FvH4_6g33640

Belongs to the nucleosome assembly protein (NAP) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
26654387 .. 26658149
3763 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g33640.t7

Sequence Viewer

Length: 1134 bp
ATGAGTAGCAACAAAGATAACTTCGACATGGCCGACCTCGGCGCCTCCCTTCCAGCCGCCGCCGCCGCTCTTAGTGCGGAGGATCGTGCTGGTCTTGTTAATGCTCTCAAGGATAAGCTTCAGAGCTTGGCTGGACAGCATTCTGACATATTGGAAACTTTGTCGCCTACGGTCAGGAAACGTGTTGATGTGTTGAGAGAGATGCAGAGCCAACATGATGAGTTGGAAAAGAAGTTTTTCGAAGAGAGGGCTGCATTGGAAGCAAAATACCAGAAGCTCTATGAACCTCTCTACACTAAGAGGTATGAAATTGTCAACGGTGTAACTGAAGTTGAAGGAGTTAATCCTGAATCTGCAGTGGACCAAGGAGATAATGCCACCGAAGAGAAAGGGGTGCCGGATTTCTGGCTCACGGCAATGAAGACCAATGAAGTTCTTTCTGAGGAGATCTCAGAGCGTGATGAAGGGGCTCTGAAGTACCTCAAGGATATCAAGTGGTCTAGGATAGACGAACCAAAAGGATTCAAGCTTGAGTTTTTCTTCAATGCCAATCCTTATTTCAAAAATTCTGTATTGACAAAAACGTATCACATGATTGATGACGATGAACCTATTTTGGAGAAGGCAATTGGGACGGAGATTGATTGGTATCCTGGGAAGAGCTTGACGCAGAAGATCTTGAAGAAGAAGCCAAGAAAGGGATCAAAGAATGCTAAACCCATAACTAAAACTGAAGACTGTGAAAGCTTCTTTAACTTCTTCAACCCTCCTGAGATACCTGATACTGATGATGGATTTGATGAGGAAACTGCTGAAGAACTTCAAGGTCAGATGGAGCAGGATTACGACATTGGTTCCACAATAAGGGACAAAATTATTCCCCATGCTGTGTCATGGTTTACTGGGGAGGCTGTTCAGGATGAGTTTGAAGGTATGGAAGATGATGATGATGTAGATGAGGATGAAGATGAAGACGAGGAGGAAGATGAAGATGAAGAGGACGATGAGGATGATGATGACAATGATGAAGAGGAAGAGAAAGAAAGGAAAAAGCCATCTGCCGGAGCTAAGAAAAGTGTCAAGGCACAAGGAGCAGAAGGTGGCGAGCGTCCTCCAGAATGCAAGCAACAGTAG

Protein Analysis

378

Amino Acids

42.81

Weight (kDa)

4.32

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 1 - 236 2.9e-85 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000381)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 41, 394
AccBSI CCGCTC 1 cut(s) 68
AciI CCGC 5 cut(s) 57, 60, 63, 66, 77
AclWI GGATC 2 cut(s) 90, 709
AcoI YGGCCR 1 cut(s) 30
AcsI RAATTY 1 cut(s) 565
AcuI CTGAAG 5 cut(s) 104, 348, 494, 753, 834
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 1 cut(s) 479
AfiI CCNNNNNNNGG 3 cut(s) 698, 864, 1061
AflIII ACRYGT 1 cut(s) 181
AgsI TTSAA 8 cut(s) 335, 526, 544, 562, 682, 763, 824, 929
AjnI CCWGG 1 cut(s) 652
AjuI GAANNNNNNNTTGG 2 cut(s) 542, 574
AluBI AGCT 7 cut(s) 118, 126, 277, 529, 663, 747, 1067
AluI AGCT 7 cut(s) 118, 126, 277, 529, 663, 747, 1067
AlwI GGATC 2 cut(s) 90, 709
AoxI GGCC 1 cut(s) 30
ApeKI GCWGC 1 cut(s) 251
ApoI RAATTY 1 cut(s) 565
Asp700I GAANNNNTTC 2 cut(s) 236, 819
AspLEI GCGC 1 cut(s) 44
AspS9I GGNCC 1 cut(s) 361
AsuII TTCGAA 1 cut(s) 240
AvaII GGWCC 1 cut(s) 361
BanI GGYRCC 2 cut(s) 41, 394
BanII GRGCYC 1 cut(s) 472
BbsI GAAGAC 3 cut(s) 428, 741, 978
BbvI GCAGC 1 cut(s) 238
BccI CCATC 3 cut(s) 785, 826, 1063
BceAI ACGGC 1 cut(s) 429
BciT130I CCWGG 1 cut(s) 654
BciVI GTATCC 1 cut(s) 660
BfaI CTAG 1 cut(s) 501
BfmI CTRYAG 1 cut(s) 354
BfoI RGCGCY 1 cut(s) 45
BfuI GTATCC 1 cut(s) 660
BglII AGATCT 2 cut(s) 447, 675
BisI GCNGC 5 cut(s) 57, 60, 63, 66, 252
BlsI GCNGC 5 cut(s) 58, 61, 64, 67, 253
Bme1390I CCNGG 1 cut(s) 654
Bme18I GGWCC 1 cut(s) 361
BmgT120I GGNCC 1 cut(s) 361
BmiI GGNNCC 3 cut(s) 43, 396, 856
BmrFI CCNGG 1 cut(s) 654
BmrI ACTGGG 1 cut(s) 912
BmsI GCATC 1 cut(s) 192
BmuI ACTGGG 1 cut(s) 912
BpiI GAAGAC 3 cut(s) 428, 741, 978
BplI GAGNNNNNCTC 2 cut(s) 434, 466
BpmI CTGGAG 1 cut(s) 1098
Bpu14I TTCGAA 1 cut(s) 240
BpuEI CTTGAG 3 cut(s) 92, 467, 551
BsaBI GATNNNNATC 1 cut(s) 648
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 3 cut(s) 37, 364, 653
Bsc4I CCNNNNNNNGG 3 cut(s) 698, 864, 1061
Bse1I ACTGG 1 cut(s) 907
Bse3DI GCAATG 1 cut(s) 423
Bse8I GATNNNNATC 1 cut(s) 648
BseBI CCWGG 1 cut(s) 654
BseDI CCNNGG 3 cut(s) 37, 364, 653
BseGI GGATG 3 cut(s) 925, 967, 1015
BseJI GATNNNNATC 1 cut(s) 648
BseLI CCNNNNNNNGG 3 cut(s) 698, 864, 1061
BseMI GCAATG 1 cut(s) 423
BseMII CTCAG 3 cut(s) 432, 465, 762
BseNI ACTGG 1 cut(s) 907
BseRI GAGGAG 2 cut(s) 458, 992
BseXI GCAGC 1 cut(s) 238
BshFI GGCC 1 cut(s) 32
BshNI GGYRCC 2 cut(s) 41, 394
BsiSI CCGG 2 cut(s) 398, 1062
BslFI GGGAC 2 cut(s) 646, 881
BslI CCNNNNNNNGG 3 cut(s) 698, 864, 1061
BsmFI GGGAC 2 cut(s) 646, 881
BsmI GAATGC 3 cut(s) 139, 715, 1124
BsnI GGCC 1 cut(s) 32
Bsp119I TTCGAA 1 cut(s) 240
Bsp1286I GDGCHC 1 cut(s) 472
Bsp143I GATC 4 cut(s) 82, 447, 675, 701
BspACI CCGC 5 cut(s) 57, 60, 63, 66, 77
BspANI GGCC 1 cut(s) 32
BspCNI CTCAG 3 cut(s) 433, 464, 763
BspLI GGNNCC 3 cut(s) 43, 396, 856
BspMAI CTGCAG 1 cut(s) 358
BspPI GGATC 2 cut(s) 90, 709
BspQI GCTCTTC 1 cut(s) 653
BspT104I TTCGAA 1 cut(s) 240
BspT107I GGYRCC 2 cut(s) 41, 394
BsrBI CCGCTC 1 cut(s) 68
BsrDI GCAATG 1 cut(s) 423
BsrI ACTGG 1 cut(s) 907
BssECI CCNNGG 3 cut(s) 37, 364, 653
BssMI GATC 4 cut(s) 82, 447, 675, 701
BssNI GRCGYC 1 cut(s) 42
BssT1I CCWWGG 1 cut(s) 364
Bst2UI CCWGG 1 cut(s) 654
Bst4CI ACNGT 4 cut(s) 172, 320, 740, 1131
Bst6I CTCTTC 6 cut(s) 237, 378, 653, 990, 1023, 1029
BstACI GRCGYC 1 cut(s) 42
BstBI TTCGAA 1 cut(s) 240
BstC8I GCNNGC 2 cut(s) 1106, 1124
BstDEI CTNAG 6 cut(s) 71, 297, 441, 451, 771, 1068
BstF5I GGATG 3 cut(s) 925, 967, 1015
BstH2I RGCGCY 1 cut(s) 45
BstHHI GCGC 1 cut(s) 44
BstKTI GATC 4 cut(s) 85, 450, 678, 704
BstMBI GATC 4 cut(s) 82, 447, 675, 701
BstMWI GCNNNNNNNGC 5 cut(s) 62, 65, 74, 260, 1091
BstNI CCWGG 1 cut(s) 654
BstSCI CCNGG 1 cut(s) 652
BstSFI CTRYAG 1 cut(s) 354
BstV1I GCAGC 1 cut(s) 238
BstV2I GAAGAC 3 cut(s) 428, 741, 978
BstX2I RGATCY 2 cut(s) 447, 675
BstYI RGATCY 2 cut(s) 447, 675
BsuI GTATCC 1 cut(s) 660
BsuRI GGCC 1 cut(s) 32
BtsCI GGATG 3 cut(s) 925, 967, 1015
BtsI GCAGTG 1 cut(s) 363
BtsIMutI CAGTG 1 cut(s) 363
Cac8I GCNNGC 2 cut(s) 1106, 1124
CfoI GCGC 1 cut(s) 44
Cfr13I GGNCC 1 cut(s) 361
CseI GACGC 2 cut(s) 676, 1097
Csp6I GTAC 1 cut(s) 478
CviAII CATG 5 cut(s) 28, 215, 592, 884, 894
CviQI GTAC 1 cut(s) 478
DdeI CTNAG 6 cut(s) 71, 297, 441, 451, 771, 1068
DinI GGCGCC 1 cut(s) 43
DpnI GATC 4 cut(s) 84, 449, 677, 703
DpnII GATC 4 cut(s) 82, 447, 675, 701
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 6 cut(s) 237, 378, 653, 990, 1023, 1029
EarI CTCTTC 6 cut(s) 237, 378, 653, 990, 1023, 1029
Eco130I CCWWGG 1 cut(s) 364
Eco24I GRGCYC 1 cut(s) 472
Eco32I GATATC 1 cut(s) 490
Eco47I GGWCC 1 cut(s) 361
Eco57I CTGAAG 5 cut(s) 104, 348, 494, 753, 834
EcoRII CCWGG 1 cut(s) 652
EcoRV GATATC 1 cut(s) 490
EcoT14I CCWWGG 1 cut(s) 364
EcoT38I GRGCYC 1 cut(s) 472
EgeI GGCGCC 1 cut(s) 43
EheI GGCGCC 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 364
FaeI CATG 5 cut(s) 31, 218, 595, 887, 897
FaqI GGGAC 2 cut(s) 646, 881
FatI CATG 5 cut(s) 27, 214, 591, 883, 893
Fnu4HI GCNGC 5 cut(s) 57, 60, 63, 66, 252
FokI GGATG 3 cut(s) 932, 974, 1022
FriOI GRGCYC 1 cut(s) 472
Fsp4HI GCNGC 5 cut(s) 57, 60, 63, 66, 252
FspBI CTAG 1 cut(s) 501
GlaI GCGC 1 cut(s) 43
GluI GCNGC 5 cut(s) 57, 60, 63, 66, 252
GsuI CTGGAG 1 cut(s) 1098
HaeII RGCGCY 1 cut(s) 45
HaeIII GGCC 1 cut(s) 32
HapII CCGG 2 cut(s) 398, 1062
HgaI GACGC 2 cut(s) 676, 1097
HhaI GCGC 1 cut(s) 44
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 5 cut(s) 31, 218, 595, 887, 897
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HindIII AAGCTT 3 cut(s) 116, 527, 745
HinfI GANTC 2 cut(s) 350, 522
HpaII CCGG 2 cut(s) 398, 1062
Hpy166II GTNNAC 3 cut(s) 316, 361, 900
Hpy188I TCNGA 6 cut(s) 123, 145, 442, 454, 474, 831
Hpy188III TCNNGA 6 cut(s) 175, 347, 679, 770, 917, 1115
Hpy8I GTNNAC 3 cut(s) 316, 361, 900
HpyAV CCTTC 6 cut(s) 59, 329, 458, 616, 923, 1091
HpyCH4III ACNGT 4 cut(s) 172, 320, 740, 1131
HpyCH4IV ACGT 2 cut(s) 181, 584
HpyCH4V TGCA 4 cut(s) 205, 254, 356, 1122
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 65, 74, 260, 1091
HpyF3I CTNAG 6 cut(s) 71, 297, 441, 451, 771, 1068
HpySE526I ACGT 2 cut(s) 181, 584
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 5 cut(s) 31, 218, 595, 887, 897
HspAI GCGC 1 cut(s) 42
KasI GGCGCC 1 cut(s) 41
Kzo9I GATC 4 cut(s) 82, 447, 675, 701
LguI GCTCTTC 1 cut(s) 653
LmnI GCTCC 3 cut(s) 835, 1064, 1091
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 1 cut(s) 192
MaeI CTAG 1 cut(s) 501
MaeII ACGT 2 cut(s) 181, 584
MaeIII GTNAC 1 cut(s) 322
MalI GATC 4 cut(s) 84, 449, 677, 703
MbiI CCGCTC 1 cut(s) 68
MboI GATC 4 cut(s) 82, 447, 675, 701
MfeI CAATTG 1 cut(s) 627
MflI RGATCY 2 cut(s) 447, 675
MhlI GDGCHC 1 cut(s) 472
MluCI AATT 4 cut(s) 309, 565, 627, 873
Mly113I GGCGCC 1 cut(s) 42
MmeI TCCRAC 1 cut(s) 204
MroXI GAANNNNTTC 2 cut(s) 236, 819
MseI TTAA 3 cut(s) 99, 342, 753
MslI CAYNNNNRTG 1 cut(s) 416
MspI CCGG 2 cut(s) 398, 1062
MspR9I CCNGG 1 cut(s) 654
MunI CAATTG 1 cut(s) 627
Mva1269I GAATGC 3 cut(s) 139, 715, 1124
MvaI CCWGG 1 cut(s) 654
MwoI GCNNNNNNNGC 5 cut(s) 62, 65, 74, 260, 1091
NarI GGCGCC 1 cut(s) 42
NdeII GATC 4 cut(s) 82, 447, 675, 701
NlaIII CATG 5 cut(s) 31, 218, 595, 887, 897
NlaIV GGNNCC 3 cut(s) 43, 396, 856
NmeAIII GCCGAG 1 cut(s) 18
NspV TTCGAA 1 cut(s) 240
PciSI GCTCTTC 1 cut(s) 653
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PctI GAATGC 3 cut(s) 139, 715, 1124
PdmI GAANNNNTTC 2 cut(s) 236, 819
PfeI GAWTC 2 cut(s) 350, 522
PkrI GCNGC 5 cut(s) 58, 61, 64, 67, 253
PluTI GGCGCC 1 cut(s) 45
Psp6I CCWGG 1 cut(s) 652
PspGI CCWGG 1 cut(s) 652
PspN4I GGNNCC 3 cut(s) 43, 396, 856
PspPI GGNCC 1 cut(s) 361
PstI CTGCAG 1 cut(s) 358
PsuI RGATCY 2 cut(s) 447, 675
RsaI GTAC 1 cut(s) 479
RsaNI GTAC 1 cut(s) 478
RseI CAYNNNNRTG 1 cut(s) 416
SapI GCTCTTC 1 cut(s) 653
SaqAI TTAA 3 cut(s) 99, 342, 753
SatI GCNGC 5 cut(s) 57, 60, 63, 66, 252
Sau3AI GATC 4 cut(s) 82, 447, 675, 701
Sau96I GGNCC 1 cut(s) 361
ScrFI CCNGG 1 cut(s) 654
SduI GDGCHC 1 cut(s) 472
SfaNI GCATC 1 cut(s) 192
SfcI CTRYAG 1 cut(s) 354
SfoI GGCGCC 1 cut(s) 43
SfuI TTCGAA 1 cut(s) 240
SinI GGWCC 1 cut(s) 361
SmiMI CAYNNNNRTG 1 cut(s) 416
SmlI CTYRAG 3 cut(s) 107, 482, 530
SmoI CTYRAG 3 cut(s) 107, 482, 530
Sse9I AATT 4 cut(s) 309, 565, 627, 873
SsiI CCGC 5 cut(s) 57, 60, 63, 66, 77
SspDI GGCGCC 1 cut(s) 41
SspMI CTAG 1 cut(s) 501
StyD4I CCNGG 1 cut(s) 652
StyI CCWWGG 1 cut(s) 364
TaaI ACNGT 4 cut(s) 172, 320, 740, 1131
TaiI ACGT 2 cut(s) 184, 587
TaqI TCGA 2 cut(s) 24, 240
TasI AATT 4 cut(s) 309, 565, 627, 873
TauI GCSGC 4 cut(s) 59, 62, 65, 68
TfiI GAWTC 2 cut(s) 350, 522
Tru1I TTAA 3 cut(s) 99, 342, 753
Tru9I TTAA 3 cut(s) 99, 342, 753
TscAI CASTG 1 cut(s) 363
TseI GCWGC 1 cut(s) 251
TspGWI ACGGA 1 cut(s) 650
TspRI CASTG 1 cut(s) 363
VpaK11BI GGWCC 1 cut(s) 361
XapI RAATTY 1 cut(s) 565
XmnI GAANNNNTTC 2 cut(s) 236, 819
XspI CTAG 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.