Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Forward (+)

17038040 .. 17041377

Gene Structure 3338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1192000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGAGCAGCAACGAGGATAACTTTGATATGGCCGAGCTCGACTCCTCCCTCCCCGCCGCCGCAGCCGCTCTGAGTGCAGAGGATCGTGATGGCCTTGTGAATGCTCTCAAGGATAAGATTCAGAGCATGGCAGGACAGCAGACCGACGTCTTGGAAACTTTGTCACCCATCGTCAGGAAGCGTGTTCAGGTTCTGAGGGAGATACAGAGCCAACATGATGAGATTGAAACAAAATTTTTTGAGGAGAAAGCTGCATTGGAAGCAAAATACCAGAAGCTTTATGAACCTCTCTACACTAAGAGATATGAGATTGTTAATGGTATAACTGAAATTGAAGGAGTGAAAAATGAAGCTGCAATGGACCAAGAAGGAGACGAGGACATCGAAGAGAAAGGAGTGCCTGACTTTTGGCTTACTGCAATGAAGACTAATGACGTACTTTCTGAGGAGATTACCGAGCGTGATGAAGGGGCACTCAAGCATCTCAAAGATATCAAGTGGTCTAGGATAGATGATCCAAAAGGATTCAAGCTGGAGTTCTTCTTTGATACTAATCCATATTTCAAAAATTCCATCCTGACAAAAACATATCACATGGTCGACGAGAACGAGCCTATTTTGGAGAAGGCTATTGGGACTGAGATCGAATGGTATCCTGGTAAATGCTTGACACAGAAGCTTTTGAAGAAGAAGCCAAGAAAGGGATCGAAGAATGCGAAACCTGTGACCAAAACTGAAGATTGTGCAAGCTTCTTTAACTTCTTTAGCCCTCCTGAGGTCCCTAAGGAGGACGAGGATCTTGATGAAGAGTCTGCGGAAGAACTCCAAGCTCAGATGGAACAGGATTATGACATTGGTTCAACAATTCGAGACAAAATCATTCCTCATGCAACATCATGGTTCACTGGAGAGGCTGTTCATGGGGATGGGTTTGACGATTCAGATGATGACGACGAGGACGATGAGTTATACGATGACGATGATGAAGACGAAGAGGATGTGGACGATGACGAGGAAGAGGAGGATAAGGGCACGAAAAAGAAAAGGGGTAATGTGCAAGGTGCAGAAGGTCAGCAAGGCGAGCGGCCTGCGGAGTGCAAGCAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

370

Amino Acids

42.08

Weight (kDa)

4.32

Isoelectric Point (pI)

48.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	60 - 304	2.8e-87	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
AccBSI	CCGCTC	2 cut(s)	68, 1084
AccI	GTMKAC	1 cut(s)	600
AciI	CCGC	7 cut(s)	54, 57, 60, 66, 815, 1084, 1091
AclWI	GGATC	4 cut(s)	90, 509, 712, 804
AcoI	YGGCCR	1 cut(s)	30
AcsI	RAATTY	2 cut(s)	233, 568
AcuI	CTGAAG	1 cut(s)	756
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	1 cut(s)	438
AfiI	CCNNNNNNNGG	4 cut(s)	174, 701, 775, 787
AgsI	TTSAA	6 cut(s)	227, 335, 529, 565, 685, 861
AjnI	CCWGG	1 cut(s)	655
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AloI	GAACNNNNNNTCC	2 cut(s)	900, 932
AluBI	AGCT	8 cut(s)	37, 251, 277, 353, 532, 679, 750, 830
AluI	AGCT	8 cut(s)	37, 251, 277, 353, 532, 679, 750, 830
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	2 cut(s)	366, 864
AlwI	GGATC	4 cut(s)	90, 509, 712, 804
AlwNI	CAGNNNCTG	1 cut(s)	193
AoxI	GGCC	3 cut(s)	30, 91, 1085
ApeKI	GCWGC	5 cut(s)	6, 62, 251, 353, 1102
ApoI	RAATTY	2 cut(s)	233, 568
AspS9I	GGNCC	2 cut(s)	361, 778
AsuHPI	GGTGA	1 cut(s)	156
AvaII	GGWCC	2 cut(s)	361, 778
AxyI	CCTNAGG	2 cut(s)	774, 783
BaeGI	GKGCMC	2 cut(s)	475, 1034
BanII	GRGCYC	1 cut(s)	39
BbsI	GAAGAC	2 cut(s)	431, 993
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	4 cut(s)	18, 74, 238, 340
BccI	CCATC	5 cut(s)	83, 176, 581, 829, 920
BcgI	CGANNNNNNTGC	2 cut(s)	1070, 1104
BciT130I	CCWGG	1 cut(s)	657
BciVI	GTATCC	1 cut(s)	663
BcoDI	GTCTC	2 cut(s)	366, 864
BfaI	CTAG	1 cut(s)	504
BfuI	GTATCC	1 cut(s)	663
BisI	GCNGC	9 cut(s)	7, 57, 60, 63, 66, 252, 354, 1085, 1103
BlsI	GCNGC	9 cut(s)	8, 58, 61, 64, 67, 253, 355, 1086, 1104
Bme1390I	CCNGG	1 cut(s)	657
Bme18I	GGWCC	2 cut(s)	361, 778
BmgT120I	GGNCC	2 cut(s)	361, 778
BmiI	GGNNCC	1 cut(s)	780
BmrFI	CCNGG	1 cut(s)	657
BmsI	GCATC	1 cut(s)	490
BoxI	GACNNNNGTC	1 cut(s)	146
BpiI	GAAGAC	2 cut(s)	431, 993
BplI	GAGNNNNNCTC	2 cut(s)	26, 58
BpmI	CTGGAG	2 cut(s)	554, 927
BpuEI	CTTGAG	2 cut(s)	92, 461
BsaBI	GATNNNNATC	1 cut(s)	552
BsaHI	GRCGYC	1 cut(s)	147
BsaXI	ACNNNNNCTCC	2 cut(s)	900, 930
Bsc4I	CCNNNNNNNGG	4 cut(s)	174, 701, 775, 787
Bse1I	ACTGG	1 cut(s)	910
Bse21I	CCTNAGG	2 cut(s)	774, 783
Bse3DI	GCAATG	2 cut(s)	363, 426
Bse8I	GATNNNNATC	1 cut(s)	552
BseBI	CCWGG	1 cut(s)	657
BseGI	GGATG	3 cut(s)	573, 931, 1003
BseJI	GATNNNNATC	1 cut(s)	552
BseLI	CCNNNNNNNGG	4 cut(s)	174, 701, 775, 787
BseMI	GCAATG	2 cut(s)	363, 426
BseMII	CTCAG	6 cut(s)	62, 185, 435, 630, 765, 845
BseNI	ACTGG	1 cut(s)	910
BseRI	GAGGAG	4 cut(s)	34, 257, 461, 1034
BseSI	GKGCMC	2 cut(s)	475, 1034
BseXI	GCAGC	4 cut(s)	18, 74, 238, 340
BsgI	GTGCAG	2 cut(s)	96, 1083
BshFI	GGCC	3 cut(s)	32, 93, 1087
BsiHKAI	GWGCWC	1 cut(s)	39
BslFI	GGGAC	2 cut(s)	649, 764
BslI	CCNNNNNNNGG	4 cut(s)	174, 701, 775, 787
BsmAI	GTCTC	2 cut(s)	366, 864
BsmBI	CGTCTC	1 cut(s)	366
BsmFI	GGGAC	2 cut(s)	649, 764
BsmI	GAATGC	2 cut(s)	106, 718
BsnI	GGCC	3 cut(s)	32, 93, 1087
Bsp1286I	GDGCHC	3 cut(s)	39, 475, 1034
Bsp143I	GATC	5 cut(s)	82, 514, 642, 704, 796
BspACI	CCGC	7 cut(s)	54, 57, 60, 66, 815, 1084, 1091
BspANI	GGCC	3 cut(s)	32, 93, 1087
BspCNI	CTCAG	6 cut(s)	63, 186, 436, 631, 766, 844
BspLI	GGNNCC	1 cut(s)	780
BspPI	GGATC	4 cut(s)	90, 509, 712, 804
BsrBI	CCGCTC	2 cut(s)	68, 1084
BsrDI	GCAATG	2 cut(s)	363, 426
BsrI	ACTGG	1 cut(s)	910
BssMI	GATC	5 cut(s)	82, 514, 642, 704, 796
BssNI	GRCGYC	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	657
Bst6I	CTCTTC	4 cut(s)	381, 801, 987, 1011
BstACI	GRCGYC	1 cut(s)	147
BstC8I	GCNNGC	4 cut(s)	748, 1082, 1089, 1100
BstDEI	CTNAG	8 cut(s)	71, 194, 297, 444, 639, 774, 783, 831
BstF5I	GGATG	3 cut(s)	573, 931, 1003
BstKTI	GATC	5 cut(s)	85, 517, 645, 707, 799
BstMAI	GTCTC	2 cut(s)	366, 864
BstMBI	GATC	5 cut(s)	82, 514, 642, 704, 796
BstMWI	GCNNNNNNNGC	5 cut(s)	62, 65, 74, 260, 1081
BstNI	CCWGG	1 cut(s)	657
BstPAI	GACNNNNGTC	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	655
BstSLI	GKGCMC	2 cut(s)	475, 1034
BstV1I	GCAGC	4 cut(s)	18, 74, 238, 340
BstV2I	GAAGAC	2 cut(s)	431, 993
BstX2I	RGATCY	1 cut(s)	796
BstYI	RGATCY	1 cut(s)	796
Bsu36I	CCTNAGG	2 cut(s)	774, 783
BsuI	GTATCC	1 cut(s)	663
BsuRI	GGCC	3 cut(s)	32, 93, 1087
BtsCI	GGATG	3 cut(s)	573, 931, 1003
BtsIMutI	CAGTG	1 cut(s)	903
Cac8I	GCNNGC	4 cut(s)	748, 1082, 1089, 1100
CaiI	CAGNNNCTG	1 cut(s)	193
Cfr13I	GGNCC	2 cut(s)	361, 778
Csp6I	GTAC	1 cut(s)	437
CviAII	CATG	6 cut(s)	127, 215, 595, 887, 897, 920
CviQI	GTAC	1 cut(s)	437
DdeI	CTNAG	8 cut(s)	71, 194, 297, 444, 639, 774, 783, 831
DpnI	GATC	5 cut(s)	84, 516, 644, 706, 798
DpnII	GATC	5 cut(s)	82, 514, 642, 704, 796
EaeI	YGGCCR	1 cut(s)	30
Eam1104I	CTCTTC	4 cut(s)	381, 801, 987, 1011
EarI	CTCTTC	4 cut(s)	381, 801, 987, 1011
Ecl136II	GAGCTC	1 cut(s)	37
Eco24I	GRGCYC	1 cut(s)	39
Eco32I	GATATC	1 cut(s)	493
Eco47I	GGWCC	2 cut(s)	361, 778
Eco53kI	GAGCTC	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	756
Eco81I	CCTNAGG	2 cut(s)	774, 783
EcoICRI	GAGCTC	1 cut(s)	37
EcoO109I	RGGNCCY	1 cut(s)	778
EcoRII	CCWGG	1 cut(s)	655
EcoRV	GATATC	1 cut(s)	493
EcoT38I	GRGCYC	1 cut(s)	39
Esp3I	CGTCTC	1 cut(s)	366
FaeI	CATG	6 cut(s)	130, 218, 598, 890, 900, 923
FaqI	GGGAC	2 cut(s)	649, 764
FatI	CATG	6 cut(s)	126, 214, 594, 886, 896, 919
FauI	CCCGC	1 cut(s)	61
FblI	GTMKAC	1 cut(s)	600
Fnu4HI	GCNGC	9 cut(s)	7, 57, 60, 63, 66, 252, 354, 1085, 1103
FokI	GGATG	3 cut(s)	560, 938, 1010
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	9 cut(s)	7, 57, 60, 63, 66, 252, 354, 1085, 1103
FspBI	CTAG	1 cut(s)	504
GluI	GCNGC	9 cut(s)	7, 57, 60, 63, 66, 252, 354, 1085, 1103
GsuI	CTGGAG	2 cut(s)	554, 927
HaeIII	GGCC	3 cut(s)	32, 93, 1087
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	6 cut(s)	130, 218, 598, 890, 900, 923
HincII	GTYRAC	1 cut(s)	601
HindII	GTYRAC	1 cut(s)	601
HindIII	AAGCTT	3 cut(s)	275, 677, 748
HinfI	GANTC	5 cut(s)	41, 118, 525, 809, 938
HphI	GGTGA	1 cut(s)	156
Hpy166II	GTNNAC	3 cut(s)	601, 903, 1003
Hpy188I	TCNGA	6 cut(s)	72, 123, 195, 445, 834, 943
Hpy188III	TCNNGA	6 cut(s)	86, 175, 577, 773, 800, 869
Hpy8I	GTNNAC	3 cut(s)	601, 903, 1003
Hpy99I	CGWCG	3 cut(s)	149, 605, 956
HpyAV	CCTTC	5 cut(s)	329, 362, 461, 619, 1061
HpyCH4IV	ACGT	2 cut(s)	147, 435
HpyCH4V	TGCA	9 cut(s)	77, 254, 356, 419, 746, 890, 1057, 1064, 1098
HpyF10VI	GCNNNNNNNGC	5 cut(s)	62, 65, 74, 260, 1081
HpyF3I	CTNAG	8 cut(s)	71, 194, 297, 444, 639, 774, 783, 831
HpySE526I	ACGT	2 cut(s)	147, 435
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	6 cut(s)	130, 218, 598, 890, 900, 923
Kzo9I	GATC	5 cut(s)	82, 514, 642, 704, 796
Lsp1109I	GCAGC	4 cut(s)	18, 74, 238, 340
LweI	GCATC	1 cut(s)	490
MaeI	CTAG	1 cut(s)	504
MaeII	ACGT	2 cut(s)	147, 435
MaeIII	GTNAC	2 cut(s)	162, 724
MalI	GATC	5 cut(s)	84, 516, 644, 706, 798
MbiI	CCGCTC	2 cut(s)	68, 1084
MboI	GATC	5 cut(s)	82, 514, 642, 704, 796
MflI	RGATCY	1 cut(s)	796
MhlI	GDGCHC	3 cut(s)	39, 475, 1034
MluCI	AATT	4 cut(s)	233, 330, 568, 864
MlyI	GAGTC	2 cut(s)	35, 818
MseI	TTAA	2 cut(s)	315, 756
MslI	CAYNNNNRTG	1 cut(s)	924
MspR9I	CCNGG	1 cut(s)	657
Mva1269I	GAATGC	2 cut(s)	106, 718
MvaI	CCWGG	1 cut(s)	657
MwoI	GCNNNNNNNGC	5 cut(s)	62, 65, 74, 260, 1081
NdeII	GATC	5 cut(s)	82, 514, 642, 704, 796
NlaIII	CATG	6 cut(s)	130, 218, 598, 890, 900, 923
NlaIV	GGNNCC	1 cut(s)	780
NmeAIII	GCCGAG	1 cut(s)	58
NmuCI	GTSAC	2 cut(s)	162, 724
PcsI	WCGNNNNNNNCGW	4 cut(s)	381, 606, 713, 957
PctI	GAATGC	2 cut(s)	106, 718
PfeI	GAWTC	3 cut(s)	118, 525, 938
PkrI	GCNGC	9 cut(s)	8, 58, 61, 64, 67, 253, 355, 1086, 1104
PleI	GAGTC	2 cut(s)	35, 817
PpsI	GAGTC	2 cut(s)	35, 817
PpuMI	RGGWCCY	1 cut(s)	778
PshAI	GACNNNNGTC	1 cut(s)	146
Psp124BI	GAGCTC	1 cut(s)	39
Psp5II	RGGWCCY	1 cut(s)	778
Psp6I	CCWGG	1 cut(s)	655
PspGI	CCWGG	1 cut(s)	655
PspN4I	GGNNCC	1 cut(s)	780
PspPI	GGNCC	2 cut(s)	361, 778
PspPPI	RGGWCCY	1 cut(s)	778
PstNI	CAGNNNCTG	1 cut(s)	193
PsuI	RGATCY	1 cut(s)	796
RsaI	GTAC	1 cut(s)	438
RsaNI	GTAC	1 cut(s)	437
RseI	CAYNNNNRTG	1 cut(s)	924
SacI	GAGCTC	1 cut(s)	39
SalI	GTCGAC	1 cut(s)	599
SaqAI	TTAA	2 cut(s)	315, 756
SatI	GCNGC	9 cut(s)	7, 57, 60, 63, 66, 252, 354, 1085, 1103
Sau3AI	GATC	5 cut(s)	82, 514, 642, 704, 796
Sau96I	GGNCC	2 cut(s)	361, 778
SchI	GAGTC	2 cut(s)	35, 818
ScrFI	CCNGG	1 cut(s)	657
SduI	GDGCHC	3 cut(s)	39, 475, 1034
SfaNI	GCATC	1 cut(s)	490
SinI	GGWCC	2 cut(s)	361, 778
SmiMI	CAYNNNNRTG	1 cut(s)	924
SmlI	CTYRAG	2 cut(s)	107, 476
SmoI	CTYRAG	2 cut(s)	107, 476
Sse9I	AATT	4 cut(s)	233, 330, 568, 864
SsiI	CCGC	7 cut(s)	54, 57, 60, 66, 815, 1084, 1091
SspMI	CTAG	1 cut(s)	504
SstI	GAGCTC	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	655
TaiI	ACGT	2 cut(s)	150, 438
TaqI	TCGA	6 cut(s)	39, 384, 600, 645, 707, 868
TaqII	GACCGA	1 cut(s)	158
TasI	AATT	4 cut(s)	233, 330, 568, 864
TauI	GCSGC	4 cut(s)	59, 62, 68, 1087
TfiI	GAWTC	3 cut(s)	118, 525, 938
Tru1I	TTAA	2 cut(s)	315, 756
Tru9I	TTAA	2 cut(s)	315, 756
TscAI	CASTG	1 cut(s)	910
TseFI	GTSAC	2 cut(s)	162, 724
TseI	GCWGC	5 cut(s)	6, 62, 251, 353, 1102
Tsp45I	GTSAC	2 cut(s)	162, 724
TspDTI	ATGAA	7 cut(s)	297, 363, 437, 480, 819, 908, 999
TspRI	CASTG	1 cut(s)	910
VpaK11BI	GGWCC	2 cut(s)	361, 778
XapI	RAATTY	2 cut(s)	233, 568
XmiI	GTMKAC	1 cut(s)	600
XspI	CTAG	1 cut(s)	504
ZraI	GACGTC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.