Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Forward (+)

23609560 .. 23612834

Gene Structure 3275 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00101740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGAGTAGCAACAAAGACAACTTCGACATGTCCGACCTCGGCGCCTCCCTTCCGCCGCCGCCCGCCGCTCTTAGTGCGGAGGATCGCGCTGGTCTTGTTAATGCTCTCAAGGATAAGCTTCAGAGCTTGGCCGGACAGCATACCGACATATTAGAAACTTTGTCACCAACGGTCAGGAAACGTGTTGATGTATTGAGAGAGATGCAGAGCCAACATGATGAGTTGGAAAAGAAGTTTTTTGAAGAAGAAAGGGCTGCATTGGAAGCAAAATACCAGAAGCTCTATGAACCTCTCTACACAAAGAGATACGAAATTGTCAACGAGAAAGGGGTGCCTGACTTCTGGCTTACGGCAATGAAGACCAATGAAGTTCTTTCTGAGGAGATTTCAGAGCGTGATGAAGGGGCTCTGAAGTACCTCAAGGATATCAAGTGGTATAGGATAGATGAACCGAAAGGATTCAAGCTTGAGTTTTTCTTCAATGCCAATCCTTATTTCAAAAATTCTGTCCTGACAAAAACGTATCACATGATTGATGACGATGAACCTATTTTGGAGAAGGCAATTGGGACGGAGATTGAATGGTATCCTGGGAAAAGCTTGACGCAGAAGATCTTGAAGAAGAAGCCAAGAAAGGGATCAAAAAATTCTAAACCCATAACCAAAACTGAAGATTGTGAAAGCTTCTTTAACTTCTTCAACCCTCCTGAGATCCCTGATACTGATGATGGATTTGATGAGGAAACTGCTGAAGAACTTCAAGGTCAGATGGAGCAGGATTATGACATTGGCCATCTGCTGGAGCTAAGAAAAGTGGTAAGGCACAAGGAGCAGAAGGTGGCGAGCGTCCTCCGGAGTGCAAGCAGCAGTAGTGACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

293

Amino Acids

33.77

Weight (kDa)

5.06

Isoelectric Point (pI)

44.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	60 - 108	7.5e-10	Nucleosome assembly protein (NAP)
NAP	PF00956	108 - 268	2e-58	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	41, 331
AccB7I	CCANNNNNTGG	1 cut(s)	799
AccBSI	CCGCTC	1 cut(s)	68
AccII	CGCG	1 cut(s)	87
AccIII	TCCGGA	1 cut(s)	852
AciI	CCGC	6 cut(s)	53, 56, 59, 63, 66, 77
AclWI	GGATC	3 cut(s)	90, 646, 706
AcoI	YGGCCR	2 cut(s)	129, 790
AcsI	RAATTY	2 cut(s)	502, 646
AcuI	CTGAAG	4 cut(s)	104, 431, 690, 771
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	1 cut(s)	416
AfiI	CCNNNNNNNGG	2 cut(s)	635, 799
AflIII	ACRYGT	2 cut(s)	27, 181
AgsI	TTSAA	8 cut(s)	242, 463, 481, 499, 581, 619, 700, 761
AjnI	CCWGG	1 cut(s)	589
AjuI	GAANNNNNNNTTGG	2 cut(s)	479, 511
AluBI	AGCT	7 cut(s)	118, 126, 280, 466, 600, 684, 805
AluI	AGCT	7 cut(s)	118, 126, 280, 466, 600, 684, 805
AlwI	GGATC	3 cut(s)	90, 646, 706
Aor13HI	TCCGGA	1 cut(s)	852
AoxI	GGCC	2 cut(s)	129, 790
ApeKI	GCWGC	2 cut(s)	254, 864
ApoI	RAATTY	2 cut(s)	502, 646
ArsI	GACNNNNNNTTYG	2 cut(s)	492, 524
Asp700I	GAANNNNTTC	2 cut(s)	458, 756
AspLEI	GCGC	2 cut(s)	44, 89
AsuHPI	GGTGA	1 cut(s)	156
BalI	TGGCCA	1 cut(s)	792
BanI	GGYRCC	2 cut(s)	41, 331
BanII	GRGCYC	1 cut(s)	409
BbsI	GAAGAC	1 cut(s)	365
BbvI	GCAGC	2 cut(s)	241, 876
BccI	CCATC	3 cut(s)	722, 763, 801
BceAI	ACGGC	1 cut(s)	366
BciT130I	CCWGG	1 cut(s)	591
BciVI	GTATCC	1 cut(s)	597
BfoI	RGCGCY	1 cut(s)	45
BfuI	GTATCC	1 cut(s)	597
BglII	AGATCT	1 cut(s)	612
BisI	GCNGC	5 cut(s)	56, 59, 66, 255, 865
BlsI	GCNGC	5 cut(s)	57, 60, 67, 256, 866
Bme1390I	CCNGG	1 cut(s)	591
BmiI	GGNNCC	2 cut(s)	43, 333
BmrFI	CCNGG	1 cut(s)	591
BmsI	GCATC	1 cut(s)	192
BpiI	GAAGAC	1 cut(s)	365
BpmI	CTGGAG	1 cut(s)	821
BpuEI	CTTGAG	3 cut(s)	92, 404, 488
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	2 cut(s)	37, 590
BsaWI	WCCGGW	1 cut(s)	852
Bsc4I	CCNNNNNNNGG	2 cut(s)	635, 799
Bse3DI	GCAATG	1 cut(s)	360
BseAI	TCCGGA	1 cut(s)	852
BseBI	CCWGG	1 cut(s)	591
BseDI	CCNNGG	2 cut(s)	37, 590
BseLI	CCNNNNNNNGG	2 cut(s)	635, 799
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	2 cut(s)	369, 699
BseRI	GAGGAG	1 cut(s)	395
BseXI	GCAGC	2 cut(s)	241, 876
Bsh1236I	CGCG	1 cut(s)	87
BshFI	GGCC	2 cut(s)	131, 792
BshNI	GGYRCC	2 cut(s)	41, 331
BsiSI	CCGG	2 cut(s)	132, 853
BslFI	GGGAC	1 cut(s)	583
BslI	CCNNNNNNNGG	2 cut(s)	635, 799
BsmFI	GGGAC	1 cut(s)	583
BsnI	GGCC	2 cut(s)	131, 792
Bsp1286I	GDGCHC	1 cut(s)	409
Bsp13I	TCCGGA	1 cut(s)	852
Bsp143I	GATC	4 cut(s)	82, 612, 638, 711
BspACI	CCGC	6 cut(s)	53, 56, 59, 63, 66, 77
BspANI	GGCC	2 cut(s)	131, 792
BspCNI	CTCAG	2 cut(s)	370, 700
BspEI	TCCGGA	1 cut(s)	852
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	43, 333
BspPI	GGATC	3 cut(s)	90, 646, 706
BspT107I	GGYRCC	2 cut(s)	41, 331
BsrBI	CCGCTC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	360
BssECI	CCNNGG	2 cut(s)	37, 590
BssMI	GATC	4 cut(s)	82, 612, 638, 711
BssNI	GRCGYC	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	591
Bst4CI	ACNGT	1 cut(s)	172
BstACI	GRCGYC	1 cut(s)	42
BstC8I	GCNNGC	3 cut(s)	63, 844, 862
BstDEI	CTNAG	4 cut(s)	71, 378, 708, 806
BstFNI	CGCG	1 cut(s)	87
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	2 cut(s)	44, 89
BstKTI	GATC	4 cut(s)	85, 615, 641, 714
BstMBI	GATC	4 cut(s)	82, 612, 638, 711
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 263, 829
BstNI	CCWGG	1 cut(s)	591
BstNSI	RCATGY	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	589
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	2 cut(s)	241, 876
BstV2I	GAAGAC	1 cut(s)	365
BstX2I	RGATCY	2 cut(s)	612, 711
BstYI	RGATCY	2 cut(s)	612, 711
BsuI	GTATCC	1 cut(s)	597
BsuRI	GGCC	2 cut(s)	131, 792
Cac8I	GCNNGC	3 cut(s)	63, 844, 862
CfoI	GCGC	2 cut(s)	44, 89
CseI	GACGC	2 cut(s)	613, 835
Csp6I	GTAC	1 cut(s)	415
CviAII	CATG	3 cut(s)	28, 215, 529
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	4 cut(s)	71, 378, 708, 806
DinI	GGCGCC	1 cut(s)	43
DpnI	GATC	4 cut(s)	84, 614, 640, 713
DpnII	GATC	4 cut(s)	82, 612, 638, 711
EaeI	YGGCCR	2 cut(s)	129, 790
EciI	GGCGGA	1 cut(s)	42
Eco24I	GRGCYC	1 cut(s)	409
Eco32I	GATATC	1 cut(s)	427
Eco57I	CTGAAG	4 cut(s)	104, 431, 690, 771
EcoRII	CCWGG	1 cut(s)	589
EcoRV	GATATC	1 cut(s)	427
EcoT38I	GRGCYC	1 cut(s)	409
EgeI	GGCGCC	1 cut(s)	43
EheI	GGCGCC	1 cut(s)	43
FaeI	CATG	3 cut(s)	31, 218, 532
FaiI	YATR	9 cut(s)	29, 141, 149, 216, 285, 438, 530, 659, 783
FaqI	GGGAC	1 cut(s)	583
FatI	CATG	3 cut(s)	27, 214, 528
FauI	CCCGC	1 cut(s)	70
Fnu4HI	GCNGC	5 cut(s)	56, 59, 66, 255, 865
FriOI	GRGCYC	1 cut(s)	409
Fsp4HI	GCNGC	5 cut(s)	56, 59, 66, 255, 865
GlaI	GCGC	2 cut(s)	43, 88
GluI	GCNGC	5 cut(s)	56, 59, 66, 255, 865
GsuI	CTGGAG	1 cut(s)	821
HaeII	RGCGCY	1 cut(s)	45
HaeIII	GGCC	2 cut(s)	131, 792
HapII	CCGG	2 cut(s)	132, 853
HgaI	GACGC	2 cut(s)	613, 835
HhaI	GCGC	2 cut(s)	44, 89
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	3 cut(s)	31, 218, 532
Hin6I	GCGC	2 cut(s)	42, 87
HinP1I	GCGC	2 cut(s)	42, 87
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HindIII	AAGCTT	4 cut(s)	116, 464, 598, 682
HinfI	GANTC	1 cut(s)	459
HpaII	CCGG	2 cut(s)	132, 853
HphI	GGTGA	1 cut(s)	156
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	6 cut(s)	34, 123, 379, 391, 411, 768
Hpy188III	TCNNGA	5 cut(s)	175, 511, 616, 707, 853
Hpy8I	GTNNAC	1 cut(s)	319
HpyAV	CCTTC	4 cut(s)	59, 395, 553, 829
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4IV	ACGT	2 cut(s)	181, 521
HpyCH4V	TGCA	3 cut(s)	205, 257, 860
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 263, 829
HpyF3I	CTNAG	4 cut(s)	71, 378, 708, 806
HpySE526I	ACGT	2 cut(s)	181, 521
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	3 cut(s)	31, 218, 532
HspAI	GCGC	2 cut(s)	42, 87
KasI	GGCGCC	1 cut(s)	41
Kpn2I	TCCGGA	1 cut(s)	852
Kzo9I	GATC	4 cut(s)	82, 612, 638, 711
LmnI	GCTCC	3 cut(s)	772, 802, 829
Lsp1109I	GCAGC	2 cut(s)	241, 876
LweI	GCATC	1 cut(s)	192
MaeII	ACGT	2 cut(s)	181, 521
MaeIII	GTNAC	2 cut(s)	162, 872
MalI	GATC	4 cut(s)	84, 614, 640, 713
MbiI	CCGCTC	1 cut(s)	68
MboI	GATC	4 cut(s)	82, 612, 638, 711
MfeI	CAATTG	2 cut(s)	564, 877
MflI	RGATCY	2 cut(s)	612, 711
MhlI	GDGCHC	1 cut(s)	409
MlsI	TGGCCA	1 cut(s)	792
MluCI	AATT	5 cut(s)	312, 502, 564, 646, 877
MluNI	TGGCCA	1 cut(s)	792
Mly113I	GGCGCC	1 cut(s)	42
MmeI	TCCRAC	2 cut(s)	57, 204
MnlI	CCTC	9 cut(s)	47, 55, 73, 300, 373, 428, 714, 733, 860
Mox20I	TGGCCA	1 cut(s)	792
MroI	TCCGGA	1 cut(s)	852
MroXI	GAANNNNTTC	2 cut(s)	458, 756
MscI	TGGCCA	1 cut(s)	792
MseI	TTAA	2 cut(s)	99, 690
Msp20I	TGGCCA	1 cut(s)	792
MspI	CCGG	2 cut(s)	132, 853
MspR9I	CCNGG	1 cut(s)	591
MunI	CAATTG	2 cut(s)	564, 877
MvaI	CCWGG	1 cut(s)	591
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	3 cut(s)	74, 263, 829
NarI	GGCGCC	1 cut(s)	42
NdeII	GATC	4 cut(s)	82, 612, 638, 711
NlaIII	CATG	3 cut(s)	31, 218, 532
NlaIV	GGNNCC	2 cut(s)	43, 333
NmeAIII	GCCGAG	1 cut(s)	18
NmuCI	GTSAC	2 cut(s)	162, 872
NspI	RCATGY	1 cut(s)	31
PciI	ACATGT	1 cut(s)	27
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PdmI	GAANNNNTTC	2 cut(s)	458, 756
PfeI	GAWTC	1 cut(s)	459
PflMI	CCANNNNNTGG	1 cut(s)	799
PkrI	GCNGC	5 cut(s)	57, 60, 67, 256, 866
PluTI	GGCGCC	1 cut(s)	45
PscI	ACATGT	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	589
PspGI	CCWGG	1 cut(s)	589
PspN4I	GGNNCC	2 cut(s)	43, 333
PsuI	RGATCY	2 cut(s)	612, 711
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
SaqAI	TTAA	2 cut(s)	99, 690
SatI	GCNGC	5 cut(s)	56, 59, 66, 255, 865
Sau3AI	GATC	4 cut(s)	82, 612, 638, 711
ScrFI	CCNGG	1 cut(s)	591
SduI	GDGCHC	1 cut(s)	409
SfaNI	GCATC	1 cut(s)	192
SfoI	GGCGCC	1 cut(s)	43
SmlI	CTYRAG	3 cut(s)	107, 419, 467
SmoI	CTYRAG	3 cut(s)	107, 419, 467
Sse9I	AATT	5 cut(s)	312, 502, 564, 646, 877
SsiI	CCGC	6 cut(s)	53, 56, 59, 63, 66, 77
SspDI	GGCGCC	1 cut(s)	41
StyD4I	CCNGG	1 cut(s)	589
TaaI	ACNGT	1 cut(s)	172
TaiI	ACGT	2 cut(s)	184, 524
TaqI	TCGA	1 cut(s)	24
TasI	AATT	5 cut(s)	312, 502, 564, 646, 877
TauI	GCSGC	3 cut(s)	58, 61, 68
TfiI	GAWTC	1 cut(s)	459
Tru1I	TTAA	2 cut(s)	99, 690
Tru9I	TTAA	2 cut(s)	99, 690
TseFI	GTSAC	2 cut(s)	162, 872
TseI	GCWGC	2 cut(s)	254, 864
Tsp45I	GTSAC	2 cut(s)	162, 872
TspDTI	ATGAA	6 cut(s)	300, 371, 381, 414, 462, 558
TspGWI	ACGGA	1 cut(s)	587
Van91I	CCANNNNNTGG	1 cut(s)	799
XapI	RAATTY	2 cut(s)	502, 646
XceI	RCATGY	1 cut(s)	31
XmnI	GAANNNNTTC	2 cut(s)	458, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.