Rw3G004130

Belongs to the nucleosome assembly protein (NAP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000381
Physical Location & Seq
Forward (+)
3580215 .. 3582527
2313 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G004130.1

Sequence Viewer

Length: 612 bp
ATGAAGAACATTGAAGTGCTTGCTCGGAAGATTACAAAACTGGATGAAGGGGCTTTCCAACATCTAAGGAACATCCTTTGTACAGAGACTCCTACTGGATTCAAGCTTGACTTCTTCTTTGATTCCAATCCTTACTTTAAAGATTCCGTGCTCACGAAAACATTTATGATAATTCGTGGTAACAAGCATGAAGTGACGAATGCAATTGGGATGGAAATTGAGTGGTATCTTGGTAAAAGCCTGACCGACACAGAAAATGGTGACAGCTTCTTCAACTTTTTTAAGACCCCTGTTGCCAACAGTACTGCTGAAGATGTCCAAACACTAATGGATCATGATTATTGCATAGGTTCAACAATTCGAGACAAAATCATTGAGAATAAGGATTTGGCGAAGGATTTGTTACAGGAGCTGCGGTTCTTTAGACATGGTAACTACACTGTATACAAGCATCGTCTGCTGAGATTACGGTATCTCGAGGTTGGAGCACAAGTGGAAGCAGCATACCTGAACCTTTACAAACCTATATACGAAAAGCCTAATCCTTATTTTGAAAATGAAGTCCTGACCAAATCATATAAGCGGCCTCTGATGGAGAAAACAACTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAP

Protein Analysis

203

Amino Acids

23.76

Weight (kDa)

6.97

Isoelectric Point (pI)

28.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 1 - 83 4.9e-19 Nucleosome assembly protein (NAP)
NAP PF00956 81 - 125 6.6e-07 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000381)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 444
AciI CCGC 2 cut(s) 415, 583
AclWI GGATC 1 cut(s) 339
AcuI CTGAAG 1 cut(s) 330
AfaI GTAC 2 cut(s) 82, 304
AgsI TTSAA 5 cut(s) 14, 103, 274, 354, 554
AjuI GAANNNNNNNTTGG 2 cut(s) 371, 403
AloI GAACNNNNNNTCC 2 cut(s) 401, 433
AluBI AGCT 3 cut(s) 106, 267, 412
AluI AGCT 3 cut(s) 106, 267, 412
Alw21I GWGCWC 2 cut(s) 153, 490
Alw26I GTCTC 2 cut(s) 80, 357
AlwI GGATC 1 cut(s) 339
AlwNI CAGNNNCTG 1 cut(s) 412
Ama87I CYCGRG 1 cut(s) 476
AoxI GGCC 1 cut(s) 584
ApeKI GCWGC 2 cut(s) 412, 500
ArsI GACNNNNNNTTYG 2 cut(s) 101, 133
AsuHPI GGTGA 1 cut(s) 272
AvaI CYCGRG 1 cut(s) 476
Bbv12I GWGCWC 2 cut(s) 153, 490
BbvI GCAGC 2 cut(s) 399, 512
BccI CCATC 2 cut(s) 205, 586
BcoDI GTCTC 2 cut(s) 80, 357
BisI GCNGC 3 cut(s) 413, 501, 584
BlsI GCNGC 3 cut(s) 414, 502, 585
BmcAI AGTACT 1 cut(s) 304
BmeT110I CYCGRG 1 cut(s) 476
BmsI GCATC 1 cut(s) 460
BsaBI GATNNNNATC 1 cut(s) 126
BsaXI ACNNNNNCTCC 6 cut(s) 73, 103, 401, 431, 477, 507
Bse1I ACTGG 3 cut(s) 45, 100, 610
Bse8I GATNNNNATC 1 cut(s) 126
BseGI GGATG 3 cut(s) 49, 72, 216
BseJI GATNNNNATC 1 cut(s) 126
BseMII CTCAG 1 cut(s) 452
BseNI ACTGG 3 cut(s) 45, 100, 610
BseXI GCAGC 2 cut(s) 399, 512
BshFI GGCC 1 cut(s) 586
BsiHKAI GWGCWC 2 cut(s) 153, 490
BsiHKCI CYCGRG 1 cut(s) 476
BsmAI GTCTC 2 cut(s) 80, 357
BsmI GAATGC 1 cut(s) 205
BsnI GGCC 1 cut(s) 586
BsoBI CYCGRG 1 cut(s) 476
Bsp1286I GDGCHC 2 cut(s) 153, 490
Bsp1407I TGTACA 1 cut(s) 80
Bsp143I GATC 1 cut(s) 331
BspACI CCGC 2 cut(s) 415, 583
BspANI GGCC 1 cut(s) 586
BspCNI CTCAG 1 cut(s) 453
BspHI TCATGA 1 cut(s) 334
BspPI GGATC 1 cut(s) 339
BsrGI TGTACA 1 cut(s) 80
BsrI ACTGG 3 cut(s) 45, 100, 610
BssMI GATC 1 cut(s) 331
BssNAI GTATAC 1 cut(s) 445
Bst1107I GTATAC 1 cut(s) 445
Bst4CI ACNGT 3 cut(s) 302, 442, 471
BstAPI GCANNNNNTGC 1 cut(s) 457
BstAUI TGTACA 1 cut(s) 80
BstC8I GCNNGC 1 cut(s) 21
BstDEI CTNAG 2 cut(s) 65, 461
BstF5I GGATG 3 cut(s) 49, 72, 216
BstKTI GATC 1 cut(s) 334
BstMAI GTCTC 2 cut(s) 80, 357
BstMBI GATC 1 cut(s) 331
BstMWI GCNNNNNNNGC 1 cut(s) 457
BstV1I GCAGC 2 cut(s) 399, 512
BstZ17I GTATAC 1 cut(s) 445
BsuRI GGCC 1 cut(s) 586
BtsCI GGATG 3 cut(s) 49, 72, 216
BtsIMutI CAGTG 1 cut(s) 438
Cac8I GCNNGC 1 cut(s) 21
CaiI CAGNNNCTG 1 cut(s) 412
CciI TCATGA 1 cut(s) 334
Csp6I GTAC 2 cut(s) 81, 303
CviAII CATG 3 cut(s) 188, 335, 428
CviJI RGCY 7 cut(s) 53, 106, 240, 267, 412, 538, 586
CviKI_1 RGCY 7 cut(s) 53, 106, 240, 267, 412, 538, 586
CviQI GTAC 2 cut(s) 81, 303
DdeI CTNAG 2 cut(s) 65, 461
DpnI GATC 1 cut(s) 333
DpnII GATC 1 cut(s) 331
DraI TTTAAA 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 330
Eco88I CYCGRG 1 cut(s) 476
FaeI CATG 3 cut(s) 191, 338, 431
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FatI CATG 3 cut(s) 187, 334, 427
FblI GTMKAC 1 cut(s) 444
Fnu4HI GCNGC 3 cut(s) 413, 501, 584
FokI GGATG 3 cut(s) 56, 59, 223
Fsp4HI GCNGC 3 cut(s) 413, 501, 584
GluI GCNGC 3 cut(s) 413, 501, 584
HaeIII GGCC 1 cut(s) 586
Hin1II CATG 3 cut(s) 191, 338, 431
HindIII AAGCTT 1 cut(s) 104
HinfI GANTC 4 cut(s) 88, 99, 122, 143
HphI GGTGA 1 cut(s) 272
Hpy166II GTNNAC 1 cut(s) 445
Hpy188I TCNGA 2 cut(s) 27, 591
Hpy188III TCNNGA 5 cut(s) 154, 335, 362, 476, 565
Hpy8I GTNNAC 1 cut(s) 445
HpyAV CCTTC 2 cut(s) 41, 388
HpyCH4III ACNGT 3 cut(s) 302, 442, 471
HpyCH4V TGCA 2 cut(s) 203, 345
HpyF10VI GCNNNNNNNGC 1 cut(s) 457
HpyF3I CTNAG 2 cut(s) 65, 461
Hsp92II CATG 3 cut(s) 191, 338, 431
Kzo9I GATC 1 cut(s) 331
LmnI GCTCC 2 cut(s) 409, 485
LpnPI CCDG 8 cut(s) 26, 81, 254, 303, 392, 521, 578, 591
Lsp1109I GCAGC 2 cut(s) 399, 512
LweI GCATC 1 cut(s) 460
MaeIII GTNAC 5 cut(s) 179, 193, 260, 402, 431
MalI GATC 1 cut(s) 333
MboI GATC 1 cut(s) 331
MboII GAAGA 5 cut(s) 16, 40, 106, 262, 323
MfeI CAATTG 1 cut(s) 204
MhlI GDGCHC 2 cut(s) 153, 490
MluCI AATT 4 cut(s) 171, 204, 216, 357
MlyI GAGTC 1 cut(s) 82
MmeI TCCRAC 2 cut(s) 82, 463
MnlI CCTC 2 cut(s) 472, 597
MseI TTAA 2 cut(s) 138, 282
MslI CAYNNNNRTG 1 cut(s) 14
MunI CAATTG 1 cut(s) 204
Mva1269I GAATGC 1 cut(s) 205
MwoI GCNNNNNNNGC 1 cut(s) 457
NdeII GATC 1 cut(s) 331
NlaIII CATG 3 cut(s) 191, 338, 431
NmuCI GTSAC 2 cut(s) 193, 260
PaeR7I CTCGAG 1 cut(s) 476
PagI TCATGA 1 cut(s) 334
PctI GAATGC 1 cut(s) 205
PfeI GAWTC 3 cut(s) 99, 122, 143
PkrI GCNGC 3 cut(s) 414, 502, 585
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
PstNI CAGNNNCTG 1 cut(s) 412
RsaI GTAC 2 cut(s) 82, 304
RsaNI GTAC 2 cut(s) 81, 303
RseI CAYNNNNRTG 1 cut(s) 14
SaqAI TTAA 2 cut(s) 138, 282
SatI GCNGC 3 cut(s) 413, 501, 584
Sau3AI GATC 1 cut(s) 331
ScaI AGTACT 1 cut(s) 304
SchI GAGTC 1 cut(s) 82
SduI GDGCHC 2 cut(s) 153, 490
SetI ASST 8 cut(s) 108, 269, 352, 414, 483, 510, 516, 526
SfaNI GCATC 1 cut(s) 460
Sfr274I CTCGAG 1 cut(s) 476
SlaI CTCGAG 1 cut(s) 476
SmiMI CAYNNNNRTG 1 cut(s) 14
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
Sse9I AATT 4 cut(s) 171, 204, 216, 357
SsiI CCGC 2 cut(s) 415, 583
TaaI ACNGT 3 cut(s) 302, 442, 471
TaqI TCGA 2 cut(s) 361, 477
TaqII GACCGA 1 cut(s) 260
TasI AATT 4 cut(s) 171, 204, 216, 357
TatI WGTACW 2 cut(s) 80, 302
TauI GCSGC 1 cut(s) 586
TfiI GAWTC 3 cut(s) 99, 122, 143
Tru1I TTAA 2 cut(s) 138, 282
Tru9I TTAA 2 cut(s) 138, 282
TscAI CASTG 1 cut(s) 445
TseFI GTSAC 2 cut(s) 193, 260
TseI GCWGC 2 cut(s) 412, 500
Tsp45I GTSAC 2 cut(s) 193, 260
TspDTI ATGAA 4 cut(s) 17, 60, 204, 573
TspGWI ACGGA 1 cut(s) 136
TspRI CASTG 1 cut(s) 445
XhoI CTCGAG 1 cut(s) 476
XmiI GTMKAC 1 cut(s) 444
ZrmI AGTACT 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.