FvH4_6g47360

Belongs to the nucleosome assembly protein (NAP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000381
Physical Location & Seq
Reverse (-)
35906791 .. 35909053
2263 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g47360.t1

Sequence Viewer

Length: 1131 bp
ATGGGCTCAGTGCCCCAACCTGTGTTTGGTCAGTGGTTTGGGATTGAGAAACTAGTCAGGGAGTGCCAAAATGGAGACAACGAGAACATACAACCGAATGAGATTGTCAATATCCAAAGCAAAGTATCTGAACCGGGAGAAGAGCATTCCCTCTTGATAGAATCAGACAGCATTGAAAAGCGTATTGAGGAACTAAAACGGATCCAGTGCCGACATAAGGACCATGAAATCGATTATCTTGAGAAGAGAGCTAAATTGAAGGATGATTACCTCAATGGTTGTAAAGTCGTGCATGAGCAAGGGTGGAACGAGTTTTTACTTTCTAAATTGAAGACAACTGAAGTTCTTGCCGATGAGGACTGGCGGTTGATTCATCCTGTTAGCTACAGGGTGAAAAAGTATCGTGTGCTAAAGCGAGACTTTTTACGGGAAAGAGCTAGATTAGAGGCAAAATACCAAAACTGGTTCCGGGATCTGTACAAGGAGAGGTTTGAGATTGTGAATGGTGCAACTGAAGTTAGAGAACTAAATACTAAAGGAGGAGTGCCGGAGTTTTGGCTCAAAGCAATGAAAAACAATGAAATTACCGAGCGTGATGAAGGGGCTTTGAAGTACCTACAAGATATAGAGTGGAGGAGGTTAGGGAGTCGTGCGAGAGGGGGTTTCGAGCTGAAGTTCATATTTGCTCATAATCCATATTTTGAAAATTCTTCCCTCTTAAAACAATTCACGCATGAGCAAACATCTGCGTCAGAGATCAATTGGCGTCATGGTCAAAGCTTGACACATAAGCTTATAGTGAAGCCAGGAAAGAAAGGAAAACCCATGAGCAAAACTTGTGAAAGCTTTTTTAACTTCTTCACCTCTCGTTCGGTTCCTCATCCCACTGAGGACACTTATCCTTATACTCCCAGTGAAGCTACTGTTGAGGGATTTAAAGCCCAGCTCAGATATGATTTTCACATTGGTGAAATAATTCGAGACAAAATTATTCCTCATGCTATAGCATGGGTTACAAAGGAGGCGTTGCAAAAGAGTAGCGAGTTTCATGATTTAGAAGACCTCTACTATGACGGTTATTCAGAAGACGGTATGGATGAATGTGATGGGAATGAGGATGATGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAP

Protein Analysis

377

Amino Acids

44.22

Weight (kDa)

5.66

Isoelectric Point (pI)

49.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 132 - 340 7.2e-46 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000381)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 364
AclWI GGATC 3 cut(s) 196, 209, 480
AcsI RAATTY 1 cut(s) 706
AcuI CTGAAG 3 cut(s) 360, 534, 692
AcyI GRCGYC 1 cut(s) 766
AfaI GTAC 2 cut(s) 479, 614
AfiI CCNNNNNNNGG 2 cut(s) 26, 217
AgsI TTSAA 5 cut(s) 176, 259, 331, 610, 704
AhlI ACTAGT 1 cut(s) 52
AjnI CCWGG 1 cut(s) 805
AleI CACNNNNGTG 1 cut(s) 966
AluBI AGCT 9 cut(s) 251, 384, 437, 670, 780, 793, 846, 920, 946
AluI AGCT 9 cut(s) 251, 384, 437, 670, 780, 793, 846, 920, 946
Alw26I GTCTC 3 cut(s) 69, 411, 975
AlwI GGATC 3 cut(s) 196, 209, 480
ApoI RAATTY 1 cut(s) 706
Asp700I GAANNNNTTC 1 cut(s) 975
AspS9I GGNCC 1 cut(s) 220
AsuC2I CCSGG 2 cut(s) 135, 470
AsuHPI GGTGA 3 cut(s) 403, 853, 980
AvaII GGWCC 1 cut(s) 220
BaeGI GKGCMC 1 cut(s) 15
BamHI GGATCC 1 cut(s) 201
BanII GRGCYC 1 cut(s) 8
BarI GAAGNNNNNNTAC 2 cut(s) 251, 283
BbsI GAAGAC 3 cut(s) 338, 1065, 1092
BccI CCATC 1 cut(s) 1100
BciT130I CCWGG 1 cut(s) 807
BcnI CCSGG 2 cut(s) 135, 470
BcoDI GTCTC 3 cut(s) 69, 411, 975
BcuI ACTAGT 1 cut(s) 52
BfaI CTAG 2 cut(s) 53, 438
BfmI CTRYAG 2 cut(s) 385, 1002
Bme1390I CCNGG 3 cut(s) 135, 470, 807
Bme18I GGWCC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 220
BmiI GGNNCC 3 cut(s) 203, 467, 876
BmrFI CCNGG 3 cut(s) 135, 470, 807
BmrI ACTGGG 1 cut(s) 906
BmuI ACTGGG 1 cut(s) 906
BpiI GAAGAC 3 cut(s) 338, 1065, 1092
BpuEI CTTGAG 1 cut(s) 260
BpuMI CCSGG 2 cut(s) 135, 470
Bsa29I ATCGAT 1 cut(s) 231
BsaHI GRCGYC 1 cut(s) 766
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 217
Bse1I ACTGG 4 cut(s) 205, 365, 467, 912
Bse3DI GCAATG 1 cut(s) 573
BseBI CCWGG 1 cut(s) 807
BseCI ATCGAT 1 cut(s) 231
BseGI GGATG 5 cut(s) 268, 373, 880, 1102, 1123
BseLI CCNNNNNNNGG 2 cut(s) 26, 217
BseMI GCAATG 1 cut(s) 573
BseMII CTCAG 3 cut(s) 21, 879, 961
BseNI ACTGG 4 cut(s) 205, 365, 467, 912
BseRI GAGGAG 2 cut(s) 555, 649
BseSI GKGCMC 1 cut(s) 15
BseYI CCCAGC 1 cut(s) 942
BshVI ATCGAT 1 cut(s) 231
BsiSI CCGG 3 cut(s) 134, 469, 548
BslI CCNNNNNNNGG 2 cut(s) 26, 217
BsmAI GTCTC 3 cut(s) 69, 411, 975
BsmI GAATGC 1 cut(s) 145
Bsp1286I GDGCHC 2 cut(s) 8, 15
Bsp1407I TGTACA 1 cut(s) 477
Bsp143I GATC 3 cut(s) 201, 472, 756
BspACI CCGC 1 cut(s) 364
BspCNI CTCAG 3 cut(s) 20, 880, 960
BspDI ATCGAT 1 cut(s) 231
BspHI TCATGA 1 cut(s) 1048
BspLI GGNNCC 3 cut(s) 203, 467, 876
BspPI GGATC 3 cut(s) 196, 209, 480
BspQI GCTCTTC 1 cut(s) 135
BsrDI GCAATG 1 cut(s) 573
BsrGI TGTACA 1 cut(s) 477
BsrI ACTGG 4 cut(s) 205, 365, 467, 912
BssMI GATC 3 cut(s) 201, 472, 756
BssNI GRCGYC 1 cut(s) 766
Bst2UI CCWGG 1 cut(s) 807
Bst4CI ACNGT 3 cut(s) 925, 1076, 1091
Bst6I CTCTTC 2 cut(s) 135, 239
BstACI GRCGYC 1 cut(s) 766
BstAUI TGTACA 1 cut(s) 477
BstDEI CTNAG 3 cut(s) 7, 888, 947
BstF5I GGATG 5 cut(s) 268, 373, 880, 1102, 1123
BstKTI GATC 3 cut(s) 204, 475, 759
BstMAI GTCTC 3 cut(s) 69, 411, 975
BstMBI GATC 3 cut(s) 201, 472, 756
BstNI CCWGG 1 cut(s) 807
BstSCI CCNGG 3 cut(s) 133, 468, 805
BstSFI CTRYAG 2 cut(s) 385, 1002
BstSLI GKGCMC 1 cut(s) 15
BstV2I GAAGAC 3 cut(s) 338, 1065, 1092
BstX2I RGATCY 2 cut(s) 201, 472
BstYI RGATCY 2 cut(s) 201, 472
Bsu15I ATCGAT 1 cut(s) 231
BsuTUI ATCGAT 1 cut(s) 231
BtsCI GGATG 5 cut(s) 268, 373, 880, 1102, 1123
BtsIMutI CAGTG 5 cut(s) 15, 38, 212, 885, 919
CciI TCATGA 1 cut(s) 1048
Cfr13I GGNCC 1 cut(s) 220
ClaI ATCGAT 1 cut(s) 231
CseI GACGC 2 cut(s) 738, 755
Csp6I GTAC 2 cut(s) 478, 613
CviAII CATG 8 cut(s) 224, 293, 734, 770, 826, 998, 1008, 1049
CviQI GTAC 2 cut(s) 478, 613
DdeI CTNAG 3 cut(s) 7, 888, 947
DpnI GATC 3 cut(s) 203, 474, 758
DpnII GATC 3 cut(s) 201, 472, 756
DraI TTTAAA 1 cut(s) 937
Eam1104I CTCTTC 2 cut(s) 135, 239
EarI CTCTTC 2 cut(s) 135, 239
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 220
Eco57I CTGAAG 3 cut(s) 360, 534, 692
EcoRII CCWGG 1 cut(s) 805
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 8 cut(s) 227, 296, 737, 773, 829, 1001, 1011, 1052
FalI AAGNNNNNCTT 2 cut(s) 404, 436
FatI CATG 8 cut(s) 223, 292, 733, 769, 825, 997, 1007, 1048
FokI GGATG 4 cut(s) 275, 360, 867, 1109
FriOI GRGCYC 1 cut(s) 8
FspBI CTAG 2 cut(s) 53, 438
GsaI CCCAGC 1 cut(s) 946
HapII CCGG 3 cut(s) 134, 469, 548
HgaI GACGC 2 cut(s) 738, 755
Hin1I GRCGYC 1 cut(s) 766
Hin1II CATG 8 cut(s) 227, 296, 737, 773, 829, 1001, 1011, 1052
HindIII AAGCTT 3 cut(s) 778, 791, 844
HinfI GANTC 3 cut(s) 161, 370, 646
HpaII CCGG 3 cut(s) 134, 469, 548
HphI GGTGA 3 cut(s) 403, 853, 980
Hpy188I TCNGA 5 cut(s) 130, 166, 754, 950, 1084
Hpy188III TCNNGA 4 cut(s) 154, 239, 980, 1049
HpyAV CCTTC 2 cut(s) 253, 593
HpyCH4III ACNGT 3 cut(s) 925, 1076, 1091
HpyCH4V TGCA 3 cut(s) 292, 509, 1030
HpyF3I CTNAG 3 cut(s) 7, 888, 947
Hsp92I GRCGYC 1 cut(s) 766
Hsp92II CATG 8 cut(s) 227, 296, 737, 773, 829, 1001, 1011, 1052
Kzo9I GATC 3 cut(s) 201, 472, 756
LguI GCTCTTC 1 cut(s) 135
MaeI CTAG 2 cut(s) 53, 438
MaeIII GTNAC 1 cut(s) 1012
MalI GATC 3 cut(s) 203, 474, 758
MboI GATC 3 cut(s) 201, 472, 756
MboII GAAGA 7 cut(s) 152, 256, 343, 702, 850, 1070, 1097
MfeI CAATTG 1 cut(s) 760
MflI RGATCY 2 cut(s) 201, 472
MhlI GDGCHC 2 cut(s) 8, 15
MluCI AATT 8 cut(s) 254, 326, 582, 706, 725, 760, 975, 987
MlyI GAGTC 1 cut(s) 655
MroXI GAANNNNTTC 1 cut(s) 975
MseI TTAA 3 cut(s) 719, 852, 936
MslI CAYNNNNRTG 1 cut(s) 966
MspI CCGG 3 cut(s) 134, 469, 548
MspR9I CCNGG 3 cut(s) 135, 470, 807
MunI CAATTG 1 cut(s) 760
Mva1269I GAATGC 1 cut(s) 145
MvaI CCWGG 1 cut(s) 807
NciI CCSGG 2 cut(s) 135, 470
NdeII GATC 3 cut(s) 201, 472, 756
NlaIII CATG 8 cut(s) 227, 296, 737, 773, 829, 1001, 1011, 1052
NlaIV GGNNCC 3 cut(s) 203, 467, 876
OliI CACNNNNGTG 1 cut(s) 966
PagI TCATGA 1 cut(s) 1048
PciSI GCTCTTC 1 cut(s) 135
PctI GAATGC 1 cut(s) 145
PdmI GAANNNNTTC 1 cut(s) 975
PfeI GAWTC 2 cut(s) 161, 370
PfoI TCCNGGA 1 cut(s) 468
PleI GAGTC 1 cut(s) 654
PpsI GAGTC 1 cut(s) 654
Psp6I CCWGG 1 cut(s) 805
PspFI CCCAGC 1 cut(s) 942
PspGI CCWGG 1 cut(s) 805
PspN4I GGNNCC 3 cut(s) 203, 467, 876
PspPI GGNCC 1 cut(s) 220
PsuI RGATCY 2 cut(s) 201, 472
RsaI GTAC 2 cut(s) 479, 614
RsaNI GTAC 2 cut(s) 478, 613
RseI CAYNNNNRTG 1 cut(s) 966
SapI GCTCTTC 1 cut(s) 135
SaqAI TTAA 3 cut(s) 719, 852, 936
Sau3AI GATC 3 cut(s) 201, 472, 756
Sau96I GGNCC 1 cut(s) 220
SchI GAGTC 1 cut(s) 655
ScrFI CCNGG 3 cut(s) 135, 470, 807
SduI GDGCHC 2 cut(s) 8, 15
SfcI CTRYAG 2 cut(s) 385, 1002
SinI GGWCC 1 cut(s) 220
SmiMI CAYNNNNRTG 1 cut(s) 966
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
SpeI ACTAGT 1 cut(s) 52
Sse9I AATT 8 cut(s) 254, 326, 582, 706, 725, 760, 975, 987
SsiI CCGC 1 cut(s) 364
SspMI CTAG 2 cut(s) 53, 438
StyD4I CCNGG 3 cut(s) 133, 468, 805
TaaI ACNGT 3 cut(s) 925, 1076, 1091
TaqI TCGA 3 cut(s) 231, 666, 979
TasI AATT 8 cut(s) 254, 326, 582, 706, 725, 760, 975, 987
TatI WGTACW 1 cut(s) 477
TfiI GAWTC 2 cut(s) 161, 370
Tru1I TTAA 3 cut(s) 719, 852, 936
Tru9I TTAA 3 cut(s) 719, 852, 936
TscAI CASTG 5 cut(s) 15, 38, 212, 892, 919
TspDTI ATGAA 8 cut(s) 240, 362, 584, 594, 612, 667, 1037, 1113
TspGWI ACGGA 1 cut(s) 214
TspRI CASTG 5 cut(s) 15, 38, 212, 892, 919
VpaK11BI GGWCC 1 cut(s) 220
XapI RAATTY 1 cut(s) 706
XcmI CCANNNNNNNNNTGG 1 cut(s) 23
XmnI GAANNNNTTC 1 cut(s) 975
XspI CTAG 2 cut(s) 53, 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.