Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Forward (+)

3399546 .. 3403330

Gene Structure 3785 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G048200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGAGCAGCAACAAAGATACCTTCGACATGTCCGACCTCGGCTCCTCCCTCCCCGCCGCTGCCGCCGCTCTTAGTGCAGAGGATCGTGCTGGTCTTGTTAATGCTCTTAAGAATAAGCTTCAGAGCTTGGCTGGACAGCATACTGACATATTGGAAACTTTGCCACCTTCGGTCAGGAAGCGTGTTGAGGTTTTGAGAGAGATACAGGGCCAACATGATGAGCTGGAAGAGAAATATTTTGAGGAGAAAGCTGCATTGGAAGCAAAATACCAGAAGCTTTATGAACCTCTCTACACAAAGAGATATGACATTGTTAATGGTGTAACTGAAGTCGAAGGAGTGAAAAATGAAGATGCACCAGACCAAGAAGGAGATAAGGCCACTGAAGAGAAAGGAGTGCCTGACTTTTGGCTCACCGCAATGAAGACTAATGAAGTACTTTCTGAGGAGATTACAGAGCGTGATGAAGGTGCACTCAAGTATCTCAAGGATATCAAGTGGTGTAGGATAGACAAGCCAAAAGGATTCAAGCTGGAGTTCTTCTTTGATCCTAATCCGTATTTCAAAAATTCTGTCCTGTCAAAAATATATCACATGATTGATGAGGACAATGAGCCTATTTTAGAAAAGGCGATTGGGACTGAGATTGAATGGTATCCGGGGAAAAGCTTGACACAGAAGCTTCTCAAGAAGAAGCCAAGAAAGGGATCAAAGAATGCGAAGCCCATGACCAAAACTGAAGATTGTCCAAGCTTCTTCAACTTCTTTAGCCCTCCTCAGGTCCCTGATGACGATGATGATATCGATGATGATACTGCTGAAGAACTCCAAAGCCAGATGGAGCAGGATTATGATATTGGTTCAACAATTCGAGACAAAATCATTCCTCACGCAGTATCATGGTTCACTGGAGAGGCTGTTCAAGGGGATGAGTTTGAAGATTTAGAAGATGACGATGATGATGACGTTGATGAGAATGATGATGATGATGATGAGGAAGAAGAGGAAGATGGTGAGGACGATGATGACGATGACGATGATGATGAGGAAGAGGAAGATAAGGGCAGGAAAAAGCCATCTGCTGGATCTAAGAAAAGTGGTAGGGCACAAGGTGCGGAAGGTCAGCAAGGGGAGCGCCCTCCCGAGTGCAAGCAACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

387

Amino Acids

43.81

Weight (kDa)

4.28

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1082
AccBSI	CCGCTC	1 cut(s)	68
AciI	CCGC	6 cut(s)	54, 57, 63, 66, 417, 1115
AclWI	GGATC	4 cut(s)	90, 542, 715, 1093
AcsI	RAATTY	1 cut(s)	568
AcuI	CTGAAG	5 cut(s)	104, 348, 405, 759, 840
AdeI	CACNNNGTG	1 cut(s)	1112
AfaI	GTAC	1 cut(s)	438
AfiI	CCNNNNNNNGG	3 cut(s)	704, 778, 1082
AflII	CTTAAG	1 cut(s)	107
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	7 cut(s)	529, 565, 650, 760, 864, 923, 938
AjuI	GAANNNNNNNTTGG	4 cut(s)	239, 271, 618, 650
AloI	GAACNNNNNNTCC	2 cut(s)	903, 935
AluBI	AGCT	9 cut(s)	118, 126, 223, 251, 277, 532, 669, 682, 753
AluI	AGCT	9 cut(s)	118, 126, 223, 251, 277, 532, 669, 682, 753
Alw21I	GWGCWC	1 cut(s)	475
Alw26I	GTCTC	1 cut(s)	867
Alw44I	GTGCAC	1 cut(s)	471
AlwI	GGATC	4 cut(s)	90, 542, 715, 1093
Ama87I	CYCGRG	1 cut(s)	1142
AoxI	GGCC	2 cut(s)	208, 378
ApaLI	GTGCAC	1 cut(s)	471
ApeKI	GCWGC	3 cut(s)	6, 59, 251
ApoI	RAATTY	1 cut(s)	568
ArsI	GACNNNNNNTTYG	2 cut(s)	558, 590
AspLEI	GCGC	1 cut(s)	1137
AspS9I	GGNCC	2 cut(s)	208, 781
AsuC2I	CCSGG	1 cut(s)	660
AsuHPI	GGTGA	2 cut(s)	406, 1025
AvaI	CYCGRG	1 cut(s)	1142
AvaII	GGWCC	1 cut(s)	781
AxyI	CCTNAGG	1 cut(s)	777
BaeGI	GKGCMC	2 cut(s)	475, 1108
BaeI	ACNNNNGTAYC	2 cut(s)	464, 497
BbsI	GAAGAC	1 cut(s)	431
Bbv12I	GWGCWC	1 cut(s)	475
BbvI	GCAGC	3 cut(s)	18, 46, 238
BccI	CCATC	3 cut(s)	832, 1004, 1084
BciVI	GTATCC	1 cut(s)	666
BcnI	CCSGG	1 cut(s)	660
BcoDI	GTCTC	1 cut(s)	867
BfoI	RGCGCY	1 cut(s)	1138
BfrI	CTTAAG	1 cut(s)	107
BfuI	GTATCC	1 cut(s)	666
BisI	GCNGC	6 cut(s)	7, 57, 60, 63, 66, 252
BlsI	GCNGC	6 cut(s)	8, 58, 61, 64, 67, 253
BmcAI	AGTACT	1 cut(s)	438
Bme1390I	CCNGG	1 cut(s)	660
Bme18I	GGWCC	1 cut(s)	781
BmeT110I	CYCGRG	1 cut(s)	1142
BmgT120I	GGNCC	2 cut(s)	208, 781
BmiI	GGNNCC	2 cut(s)	43, 783
BmrFI	CCNGG	1 cut(s)	660
BmsI	GCATC	1 cut(s)	343
BpiI	GAAGAC	1 cut(s)	431
BpmI	CTGGAG	2 cut(s)	554, 930
BpuEI	CTTGAG	3 cut(s)	461, 470, 671
BpuMI	CCSGG	1 cut(s)	660
Bsa29I	ATCGAT	1 cut(s)	804
BsaBI	GATNNNNATC	1 cut(s)	552
BsaJI	CCNNGG	2 cut(s)	37, 659
BsaXI	ACNNNNNCTCC	4 cut(s)	26, 56, 903, 933
Bsc4I	CCNNNNNNNGG	3 cut(s)	704, 778, 1082
Bse1I	ACTGG	1 cut(s)	913
Bse21I	CCTNAGG	1 cut(s)	777
Bse3DI	GCAATG	1 cut(s)	426
Bse8I	GATNNNNATC	1 cut(s)	552
BseCI	ATCGAT	1 cut(s)	804
BseDI	CCNNGG	2 cut(s)	37, 659
BseGI	GGATG	1 cut(s)	934
BseJI	GATNNNNATC	1 cut(s)	552
BseLI	CCNNNNNNNGG	3 cut(s)	704, 778, 1082
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	3 cut(s)	435, 633, 791
BseNI	ACTGG	1 cut(s)	913
BseRI	GAGGAG	4 cut(s)	34, 257, 461, 765
BseSI	GKGCMC	2 cut(s)	475, 1108
BseXI	GCAGC	3 cut(s)	18, 46, 238
BsgI	GTGCAG	1 cut(s)	96
BshFI	GGCC	2 cut(s)	210, 380
BshVI	ATCGAT	1 cut(s)	804
BsiHKAI	GWGCWC	1 cut(s)	475
BsiHKCI	CYCGRG	1 cut(s)	1142
BsiSI	CCGG	1 cut(s)	659
BslFI	GGGAC	2 cut(s)	652, 767
BslI	CCNNNNNNNGG	3 cut(s)	704, 778, 1082
BsmAI	GTCTC	1 cut(s)	867
BsmFI	GGGAC	2 cut(s)	652, 767
BsmI	GAATGC	1 cut(s)	721
BsnI	GGCC	2 cut(s)	210, 380
BsoBI	CYCGRG	1 cut(s)	1142
Bsp1286I	GDGCHC	2 cut(s)	475, 1108
Bsp143I	GATC	4 cut(s)	82, 547, 707, 1085
BspACI	CCGC	6 cut(s)	54, 57, 63, 66, 417, 1115
BspANI	GGCC	2 cut(s)	210, 380
BspCNI	CTCAG	3 cut(s)	436, 634, 790
BspDI	ATCGAT	1 cut(s)	804
BspLI	GGNNCC	2 cut(s)	43, 783
BspPI	GGATC	4 cut(s)	90, 542, 715, 1093
BspTI	CTTAAG	1 cut(s)	107
BsrBI	CCGCTC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	426
BsrI	ACTGG	1 cut(s)	913
BssECI	CCNNGG	2 cut(s)	37, 659
BssMI	GATC	4 cut(s)	82, 547, 707, 1085
Bst6I	CTCTTC	4 cut(s)	222, 381, 996, 1044
BstAFI	CTTAAG	1 cut(s)	107
BstAPI	GCANNNNNTGC	1 cut(s)	1112
BstC8I	GCNNGC	1 cut(s)	1151
BstDEI	CTNAG	5 cut(s)	71, 444, 642, 777, 1089
BstF5I	GGATG	1 cut(s)	934
BstH2I	RGCGCY	1 cut(s)	1138
BstHHI	GCGC	1 cut(s)	1137
BstKTI	GATC	4 cut(s)	85, 550, 710, 1088
BstMAI	GTCTC	1 cut(s)	867
BstMBI	GATC	4 cut(s)	82, 547, 707, 1085
BstMWI	GCNNNNNNNGC	6 cut(s)	62, 65, 74, 260, 1112, 1132
BstNSI	RCATGY	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	658
BstSLI	GKGCMC	2 cut(s)	475, 1108
BstV1I	GCAGC	3 cut(s)	18, 46, 238
BstV2I	GAAGAC	1 cut(s)	431
BstX2I	RGATCY	1 cut(s)	1085
BstYI	RGATCY	1 cut(s)	1085
Bsu15I	ATCGAT	1 cut(s)	804
Bsu36I	CCTNAGG	1 cut(s)	777
BsuI	GTATCC	1 cut(s)	666
BsuRI	GGCC	2 cut(s)	210, 380
BsuTUI	ATCGAT	1 cut(s)	804
BtsCI	GGATG	1 cut(s)	934
BtsIMutI	CAGTG	2 cut(s)	381, 906
Cac8I	GCNNGC	1 cut(s)	1151
CfoI	GCGC	1 cut(s)	1137
Cfr13I	GGNCC	2 cut(s)	208, 781
ClaI	ATCGAT	1 cut(s)	804
Csp6I	GTAC	1 cut(s)	437
CviAII	CATG	5 cut(s)	28, 215, 595, 727, 900
CviQI	GTAC	1 cut(s)	437
DdeI	CTNAG	5 cut(s)	71, 444, 642, 777, 1089
DpnI	GATC	4 cut(s)	84, 549, 709, 1087
DpnII	GATC	4 cut(s)	82, 547, 707, 1085
DraIII	CACNNNGTG	1 cut(s)	1112
Eam1104I	CTCTTC	4 cut(s)	222, 381, 996, 1044
EarI	CTCTTC	4 cut(s)	222, 381, 996, 1044
Eco32I	GATATC	2 cut(s)	493, 802
Eco47I	GGWCC	1 cut(s)	781
Eco57I	CTGAAG	5 cut(s)	104, 348, 405, 759, 840
Eco81I	CCTNAGG	1 cut(s)	777
Eco88I	CYCGRG	1 cut(s)	1142
EcoO109I	RGGNCCY	1 cut(s)	781
EcoRV	GATATC	2 cut(s)	493, 802
FaeI	CATG	5 cut(s)	31, 218, 598, 730, 903
FaqI	GGGAC	2 cut(s)	652, 767
FatI	CATG	5 cut(s)	27, 214, 594, 726, 899
FauI	CCCGC	1 cut(s)	61
Fnu4HI	GCNGC	6 cut(s)	7, 57, 60, 63, 66, 252
FokI	GGATG	1 cut(s)	941
Fsp4HI	GCNGC	6 cut(s)	7, 57, 60, 63, 66, 252
GlaI	GCGC	1 cut(s)	1136
GluI	GCNGC	6 cut(s)	7, 57, 60, 63, 66, 252
GsuI	CTGGAG	2 cut(s)	554, 930
HaeII	RGCGCY	1 cut(s)	1138
HaeIII	GGCC	2 cut(s)	210, 380
HapII	CCGG	1 cut(s)	659
HhaI	GCGC	1 cut(s)	1137
Hin1II	CATG	5 cut(s)	31, 218, 598, 730, 903
Hin6I	GCGC	1 cut(s)	1135
HinP1I	GCGC	1 cut(s)	1135
HindIII	AAGCTT	5 cut(s)	116, 275, 667, 680, 751
HinfI	GANTC	1 cut(s)	525
HpaII	CCGG	1 cut(s)	659
HphI	GGTGA	2 cut(s)	406, 1025
Hpy166II	GTNNAC	2 cut(s)	473, 906
Hpy188I	TCNGA	3 cut(s)	34, 123, 445
Hpy188III	TCNNGA	4 cut(s)	175, 688, 872, 1142
Hpy8I	GTNNAC	2 cut(s)	473, 906
HpyAV	CCTTC	6 cut(s)	31, 177, 329, 362, 461, 1112
HpyCH4IV	ACGT	1 cut(s)	966
HpyCH4V	TGCA	5 cut(s)	77, 254, 356, 473, 1149
HpyF10VI	GCNNNNNNNGC	6 cut(s)	62, 65, 74, 260, 1112, 1132
HpyF3I	CTNAG	5 cut(s)	71, 444, 642, 777, 1089
HpySE526I	ACGT	1 cut(s)	966
Hsp92II	CATG	5 cut(s)	31, 218, 598, 730, 903
HspAI	GCGC	1 cut(s)	1135
Kzo9I	GATC	4 cut(s)	82, 547, 707, 1085
LmnI	GCTCC	3 cut(s)	47, 841, 1132
Lsp1109I	GCAGC	3 cut(s)	18, 46, 238
LweI	GCATC	1 cut(s)	343
MaeII	ACGT	1 cut(s)	966
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	4 cut(s)	84, 549, 709, 1087
MbiI	CCGCTC	1 cut(s)	68
MboI	GATC	4 cut(s)	82, 547, 707, 1085
MflI	RGATCY	1 cut(s)	1085
MhlI	GDGCHC	2 cut(s)	475, 1108
MluCI	AATT	2 cut(s)	568, 867
MmeI	TCCRAC	1 cut(s)	57
MseI	TTAA	3 cut(s)	99, 108, 315
MslI	CAYNNNNRTG	1 cut(s)	419
MspA1I	CMGCKG	1 cut(s)	59
MspCI	CTTAAG	1 cut(s)	107
MspI	CCGG	1 cut(s)	659
MspR9I	CCNGG	1 cut(s)	660
Mva1269I	GAATGC	1 cut(s)	721
MwoI	GCNNNNNNNGC	6 cut(s)	62, 65, 74, 260, 1112, 1132
NciI	CCSGG	1 cut(s)	660
NdeII	GATC	4 cut(s)	82, 547, 707, 1085
NlaIII	CATG	5 cut(s)	31, 218, 598, 730, 903
NlaIV	GGNNCC	2 cut(s)	43, 783
NmeAIII	GCCGAG	1 cut(s)	18
NspI	RCATGY	1 cut(s)	31
PciI	ACATGT	1 cut(s)	27
PcsI	WCGNNNNNNNCGW	2 cut(s)	30, 1026
PctI	GAATGC	1 cut(s)	721
PfeI	GAWTC	1 cut(s)	525
PflMI	CCANNNNNTGG	1 cut(s)	1082
PkrI	GCNGC	6 cut(s)	8, 58, 61, 64, 67, 253
PpuMI	RGGWCCY	1 cut(s)	781
PscI	ACATGT	1 cut(s)	27
Psp5II	RGGWCCY	1 cut(s)	781
PspN4I	GGNNCC	2 cut(s)	43, 783
PspPI	GGNCC	2 cut(s)	208, 781
PspPPI	RGGWCCY	1 cut(s)	781
PsuI	RGATCY	1 cut(s)	1085
RsaI	GTAC	1 cut(s)	438
RsaNI	GTAC	1 cut(s)	437
RseI	CAYNNNNRTG	1 cut(s)	419
SaqAI	TTAA	3 cut(s)	99, 108, 315
SatI	GCNGC	6 cut(s)	7, 57, 60, 63, 66, 252
Sau3AI	GATC	4 cut(s)	82, 547, 707, 1085
Sau96I	GGNCC	2 cut(s)	208, 781
ScaI	AGTACT	1 cut(s)	438
ScrFI	CCNGG	1 cut(s)	660
SduI	GDGCHC	2 cut(s)	475, 1108
SfaNI	GCATC	1 cut(s)	343
SinI	GGWCC	1 cut(s)	781
SmiMI	CAYNNNNRTG	1 cut(s)	419
SmlI	CTYRAG	4 cut(s)	107, 476, 485, 686
SmoI	CTYRAG	4 cut(s)	107, 476, 485, 686
Sse9I	AATT	2 cut(s)	568, 867
SsiI	CCGC	6 cut(s)	54, 57, 63, 66, 417, 1115
SspI	AATATT	1 cut(s)	236
StyD4I	CCNGG	1 cut(s)	658
TaiI	ACGT	1 cut(s)	969
TaqI	TCGA	4 cut(s)	24, 333, 804, 871
TaqII	GACCGA	1 cut(s)	160
TasI	AATT	2 cut(s)	568, 867
TatI	WGTACW	1 cut(s)	436
TauI	GCSGC	3 cut(s)	59, 65, 68
TfiI	GAWTC	1 cut(s)	525
Tru1I	TTAA	3 cut(s)	99, 108, 315
Tru9I	TTAA	3 cut(s)	99, 108, 315
TscAI	CASTG	2 cut(s)	388, 913
TseI	GCWGC	3 cut(s)	6, 59, 251
TspDTI	ATGAA	5 cut(s)	297, 363, 437, 447, 480
TspGWI	ACGGA	1 cut(s)	546
TspRI	CASTG	2 cut(s)	388, 913
Van91I	CCANNNNNTGG	1 cut(s)	1082
Vha464I	CTTAAG	1 cut(s)	107
VneI	GTGCAC	1 cut(s)	471
VpaK11BI	GGWCC	1 cut(s)	781
XapI	RAATTY	1 cut(s)	568
XceI	RCATGY	1 cut(s)	31
ZrmI	AGTACT	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.