Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Forward (+)

22214198 .. 22215433

Gene Structure 1236 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g31310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGTTTTTCGAAGAGAGGGCTGCATTGGAAGCAAAATACCAGAAGCTCTATGAACCTCTCTACACTAAGGTATTGTACGAAATTGTCAACGGTGTAACTGAAGTTGAAGAATACACAGAGAAAGGGGTGCCGGATTTCTGGCTCACGGCAATGAAGACCAATGAAGTTCTTTCTGAGGAGATCTCAGAGCGTGATGAAGGGGCTCTGAAGTACCTCCAGGATATCAAGTGGTCTAAGATAGACGAACCAAAAGGATTCAAGCTTGAGTTTTTCTTCAATGCCAATCCTTATTTCAAAAATTCTGTATTGACAAAAACGTATCACATGATTGATGACGATGAACCTATTTTGGAGAAGGCAATTGGAACGGAGATTGATTGGTATCCTGGGAAGAGCTTGACGCAGAAGATCTTGAAGAAGAAGCCAAGAAAGGGATCAAAGAATGTTAAACCCATAACTAAAACTGAAGACTGTGAAAGCTTCTTTAACTTCTTCAATCTTCCTAAGATACCTGATACTGATGATGGATTTGATGAGGAAACTGCTGAAGAACTTCAAAGTCAGATTGAGAAGGATTACGACATTGGTTCTTTTGCAAGTGACAAACATGCAAATACAGATGAAGATAATCGTCTATTTTTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

216

Amino Acids

25.21

Weight (kDa)

4.65

Isoelectric Point (pI)

30.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	2 - 201	3.4e-62	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	127
AclWI	GGATC	1 cut(s)	442
AcsI	RAATTY	1 cut(s)	298
AcuI	CTGAAG	4 cut(s)	120, 227, 486, 567
AfaI	GTAC	2 cut(s)	77, 212
AfiI	CCNNNNNNNGG	1 cut(s)	431
AgsI	TTSAA	7 cut(s)	107, 259, 277, 295, 415, 496, 557
AjnI	CCWGG	2 cut(s)	216, 385
AjuI	GAANNNNNNNTTGG	2 cut(s)	275, 307
AluBI	AGCT	4 cut(s)	46, 262, 396, 480
AluI	AGCT	4 cut(s)	46, 262, 396, 480
AlwI	GGATC	1 cut(s)	442
ApeKI	GCWGC	1 cut(s)	20
ApoI	RAATTY	1 cut(s)	298
Asp700I	GAANNNNTTC	1 cut(s)	552
AsuII	TTCGAA	1 cut(s)	9
BanI	GGYRCC	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	205
BbsI	GAAGAC	2 cut(s)	161, 474
BbvI	GCAGC	1 cut(s)	7
BccI	CCATC	1 cut(s)	518
BceAI	ACGGC	1 cut(s)	162
BciT130I	CCWGG	2 cut(s)	218, 387
BciVI	GTATCC	1 cut(s)	393
BfuI	GTATCC	1 cut(s)	393
BglII	AGATCT	2 cut(s)	180, 408
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
Bme1390I	CCNGG	2 cut(s)	218, 387
BmiI	GGNNCC	1 cut(s)	129
BmrFI	CCNGG	2 cut(s)	218, 387
BpiI	GAAGAC	2 cut(s)	161, 474
BplI	GAGNNNNNCTC	2 cut(s)	167, 199
BpmI	CTGGAG	1 cut(s)	200
Bpu14I	TTCGAA	1 cut(s)	9
BpuEI	CTTGAG	1 cut(s)	284
BsaBI	GATNNNNATC	1 cut(s)	381
BsaJI	CCNNGG	1 cut(s)	386
Bsc4I	CCNNNNNNNGG	1 cut(s)	431
Bse3DI	GCAATG	1 cut(s)	156
Bse8I	GATNNNNATC	1 cut(s)	381
BseBI	CCWGG	2 cut(s)	218, 387
BseDI	CCNNGG	1 cut(s)	386
BseJI	GATNNNNATC	1 cut(s)	381
BseLI	CCNNNNNNNGG	1 cut(s)	431
BseMI	GCAATG	1 cut(s)	156
BseMII	CTCAG	2 cut(s)	165, 198
BseRI	GAGGAG	1 cut(s)	191
BseXI	GCAGC	1 cut(s)	7
BshNI	GGYRCC	1 cut(s)	127
BsiSI	CCGG	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	431
Bsp119I	TTCGAA	1 cut(s)	9
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	3 cut(s)	180, 408, 434
BspCNI	CTCAG	2 cut(s)	166, 197
BspLI	GGNNCC	1 cut(s)	129
BspPI	GGATC	1 cut(s)	442
BspQI	GCTCTTC	1 cut(s)	386
BspT104I	TTCGAA	1 cut(s)	9
BspT107I	GGYRCC	1 cut(s)	127
BsrDI	GCAATG	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	386
BssMI	GATC	3 cut(s)	180, 408, 434
Bst2UI	CCWGG	2 cut(s)	218, 387
Bst4CI	ACNGT	2 cut(s)	92, 473
Bst6I	CTCTTC	2 cut(s)	6, 386
BstBI	TTCGAA	1 cut(s)	9
BstDEI	CTNAG	5 cut(s)	66, 174, 184, 234, 504
BstKTI	GATC	3 cut(s)	183, 411, 437
BstMBI	GATC	3 cut(s)	180, 408, 434
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstNI	CCWGG	2 cut(s)	218, 387
BstNSI	RCATGY	1 cut(s)	611
BstSCI	CCNGG	2 cut(s)	216, 385
BstV1I	GCAGC	1 cut(s)	7
BstV2I	GAAGAC	2 cut(s)	161, 474
BstX2I	RGATCY	2 cut(s)	180, 408
BstYI	RGATCY	2 cut(s)	180, 408
BsuI	GTATCC	1 cut(s)	393
CseI	GACGC	1 cut(s)	409
Csp6I	GTAC	2 cut(s)	76, 211
CviAII	CATG	2 cut(s)	325, 608
CviJI	RGCY	8 cut(s)	20, 46, 142, 203, 262, 396, 424, 480
CviKI_1	RGCY	8 cut(s)	20, 46, 142, 203, 262, 396, 424, 480
CviQI	GTAC	2 cut(s)	76, 211
DdeI	CTNAG	5 cut(s)	66, 174, 184, 234, 504
DpnI	GATC	3 cut(s)	182, 410, 436
DpnII	GATC	3 cut(s)	180, 408, 434
Eam1104I	CTCTTC	2 cut(s)	6, 386
EarI	CTCTTC	2 cut(s)	6, 386
Eco24I	GRGCYC	1 cut(s)	205
Eco32I	GATATC	1 cut(s)	223
Eco57I	CTGAAG	4 cut(s)	120, 227, 486, 567
EcoRII	CCWGG	2 cut(s)	216, 385
EcoRV	GATATC	1 cut(s)	223
EcoT38I	GRGCYC	1 cut(s)	205
FaeI	CATG	2 cut(s)	328, 611
FaiI	YATR	4 cut(s)	51, 326, 455, 609
FatI	CATG	2 cut(s)	324, 607
Fnu4HI	GCNGC	1 cut(s)	21
FriOI	GRGCYC	1 cut(s)	205
Fsp4HI	GCNGC	1 cut(s)	21
GluI	GCNGC	1 cut(s)	21
GsuI	CTGGAG	1 cut(s)	200
HapII	CCGG	1 cut(s)	131
HgaI	GACGC	1 cut(s)	409
Hin1II	CATG	2 cut(s)	328, 611
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HindIII	AAGCTT	2 cut(s)	260, 478
HinfI	GANTC	1 cut(s)	255
HpaII	CCGG	1 cut(s)	131
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	4 cut(s)	175, 187, 207, 564
Hpy188III	TCNNGA	1 cut(s)	412
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	3 cut(s)	191, 349, 565
HpyCH4III	ACNGT	2 cut(s)	92, 473
HpyCH4IV	ACGT	1 cut(s)	317
HpyCH4V	TGCA	3 cut(s)	23, 596, 611
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	5 cut(s)	66, 174, 184, 234, 504
HpySE526I	ACGT	1 cut(s)	317
Hsp92II	CATG	2 cut(s)	328, 611
Kzo9I	GATC	3 cut(s)	180, 408, 434
LguI	GCTCTTC	1 cut(s)	386
LpnPI	CCDG	8 cut(s)	53, 124, 144, 203, 230, 372, 399, 525
Lsp1109I	GCAGC	1 cut(s)	7
MaeII	ACGT	1 cut(s)	317
MaeIII	GTNAC	2 cut(s)	94, 599
MalI	GATC	3 cut(s)	182, 410, 436
MboI	GATC	3 cut(s)	180, 408, 434
MfeI	CAATTG	1 cut(s)	360
MflI	RGATCY	2 cut(s)	180, 408
MhlI	GDGCHC	1 cut(s)	205
MluCI	AATT	3 cut(s)	81, 298, 360
MnlI	CCTC	5 cut(s)	9, 66, 169, 224, 529
MroXI	GAANNNNTTC	1 cut(s)	552
MseI	TTAA	2 cut(s)	447, 486
MslI	CAYNNNNRTG	1 cut(s)	149
MspI	CCGG	1 cut(s)	131
MspR9I	CCNGG	2 cut(s)	218, 387
MunI	CAATTG	1 cut(s)	360
MvaI	CCWGG	2 cut(s)	218, 387
MwoI	GCNNNNNNNGC	1 cut(s)	29
NdeII	GATC	3 cut(s)	180, 408, 434
NlaIII	CATG	2 cut(s)	328, 611
NlaIV	GGNNCC	1 cut(s)	129
NmuCI	GTSAC	1 cut(s)	599
NspI	RCATGY	1 cut(s)	611
NspV	TTCGAA	1 cut(s)	9
PciSI	GCTCTTC	1 cut(s)	386
PdmI	GAANNNNTTC	1 cut(s)	552
PfeI	GAWTC	1 cut(s)	255
PfoI	TCCNGGA	1 cut(s)	216
PkrI	GCNGC	1 cut(s)	22
Psp6I	CCWGG	2 cut(s)	216, 385
PspGI	CCWGG	2 cut(s)	216, 385
PspN4I	GGNNCC	1 cut(s)	129
PsuI	RGATCY	2 cut(s)	180, 408
RsaI	GTAC	2 cut(s)	77, 212
RsaNI	GTAC	2 cut(s)	76, 211
RseI	CAYNNNNRTG	1 cut(s)	149
SapI	GCTCTTC	1 cut(s)	386
SaqAI	TTAA	2 cut(s)	447, 486
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	3 cut(s)	180, 408, 434
ScrFI	CCNGG	2 cut(s)	218, 387
SduI	GDGCHC	1 cut(s)	205
SfuI	TTCGAA	1 cut(s)	9
SmiMI	CAYNNNNRTG	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	3 cut(s)	81, 298, 360
StyD4I	CCNGG	2 cut(s)	216, 385
TaaI	ACNGT	2 cut(s)	92, 473
TaiI	ACGT	1 cut(s)	320
TaqI	TCGA	1 cut(s)	9
TasI	AATT	3 cut(s)	81, 298, 360
TfiI	GAWTC	1 cut(s)	255
Tru1I	TTAA	2 cut(s)	447, 486
Tru9I	TTAA	2 cut(s)	447, 486
TseFI	GTSAC	1 cut(s)	599
TseI	GCWGC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	599
TspDTI	ATGAA	6 cut(s)	66, 167, 177, 210, 354, 636
TspGWI	ACGGA	1 cut(s)	383
XapI	RAATTY	1 cut(s)	298
XceI	RCATGY	1 cut(s)	611
XmnI	GAANNNNTTC	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.