435, 521
Tru9I	TTAA	3 cut(s)	291, 435, 521
TseFI	GTSAC	2 cut(s)	346, 413
Tsp45I	GTSAC	2 cut(s)	346, 413
TspDTI	ATGAA	7 cut(s)	157, 213, 357, 578, 621, 726, 789
TspGWI	ACGGA	2 cut(s)	289, 542
XapI	RAATTY	1 cut(s)	904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.