pycom09g10850

Belongs to the nucleosome assembly protein (NAP) family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
8908595 .. 8911452
2858 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g10850.8

Sequence Viewer

Length: 1113 bp
ATGAGCAGCAACGAGGATAACTTTGACATGGCCGAGCTCGACTCCTCCCTCCCCGCCGCCGGCGGCTCTCCGAGTGCAGAGGATCGTGATGGCCTTGTGAATGCTCTCAAGGATAAGATTCAGAGCATGGCTGGACAGCAGACCGACGTCTTGGAAACTTTGTCACCCATCGTCAGGAAGCGTGTTCAGGTTCTGAGGGAGATACAGAGCCAACATGATGAGATTGAAACAAATTTTTTTGAGGAGAAAGCTGCATTGGAAGCAAAATACCAGAAGCTTTATGGACCTCTCTACACTAAGAGATATGAGATTGTTAATGGTATAACTGAAGTTGAAGGAGTGACAAATGAAGCTGCAATGGACCAAGAAGGAGACGAGGACGTCGAAGACAAAGGAGTGCCTGACTTTTGGCTTACTGCAATGAAGACTAATGACGTACTTTCTGAGGAGATTACCGAGCGCGATGAAGGGGCACTCAAGTATCTCAAAGATATCAAGTGGTCTAGGATGGATGATCCAAAAGGATTCAAGCTGGAGTTCTTCTTTGATACTAATCCATATTTCAAAAATTCCATCCTGACAAAAACATATCACATGGTCGACGAGAACGAACCTATTTTGGAGAAGGCTATTGGGACTGAGATCGAATGGTATCCTGGTAAAAGCTTGACACAGAAGCTTTTGAAGAAGAAGCCAAGAAAGGGATCGAAGAATGCGAAACCCGTGACCAAAACTGAAGATTGTCCAAGCTTCTTTAACTTCTTTAGCCCTCCTGAGGTCCCTAAGGAGGACGAGGATCTTGATGAAGAGTCTGCGGAAGAACTCCAAGCTCAGATGGAACAGGATTATGACATTGGTTCAACAATTCGAGACAAAATCATTCCTCATGCAACATCATGGTTCACTGGAGAGGCTGTTCATGGGGATGGGTTTGACGATTCAGATGATGATGACGAAGACGATGAGTTATACGATGATGATGATGATGAAGACGAAGAGGATGAGGATGATGACGAGGAAGAGGAGGATAAGGGCACGAAAAAGAAAAGGGGTAATGTGCAAGGTGCAGAAGGTCAGCAAGGCGAGCGCCCTGTGGAGTGCAAGCAGCAATAG

Protein Analysis

371

Amino Acids

42.13

Weight (kDa)

4.25

Isoelectric Point (pI)

46.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000381)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 380
AatII GACGTC 2 cut(s) 150, 384
AccI GTMKAC 1 cut(s) 600
AccII CGCG 1 cut(s) 462
AciI CCGC 4 cut(s) 54, 57, 63, 815
AclWI GGATC 4 cut(s) 90, 509, 712, 804
AcoI YGGCCR 1 cut(s) 30
AcsI RAATTY 2 cut(s) 232, 568
AcuI CTGAAG 2 cut(s) 348, 756
AcyI GRCGYC 2 cut(s) 147, 381
AfaI GTAC 1 cut(s) 438
AfiI CCNNNNNNNGG 5 cut(s) 59, 174, 701, 775, 787
AgsI TTSAA 6 cut(s) 227, 335, 529, 565, 685, 861
AjnI CCWGG 1 cut(s) 655
AjuI GAANNNNNNNTTGG 2 cut(s) 239, 271
AloI GAACNNNNNNTCC 2 cut(s) 900, 932
AluBI AGCT 9 cut(s) 37, 251, 277, 353, 532, 666, 679, 750, 830
AluI AGCT 9 cut(s) 37, 251, 277, 353, 532, 666, 679, 750, 830
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 2 cut(s) 366, 864
AlwI GGATC 4 cut(s) 90, 509, 712, 804
AlwNI CAGNNNCTG 1 cut(s) 193
AoxI GGCC 2 cut(s) 30, 91
ApeKI GCWGC 4 cut(s) 6, 251, 353, 1105
ApoI RAATTY 2 cut(s) 232, 568
AspLEI GCGC 2 cut(s) 462, 1089
AspS9I GGNCC 3 cut(s) 284, 361, 778
AsuHPI GGTGA 1 cut(s) 156
AvaII GGWCC 3 cut(s) 284, 361, 778
AxyI CCTNAGG 2 cut(s) 774, 783
BaeGI GKGCMC 2 cut(s) 475, 1037
BaeI ACNNNNGTAYC 2 cut(s) 464, 497
BanII GRGCYC 1 cut(s) 39
BbsI GAAGAC 4 cut(s) 393, 431, 963, 996
Bbv12I GWGCWC 1 cut(s) 39
BbvI GCAGC 3 cut(s) 18, 238, 340
BccI CCATC 6 cut(s) 83, 176, 502, 581, 829, 920
BciT130I CCWGG 1 cut(s) 657
BciVI GTATCC 1 cut(s) 663
BcoDI GTCTC 2 cut(s) 366, 864
BfaI CTAG 1 cut(s) 504
BfoI RGCGCY 1 cut(s) 1090
BfuI GTATCC 1 cut(s) 663
BisI GCNGC 6 cut(s) 7, 57, 64, 252, 354, 1106
BlsI GCNGC 6 cut(s) 8, 58, 65, 253, 355, 1107
Bme1390I CCNGG 1 cut(s) 657
Bme18I GGWCC 3 cut(s) 284, 361, 778
BmgT120I GGNCC 3 cut(s) 284, 361, 778
BmiI GGNNCC 1 cut(s) 780
BmrFI CCNGG 1 cut(s) 657
BoxI GACNNNNGTC 1 cut(s) 146
BpiI GAAGAC 4 cut(s) 393, 431, 963, 996
BplI GAGNNNNNCTC 2 cut(s) 26, 58
BpmI CTGGAG 2 cut(s) 554, 927
BpuEI CTTGAG 2 cut(s) 92, 461
BsaBI GATNNNNATC 1 cut(s) 552
BsaHI GRCGYC 2 cut(s) 147, 381
BsaXI ACNNNNNCTCC 2 cut(s) 900, 930
Bsc4I CCNNNNNNNGG 5 cut(s) 59, 174, 701, 775, 787
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 910
Bse21I CCTNAGG 2 cut(s) 774, 783
Bse3DI GCAATG 2 cut(s) 363, 426
Bse8I GATNNNNATC 1 cut(s) 552
BseBI CCWGG 1 cut(s) 657
BseGI GGATG 6 cut(s) 513, 517, 573, 931, 1006, 1012
BseJI GATNNNNATC 1 cut(s) 552
BseLI CCNNNNNNNGG 5 cut(s) 59, 174, 701, 775, 787
BseMI GCAATG 2 cut(s) 363, 426
BseMII CTCAG 5 cut(s) 185, 435, 630, 765, 845
BseNI ACTGG 1 cut(s) 910
BseRI GAGGAG 4 cut(s) 34, 257, 461, 1037
BseSI GKGCMC 2 cut(s) 475, 1037
BseXI GCAGC 3 cut(s) 18, 238, 340
BsgI GTGCAG 2 cut(s) 96, 1086
Bsh1236I CGCG 1 cut(s) 462
BshFI GGCC 2 cut(s) 32, 93
BsiHKAI GWGCWC 1 cut(s) 39
BsiSI CCGG 1 cut(s) 60
BslFI GGGAC 2 cut(s) 649, 764
BslI CCNNNNNNNGG 5 cut(s) 59, 174, 701, 775, 787
BsmAI GTCTC 2 cut(s) 366, 864
BsmBI CGTCTC 1 cut(s) 366
BsmFI GGGAC 2 cut(s) 649, 764
BsmI GAATGC 2 cut(s) 106, 718
BsnI GGCC 2 cut(s) 32, 93
Bsp1286I GDGCHC 3 cut(s) 39, 475, 1037
Bsp143I GATC 5 cut(s) 82, 514, 642, 704, 796
BspACI CCGC 4 cut(s) 54, 57, 63, 815
BspANI GGCC 2 cut(s) 32, 93
BspCNI CTCAG 5 cut(s) 186, 436, 631, 766, 844
BspFNI CGCG 1 cut(s) 462
BspLI GGNNCC 1 cut(s) 780
BspPI GGATC 4 cut(s) 90, 509, 712, 804
BsrDI GCAATG 2 cut(s) 363, 426
BsrFI RCCGGY 1 cut(s) 59
BsrI ACTGG 1 cut(s) 910
BssAI RCCGGY 1 cut(s) 59
BssMI GATC 5 cut(s) 82, 514, 642, 704, 796
BssNI GRCGYC 2 cut(s) 147, 381
Bst2UI CCWGG 1 cut(s) 657
Bst6I CTCTTC 3 cut(s) 801, 990, 1014
BstACI GRCGYC 2 cut(s) 147, 381
BstC8I GCNNGC 3 cut(s) 61, 1085, 1103
BstDEI CTNAG 7 cut(s) 194, 297, 444, 639, 774, 783, 831
BstF5I GGATG 6 cut(s) 513, 517, 573, 931, 1006, 1012
BstFNI CGCG 1 cut(s) 462
BstH2I RGCGCY 1 cut(s) 1090
BstHHI GCGC 2 cut(s) 462, 1089
BstKTI GATC 5 cut(s) 85, 517, 645, 707, 799
BstMAI GTCTC 2 cut(s) 366, 864
BstMBI GATC 5 cut(s) 82, 514, 642, 704, 796
BstMWI GCNNNNNNNGC 2 cut(s) 260, 1084
BstNI CCWGG 1 cut(s) 657
BstPAI GACNNNNGTC 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 655
BstSLI GKGCMC 2 cut(s) 475, 1037
BstUI CGCG 1 cut(s) 462
BstV1I GCAGC 3 cut(s) 18, 238, 340
BstV2I GAAGAC 4 cut(s) 393, 431, 963, 996
BstX2I RGATCY 1 cut(s) 796
BstYI RGATCY 1 cut(s) 796
Bsu36I CCTNAGG 2 cut(s) 774, 783
BsuI GTATCC 1 cut(s) 663
BsuRI GGCC 2 cut(s) 32, 93
BtgZI GCGATG 1 cut(s) 477
BtsCI GGATG 6 cut(s) 513, 517, 573, 931, 1006, 1012
BtsIMutI CAGTG 1 cut(s) 903
Cac8I GCNNGC 3 cut(s) 61, 1085, 1103
CaiI CAGNNNCTG 1 cut(s) 193
CfoI GCGC 2 cut(s) 462, 1089
Cfr10I RCCGGY 1 cut(s) 59
Cfr13I GGNCC 3 cut(s) 284, 361, 778
Csp6I GTAC 1 cut(s) 437
CviAII CATG 7 cut(s) 28, 127, 215, 595, 887, 897, 920
CviQI GTAC 1 cut(s) 437
DdeI CTNAG 7 cut(s) 194, 297, 444, 639, 774, 783, 831
DpnI GATC 5 cut(s) 84, 516, 644, 706, 798
DpnII GATC 5 cut(s) 82, 514, 642, 704, 796
DrdI GACNNNNNNGTC 1 cut(s) 380
DseDI GACNNNNNNGTC 1 cut(s) 380
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 3 cut(s) 801, 990, 1014
EarI CTCTTC 3 cut(s) 801, 990, 1014
Ecl136II GAGCTC 1 cut(s) 37
Eco24I GRGCYC 1 cut(s) 39
Eco32I GATATC 1 cut(s) 493
Eco47I GGWCC 3 cut(s) 284, 361, 778
Eco53kI GAGCTC 1 cut(s) 37
Eco57I CTGAAG 2 cut(s) 348, 756
Eco81I CCTNAGG 2 cut(s) 774, 783
EcoICRI GAGCTC 1 cut(s) 37
EcoO109I RGGNCCY 1 cut(s) 778
EcoRII CCWGG 1 cut(s) 655
EcoRV GATATC 1 cut(s) 493
EcoT38I GRGCYC 1 cut(s) 39
Esp3I CGTCTC 1 cut(s) 366
FaeI CATG 7 cut(s) 31, 130, 218, 598, 890, 900, 923
FaqI GGGAC 2 cut(s) 649, 764
FatI CATG 7 cut(s) 27, 126, 214, 594, 886, 896, 919
FauI CCCGC 1 cut(s) 61
FblI GTMKAC 1 cut(s) 600
Fnu4HI GCNGC 6 cut(s) 7, 57, 64, 252, 354, 1106
FokI GGATG 6 cut(s) 520, 524, 560, 938, 1013, 1019
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 6 cut(s) 7, 57, 64, 252, 354, 1106
FspBI CTAG 1 cut(s) 504
GlaI GCGC 2 cut(s) 461, 1088
GluI GCNGC 6 cut(s) 7, 57, 64, 252, 354, 1106
GsuI CTGGAG 2 cut(s) 554, 927
HaeII RGCGCY 1 cut(s) 1090
HaeIII GGCC 2 cut(s) 32, 93
HapII CCGG 1 cut(s) 60
HhaI GCGC 2 cut(s) 462, 1089
Hin1I GRCGYC 2 cut(s) 147, 381
Hin1II CATG 7 cut(s) 31, 130, 218, 598, 890, 900, 923
Hin6I GCGC 2 cut(s) 460, 1087
HinP1I GCGC 2 cut(s) 460, 1087
HincII GTYRAC 1 cut(s) 601
HindII GTYRAC 1 cut(s) 601
HindIII AAGCTT 4 cut(s) 275, 664, 677, 748
HinfI GANTC 5 cut(s) 41, 118, 525, 809, 938
HpaII CCGG 1 cut(s) 60
HphI GGTGA 1 cut(s) 156
Hpy166II GTNNAC 2 cut(s) 601, 903
Hpy188I TCNGA 6 cut(s) 72, 123, 195, 445, 834, 943
Hpy188III TCNNGA 6 cut(s) 86, 175, 577, 773, 800, 869
Hpy8I GTNNAC 2 cut(s) 601, 903
Hpy99I CGWCG 3 cut(s) 149, 386, 605
HpyAV CCTTC 5 cut(s) 329, 362, 461, 619, 1064
HpyCH4IV ACGT 3 cut(s) 147, 381, 435
HpyCH4V TGCA 8 cut(s) 77, 254, 356, 419, 890, 1060, 1067, 1101
HpyF10VI GCNNNNNNNGC 2 cut(s) 260, 1084
HpyF3I CTNAG 7 cut(s) 194, 297, 444, 639, 774, 783, 831
HpySE526I ACGT 3 cut(s) 147, 381, 435
Hsp92I GRCGYC 2 cut(s) 147, 381
Hsp92II CATG 7 cut(s) 31, 130, 218, 598, 890, 900, 923
HspAI GCGC 2 cut(s) 460, 1087
KroI GCCGGC 1 cut(s) 59
KroNI GCCGGC 1 cut(s) 61
Kzo9I GATC 5 cut(s) 82, 514, 642, 704, 796
Lsp1109I GCAGC 3 cut(s) 18, 238, 340
MaeI CTAG 1 cut(s) 504
MaeII ACGT 3 cut(s) 147, 381, 435
MaeIII GTNAC 3 cut(s) 162, 340, 724
MalI GATC 5 cut(s) 84, 516, 644, 706, 798
MboI GATC 5 cut(s) 82, 514, 642, 704, 796
MflI RGATCY 1 cut(s) 796
MhlI GDGCHC 3 cut(s) 39, 475, 1037
MluCI AATT 3 cut(s) 232, 568, 864
MlyI GAGTC 2 cut(s) 35, 818
MreI CGCCGGCG 1 cut(s) 59
MroNI GCCGGC 1 cut(s) 59
MseI TTAA 2 cut(s) 315, 756
MslI CAYNNNNRTG 1 cut(s) 924
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 1 cut(s) 657
Mva1269I GAATGC 2 cut(s) 106, 718
MvaI CCWGG 1 cut(s) 657
MvnI CGCG 1 cut(s) 462
MwoI GCNNNNNNNGC 2 cut(s) 260, 1084
NaeI GCCGGC 1 cut(s) 61
NdeII GATC 5 cut(s) 82, 514, 642, 704, 796
NgoMIV GCCGGC 1 cut(s) 59
NlaIII CATG 7 cut(s) 31, 130, 218, 598, 890, 900, 923
NlaIV GGNNCC 1 cut(s) 780
NmeAIII GCCGAG 1 cut(s) 58
NmuCI GTSAC 3 cut(s) 162, 340, 724
PcsI WCGNNNNNNNCGW 3 cut(s) 381, 606, 713
PctI GAATGC 2 cut(s) 106, 718
PdiI GCCGGC 1 cut(s) 61
PfeI GAWTC 3 cut(s) 118, 525, 938
PkrI GCNGC 6 cut(s) 8, 58, 65, 253, 355, 1107
PleI GAGTC 2 cut(s) 35, 817
PpsI GAGTC 2 cut(s) 35, 817
PpuMI RGGWCCY 1 cut(s) 778
PshAI GACNNNNGTC 1 cut(s) 146
Psp124BI GAGCTC 1 cut(s) 39
Psp5II RGGWCCY 1 cut(s) 778
Psp6I CCWGG 1 cut(s) 655
PspGI CCWGG 1 cut(s) 655
PspN4I GGNNCC 1 cut(s) 780
PspPI GGNCC 3 cut(s) 284, 361, 778
PspPPI RGGWCCY 1 cut(s) 778
PstNI CAGNNNCTG 1 cut(s) 193
PsuI RGATCY 1 cut(s) 796
RsaI GTAC 1 cut(s) 438
RsaNI GTAC 1 cut(s) 437
RseI CAYNNNNRTG 1 cut(s) 924
SacI GAGCTC 1 cut(s) 39
SalI GTCGAC 1 cut(s) 599
SaqAI TTAA 2 cut(s) 315, 756
SatI GCNGC 6 cut(s) 7, 57, 64, 252, 354, 1106
Sau3AI GATC 5 cut(s) 82, 514, 642, 704, 796
Sau96I GGNCC 3 cut(s) 284, 361, 778
SchI GAGTC 2 cut(s) 35, 818
ScrFI CCNGG 1 cut(s) 657
SduI GDGCHC 3 cut(s) 39, 475, 1037
SgrAI CRCCGGYG 1 cut(s) 59
SinI GGWCC 3 cut(s) 284, 361, 778
SmiMI CAYNNNNRTG 1 cut(s) 924
SmlI CTYRAG 2 cut(s) 107, 476
SmoI CTYRAG 2 cut(s) 107, 476
Sse9I AATT 3 cut(s) 232, 568, 864
SsiI CCGC 4 cut(s) 54, 57, 63, 815
SspMI CTAG 1 cut(s) 504
SstI GAGCTC 1 cut(s) 39
StyD4I CCNGG 1 cut(s) 655
TaiI ACGT 3 cut(s) 150, 384, 438
TaqI TCGA 6 cut(s) 39, 384, 600, 645, 707, 868
TaqII GACCGA 1 cut(s) 158
TasI AATT 3 cut(s) 232, 568, 864
TauI GCSGC 2 cut(s) 59, 66
TfiI GAWTC 3 cut(s) 118, 525, 938
Tru1I TTAA 2 cut(s) 315, 756
Tru9I TTAA 2 cut(s) 315, 756
TscAI CASTG 1 cut(s) 910
TseFI GTSAC 3 cut(s) 162, 340, 724
TseI GCWGC 4 cut(s) 6, 251, 353, 1105
Tsp45I GTSAC 3 cut(s) 162, 340, 724
TspDTI ATGAA 6 cut(s) 363, 437, 480, 819, 908, 1002
TspRI CASTG 1 cut(s) 910
VpaK11BI GGWCC 3 cut(s) 284, 361, 778
XapI RAATTY 2 cut(s) 232, 568
XcmI CCANNNNNNNNNTGG 1 cut(s) 278
XmiI GTMKAC 1 cut(s) 600
XspI CTAG 1 cut(s) 504
ZraI GACGTC 2 cut(s) 148, 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.