Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Reverse (-)

61231776 .. 61233199

Gene Structure 1424 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51363

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGACGAAGCCAATGGAGAAAGGAGTGCCTGACTTTTGGCTGTCTGCGCTGAAGAATAATAAGAAACTTTTGATTATGAACCATGACGAACGCGCTCTCCAGTATCTGAACGATATCAAGTGGTCCAGGATTCATGATCCTAAGGGATTCAGGCTGGAATTTTTATTTGATCCTAATCCTTACTTTCGAAACTCCGTCCTGACAAAAACATATTACATGGTTGAAGAACATGTACCGATATGGAGCAAGGAAATCGGGACGGAGATTGATTGGTATCCCGGGCAATGCTTGACAATCAATCCAAGAACGGACCCAAAGAGTGCCAAGTCTATGACTCCAGCTGATATTTGTTCCAGCTTCTTTACGATTTTCAAACTTCCCCAACATGATGATTATACTGGTGCAGATATGGCTTCTATGTTCAAGACTAGGATAGAAAACGACCGTGAAATGGGCTTAACAATTCGAGACAAGATCATCCCTCACGCAGTGTCATGGTTCGCTGTTAATATAGACGAGCTTGATGATAGTGAAGACGACGATGACAGTGATCATGACTATCATTTTGACTTTGATAGTGATGATGAAGATGACGCGTACAAGAAGTATGCTGCTGCTTATAACAACAAGAAAGAAGAGGAAGATCGCAAAAGAAAGGTATATATGTGTATATTCTATATTTCTTCCTGGTCTCCAGCCCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

234

Amino Acids

27.6

Weight (kDa)

4.9

Isoelectric Point (pI)

41.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	4 - 168	3.3e-44	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	621
AccII	CGCG	2 cut(s)	93, 596
AclWI	GGATC	2 cut(s)	131, 164
AcsI	RAATTY	1 cut(s)	158
AcuI	CTGAAG	1 cut(s)	71
AdeI	CACNNNGTG	1 cut(s)	490
AfaI	GTAC	2 cut(s)	234, 599
AfiI	CCNNNNNNNGG	1 cut(s)	451
AflIII	ACRYGT	2 cut(s)	229, 594
AgsI	TTSAA	3 cut(s)	224, 373, 424
AjnI	CCWGG	2 cut(s)	125, 686
AloI	GAACNNNNNNTCC	2 cut(s)	81, 113
AluBI	AGCT	3 cut(s)	341, 357, 520
AluI	AGCT	3 cut(s)	341, 357, 520
Alw26I	GTCTC	2 cut(s)	462, 696
AlwI	GGATC	2 cut(s)	131, 164
AlwNI	CAGNNNCTG	1 cut(s)	106
Ama87I	CYCGRG	1 cut(s)	278
ApeKI	GCWGC	2 cut(s)	611, 614
ApoI	RAATTY	1 cut(s)	158
ArsI	GACNNNNNNTTYG	2 cut(s)	548, 580
AspLEI	GCGC	2 cut(s)	49, 95
AspS9I	GGNCC	2 cut(s)	123, 310
AsuC2I	CCSGG	2 cut(s)	279, 280
AsuII	TTCGAA	1 cut(s)	187
AvaI	CYCGRG	1 cut(s)	278
AvaII	GGWCC	2 cut(s)	123, 310
AxyI	CCTNAGG	1 cut(s)	141
BarI	GAAGNNNNNNTAC	2 cut(s)	216, 248
BbsI	GAAGAC	1 cut(s)	540
BbvI	GCAGC	2 cut(s)	598, 601
BcgI	CGANNNNNNTGC	2 cut(s)	235, 269
BciT130I	CCWGG	2 cut(s)	127, 688
BciVI	GTATCC	1 cut(s)	285
BclI	TGATCA	1 cut(s)	550
BcnI	CCSGG	2 cut(s)	279, 280
BcoDI	GTCTC	2 cut(s)	462, 696
BfaI	CTAG	2 cut(s)	429, 703
BfuI	GTATCC	1 cut(s)	285
BisI	GCNGC	2 cut(s)	612, 615
BlsI	GCNGC	2 cut(s)	613, 616
Bme1390I	CCNGG	4 cut(s)	127, 279, 280, 688
Bme18I	GGWCC	2 cut(s)	123, 310
BmeT110I	CYCGRG	1 cut(s)	278
BmgT120I	GGNCC	2 cut(s)	123, 310
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	4 cut(s)	127, 279, 280, 688
BpiI	GAAGAC	1 cut(s)	540
BpmI	CTGGAG	3 cut(s)	83, 321, 678
Bpu14I	TTCGAA	1 cut(s)	187
BpuMI	CCSGG	2 cut(s)	279, 280
BsaBI	GATNNNNATC	2 cut(s)	174, 273
BsaI	GGTCTC	1 cut(s)	696
BsaJI	CCNNGG	1 cut(s)	278
BsaXI	ACNNNNNCTCC	2 cut(s)	81, 111
Bsc4I	CCNNNNNNNGG	1 cut(s)	451
Bse1I	ACTGG	2 cut(s)	100, 403
Bse21I	CCTNAGG	1 cut(s)	141
Bse3DI	GCAATG	1 cut(s)	290
Bse8I	GATNNNNATC	2 cut(s)	174, 273
BseBI	CCWGG	2 cut(s)	127, 688
BseDI	CCNNGG	1 cut(s)	278
BseGI	GGATG	1 cut(s)	477
BseJI	GATNNNNATC	2 cut(s)	174, 273
BseLI	CCNNNNNNNGG	1 cut(s)	451
BseMI	GCAATG	1 cut(s)	290
BseNI	ACTGG	2 cut(s)	100, 403
BseXI	GCAGC	2 cut(s)	598, 601
BsgI	GTGCAG	1 cut(s)	423
Bsh1236I	CGCG	2 cut(s)	93, 596
Bsh1285I	CGRYCG	1 cut(s)	445
BsiEI	CGRYCG	1 cut(s)	445
BsiHKCI	CYCGRG	1 cut(s)	278
BsiSI	CCGG	1 cut(s)	279
BslFI	GGGAC	1 cut(s)	271
BslI	CCNNNNNNNGG	1 cut(s)	451
BsmAI	GTCTC	2 cut(s)	462, 696
BsmFI	GGGAC	1 cut(s)	271
Bso31I	GGTCTC	1 cut(s)	696
BsoBI	CYCGRG	1 cut(s)	278
Bsp119I	TTCGAA	1 cut(s)	187
Bsp143I	GATC	5 cut(s)	136, 169, 474, 550, 643
BspFNI	CGCG	2 cut(s)	93, 596
BspHI	TCATGA	2 cut(s)	133, 553
BspLI	GGNNCC	1 cut(s)	312
BspPI	GGATC	2 cut(s)	131, 164
BspT104I	TTCGAA	1 cut(s)	187
BspTNI	GGTCTC	1 cut(s)	696
BsrDI	GCAATG	1 cut(s)	290
BsrI	ACTGG	2 cut(s)	100, 403
BssECI	CCNNGG	1 cut(s)	278
BssMI	GATC	5 cut(s)	136, 169, 474, 550, 643
Bst2UI	CCWGG	2 cut(s)	127, 688
Bst4CI	ACNGT	2 cut(s)	446, 548
Bst6I	CTCTTC	1 cut(s)	630
BstBI	TTCGAA	1 cut(s)	187
BstDEI	CTNAG	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	477
BstFNI	CGCG	2 cut(s)	93, 596
BstHHI	GCGC	2 cut(s)	49, 95
BstKTI	GATC	5 cut(s)	139, 172, 477, 553, 646
BstMAI	GTCTC	2 cut(s)	462, 696
BstMBI	GATC	5 cut(s)	136, 169, 474, 550, 643
BstMCI	CGRYCG	1 cut(s)	445
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 410
BstNI	CCWGG	2 cut(s)	127, 688
BstNSI	RCATGY	1 cut(s)	233
BstSCI	CCNGG	4 cut(s)	125, 277, 278, 686
BstUI	CGCG	2 cut(s)	93, 596
BstV1I	GCAGC	2 cut(s)	598, 601
BstV2I	GAAGAC	1 cut(s)	540
Bsu36I	CCTNAGG	1 cut(s)	141
BsuI	GTATCC	1 cut(s)	285
BtsCI	GGATG	1 cut(s)	477
BtsI	GCAGTG	1 cut(s)	495
BtsIMutI	CAGTG	2 cut(s)	495, 553
CaiI	CAGNNNCTG	1 cut(s)	106
CciI	TCATGA	2 cut(s)	133, 553
CfoI	GCGC	2 cut(s)	49, 95
Cfr13I	GGNCC	2 cut(s)	123, 310
Cfr9I	CCCGGG	1 cut(s)	278
CseI	GACGC	1 cut(s)	602
Csp6I	GTAC	2 cut(s)	233, 598
CviAII	CATG	7 cut(s)	83, 134, 217, 230, 386, 495, 554
CviJI	RGCY	9 cut(s)	10, 40, 154, 341, 357, 413, 456, 520, 698
CviKI_1	RGCY	9 cut(s)	10, 40, 154, 341, 357, 413, 456, 520, 698
CviQI	GTAC	2 cut(s)	233, 598
DdeI	CTNAG	1 cut(s)	141
DpnI	GATC	5 cut(s)	138, 171, 476, 552, 645
DpnII	GATC	5 cut(s)	136, 169, 474, 550, 643
DraIII	CACNNNGTG	1 cut(s)	490
Eam1104I	CTCTTC	1 cut(s)	630
EarI	CTCTTC	1 cut(s)	630
Eco31I	GGTCTC	1 cut(s)	696
Eco32I	GATATC	1 cut(s)	115
Eco47I	GGWCC	2 cut(s)	123, 310
Eco57I	CTGAAG	1 cut(s)	71
Eco81I	CCTNAGG	1 cut(s)	141
Eco88I	CYCGRG	1 cut(s)	278
EcoRII	CCWGG	2 cut(s)	125, 686
EcoRV	GATATC	1 cut(s)	115
FaeI	CATG	7 cut(s)	86, 137, 220, 233, 389, 498, 557
FaqI	GGGAC	1 cut(s)	271
FatI	CATG	7 cut(s)	82, 133, 216, 229, 385, 494, 553
FbaI	TGATCA	1 cut(s)	550
Fnu4HI	GCNGC	2 cut(s)	612, 615
FokI	GGATG	1 cut(s)	464
Fsp4HI	GCNGC	2 cut(s)	612, 615
FspBI	CTAG	2 cut(s)	429, 703
GlaI	GCGC	2 cut(s)	48, 94
GluI	GCNGC	2 cut(s)	612, 615
GsuI	CTGGAG	3 cut(s)	83, 321, 678
HapII	CCGG	1 cut(s)	279
HgaI	GACGC	1 cut(s)	602
HhaI	GCGC	2 cut(s)	49, 95
Hin1II	CATG	7 cut(s)	86, 137, 220, 233, 389, 498, 557
Hin6I	GCGC	2 cut(s)	47, 93
HinP1I	GCGC	2 cut(s)	47, 93
HinfI	GANTC	3 cut(s)	130, 147, 334
HpaII	CCGG	1 cut(s)	279
Hpy188I	TCNGA	1 cut(s)	108
Hpy188III	TCNNGA	6 cut(s)	134, 199, 256, 424, 467, 554
Hpy99I	CGWCG	1 cut(s)	542
HpyCH4III	ACNGT	2 cut(s)	446, 548
HpyCH4V	TGCA	1 cut(s)	404
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 410
HpyF3I	CTNAG	1 cut(s)	141
Hsp92II	CATG	7 cut(s)	86, 137, 220, 233, 389, 498, 557
HspAI	GCGC	2 cut(s)	47, 93
Ksp22I	TGATCA	1 cut(s)	550
Kzo9I	GATC	5 cut(s)	136, 169, 474, 550, 643
LmnI	GCTCC	1 cut(s)	243
Lsp1109I	GCAGC	2 cut(s)	598, 601
MaeI	CTAG	2 cut(s)	429, 703
MalI	GATC	5 cut(s)	138, 171, 476, 552, 645
MboI	GATC	5 cut(s)	136, 169, 474, 550, 643
MboII	GAAGA	7 cut(s)	64, 236, 545, 599, 647, 653, 675
MluCI	AATT	2 cut(s)	158, 462
MluI	ACGCGT	1 cut(s)	594
MlyI	GAGTC	1 cut(s)	328
MnlI	CCTC	2 cut(s)	492, 631
MseI	TTAA	2 cut(s)	458, 507
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	1 cut(s)	279
MspR9I	CCNGG	4 cut(s)	127, 279, 280, 688
MvaI	CCWGG	2 cut(s)	127, 688
MvnI	CGCG	2 cut(s)	93, 596
MwoI	GCNNNNNNNGC	2 cut(s)	46, 410
NciI	CCSGG	2 cut(s)	279, 280
NdeII	GATC	5 cut(s)	136, 169, 474, 550, 643
NlaIII	CATG	7 cut(s)	86, 137, 220, 233, 389, 498, 557
NlaIV	GGNNCC	1 cut(s)	312
NspI	RCATGY	1 cut(s)	233
NspV	TTCGAA	1 cut(s)	187
PagI	TCATGA	2 cut(s)	133, 553
PciI	ACATGT	1 cut(s)	229
PfeI	GAWTC	2 cut(s)	130, 147
PfoI	TCCNGGA	1 cut(s)	125
PkrI	GCNGC	2 cut(s)	613, 616
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
PscI	ACATGT	1 cut(s)	229
PsiI	TTATAA	1 cut(s)	621
Psp6I	CCWGG	2 cut(s)	125, 686
PspGI	CCWGG	2 cut(s)	125, 686
PspN4I	GGNNCC	1 cut(s)	312
PspPI	GGNCC	2 cut(s)	123, 310
PstNI	CAGNNNCTG	1 cut(s)	106
PvuII	CAGCTG	1 cut(s)	341
RsaI	GTAC	2 cut(s)	234, 599
RsaNI	GTAC	2 cut(s)	233, 598
SaqAI	TTAA	2 cut(s)	458, 507
SatI	GCNGC	2 cut(s)	612, 615
Sau3AI	GATC	5 cut(s)	136, 169, 474, 550, 643
Sau96I	GGNCC	2 cut(s)	123, 310
SchI	GAGTC	1 cut(s)	328
ScrFI	CCNGG	4 cut(s)	127, 279, 280, 688
SetI	ASST	4 cut(s)	343, 359, 522, 660
SfuI	TTCGAA	1 cut(s)	187
SinI	GGWCC	2 cut(s)	123, 310
SmaI	CCCGGG	1 cut(s)	280
Sse9I	AATT	2 cut(s)	158, 462
SspMI	CTAG	2 cut(s)	429, 703
StyD4I	CCNGG	4 cut(s)	125, 277, 278, 686
TaaI	ACNGT	2 cut(s)	446, 548
TaqI	TCGA	2 cut(s)	187, 466
TasI	AATT	2 cut(s)	158, 462
TfiI	GAWTC	2 cut(s)	130, 147
Tru1I	TTAA	2 cut(s)	458, 507
Tru9I	TTAA	2 cut(s)	458, 507
TscAI	CASTG	2 cut(s)	495, 553
TseI	GCWGC	2 cut(s)	611, 614
TspDTI	ATGAA	3 cut(s)	92, 122, 600
TspGWI	ACGGA	3 cut(s)	184, 275, 323
TspMI	CCCGGG	1 cut(s)	278
TspRI	CASTG	2 cut(s)	495, 553
VpaK11BI	GGWCC	2 cut(s)	123, 310
XapI	RAATTY	1 cut(s)	158
XceI	RCATGY	1 cut(s)	233
XmaI	CCCGGG	1 cut(s)	278
XspI	CTAG	2 cut(s)	429, 703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.