Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Reverse (-)

53636228 .. 53637718

Gene Structure 1491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG414000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGAGCGCCGACAAGGATAACAACATCAACATGGCCGATCTCGCCACCGCTTTGAAGGAAGAGAACCAGGAAGGAATCCTCAACGCGCTTAAGGGTTTAGCTGGTGGTCAGCATGTGGAGGAAGTCCTCAGCAGTTTATCTCCTAATGTCCGGAAGCGTGTTGATTTTCTTAGGGAAATCCAGAGCCAACACGATGAATTAGAGACCAAGTTTTTTGAGGAGAGGGCTGCTCTGGAAGCTAGGAATCAGAAGTTGTATCAACCTCTTTACAACAAGCGTTACGAGATTGTGACTGGTGCTGTTGAAGCTGAAGGAGTTACTACTGAAGCAACCACAAATGAAGAGGATGCTGAAGACAAAGGAGTGCCTGATTTCTGGCTGAATGCATTGAAAAACAATGATGTGCTCTCCGAGGAGATAACAGAGCGTGATGAAGGAGCTCTAAAATATCTGAAGGACATCAAGTGGGCTAGGATAGATAACCCTAAGGGATTCAAACTTGAGTTCTACTTTGACACCAATCCATATTTCAAGAACACCATCTTGACGAAGACATATCACATGATTGATGAAGATGAACCTATTCTTGAGAAGGCAATTGGAACTGAAATCGAGTGGTATCCGGGAAAGTGCTTAACACAGAAGCTCCTTAAGAAGAAGCCTAAGAAGGGATCAAAGAACAATAAGCCAATCACAAAAACTGAAGATTGTGAGAGCTTCTTCAACTTTTTCAGTCCACCCCAAGTCCCTGAAGAGGATGAAGATCTTGATGAAGATGCTGCTGAGGAACTCCAGAATCAGATGGAACAAGATTATGATGTTGGGTCAACCATTCGGGACAAGATCATCCCACATGCAGTCTCCTGGTTTACTGGAGAGGCTATCCAGGATGATGATATAGACATGGACGATGATGACGACGACGATGAAGACATCGATGATGAGGATGATGAGGAGGATGAGGATGAGGATGAGGATGATGATGAAGATGAAGGCCAAGCCAAAAAGAAGGTATCAGGTCAGAAGGGTGCAAGAGCACAACTTGGTGATGGTCAACAGGGTGAGAGGCCTCCAGAGTGCAAACAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

363

Amino Acids

41.49

Weight (kDa)

4.26

Isoelectric Point (pI)

43.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	52 - 293	1.1e-86	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	86
AccIII	TCCGGA	1 cut(s)	150
AciI	CCGC	1 cut(s)	48
AclWI	GGATC	1 cut(s)	679
AcoI	YGGCCR	1 cut(s)	33
AcuI	CTGAAG	6 cut(s)	330, 345, 372, 473, 723, 771
AfiI	CCNNNNNNNGG	2 cut(s)	668, 754
AflII	CTTAAG	2 cut(s)	89, 650
AgsI	TTSAA	6 cut(s)	55, 305, 391, 496, 532, 724
AjnI	CCWGG	3 cut(s)	66, 863, 885
AjuI	GAANNNNNNNTTGG	2 cut(s)	512, 544
AluBI	AGCT	6 cut(s)	101, 239, 308, 440, 646, 717
AluI	AGCT	6 cut(s)	101, 239, 308, 440, 646, 717
Alw21I	GWGCWC	3 cut(s)	408, 442, 1039
Alw26I	GTCTC	2 cut(s)	197, 865
AlwI	GGATC	1 cut(s)	679
Aor13HI	TCCGGA	1 cut(s)	150
AoxI	GGCC	3 cut(s)	33, 994, 1067
ApeKI	GCWGC	2 cut(s)	227, 779
Asp700I	GAANNNNTTC	1 cut(s)	582
AspLEI	GCGC	2 cut(s)	8, 88
AsuC2I	CCSGG	1 cut(s)	624
AsuHPI	GGTGA	2 cut(s)	1058, 1073
AxyI	CCTNAGG	1 cut(s)	486
BanII	GRGCYC	1 cut(s)	442
BbsI	GAAGAC	3 cut(s)	360, 557, 936
Bbv12I	GWGCWC	3 cut(s)	408, 442, 1039
BbvCI	CCTCAGC	2 cut(s)	128, 783
BbvI	GCAGC	2 cut(s)	214, 766
BccI	CCATC	3 cut(s)	548, 796, 1043
BciT130I	CCWGG	3 cut(s)	68, 865, 887
BciVI	GTATCC	1 cut(s)	630
BcnI	CCSGG	1 cut(s)	624
BcoDI	GTCTC	2 cut(s)	197, 865
BfaI	CTAG	2 cut(s)	240, 471
BfoI	RGCGCY	1 cut(s)	9
BfrI	CTTAAG	2 cut(s)	89, 650
BfuI	GTATCC	1 cut(s)	630
BglII	AGATCT	1 cut(s)	763
BisI	GCNGC	2 cut(s)	228, 780
BlsI	GCNGC	2 cut(s)	229, 781
Bme1390I	CCNGG	4 cut(s)	68, 624, 865, 887
BmrFI	CCNGG	4 cut(s)	68, 624, 865, 887
BmsI	GCATC	2 cut(s)	337, 766
BpiI	GAAGAC	3 cut(s)	360, 557, 936
BplI	GAGNNNNNCTC	2 cut(s)	214, 246
BpmI	CTGGAG	3 cut(s)	776, 894, 1056
Bpu10I	CCTNAGC	2 cut(s)	128, 783
BpuEI	CTTGAG	2 cut(s)	521, 608
BpuMI	CCSGG	1 cut(s)	624
Bsa29I	ATCGAT	1 cut(s)	936
BsaBI	GATNNNNATC	1 cut(s)	762
BsaI	GGTCTC	1 cut(s)	197
BsaJI	CCNNGG	1 cut(s)	411
BsaWI	WCCGGW	1 cut(s)	150
BsaXI	ACNNNNNCTCC	2 cut(s)	630, 660
Bsc4I	CCNNNNNNNGG	2 cut(s)	668, 754
Bse1I	ACTGG	2 cut(s)	298, 877
Bse21I	CCTNAGG	1 cut(s)	486
Bse8I	GATNNNNATC	1 cut(s)	762
BseAI	TCCGGA	1 cut(s)	150
BseBI	CCWGG	3 cut(s)	68, 865, 887
BseCI	ATCGAT	1 cut(s)	936
BseDI	CCNNGG	1 cut(s)	411
BseGI	GGATG	9 cut(s)	352, 763, 846, 895, 952, 964, 970, 976, 982
BseJI	GATNNNNATC	1 cut(s)	762
BseLI	CCNNNNNNNGG	2 cut(s)	668, 754
BseMII	CTCAG	2 cut(s)	142, 774
BseNI	ACTGG	2 cut(s)	298, 877
BseRI	GAGGAG	3 cut(s)	233, 428, 968
BseXI	GCAGC	2 cut(s)	214, 766
Bsh1236I	CGCG	1 cut(s)	86
BshFI	GGCC	3 cut(s)	35, 996, 1069
BshVI	ATCGAT	1 cut(s)	936
BsiHKAI	GWGCWC	3 cut(s)	408, 442, 1039
BsiSI	CCGG	2 cut(s)	151, 623
BslFI	GGGAC	2 cut(s)	731, 851
BslI	CCNNNNNNNGG	2 cut(s)	668, 754
BsmAI	GTCTC	2 cut(s)	197, 865
BsmFI	GGGAC	2 cut(s)	731, 851
BsmI	GAATGC	1 cut(s)	388
BsnI	GGCC	3 cut(s)	35, 996, 1069
Bso31I	GGTCTC	1 cut(s)	197
Bsp1286I	GDGCHC	3 cut(s)	408, 442, 1039
Bsp13I	TCCGGA	1 cut(s)	150
Bsp143I	GATC	4 cut(s)	37, 671, 763, 843
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	3 cut(s)	35, 996, 1069
BspCNI	CTCAG	2 cut(s)	141, 775
BspDI	ATCGAT	1 cut(s)	936
BspEI	TCCGGA	1 cut(s)	150
BspFNI	CGCG	1 cut(s)	86
BspPI	GGATC	1 cut(s)	679
BspTI	CTTAAG	2 cut(s)	89, 650
BspTNI	GGTCTC	1 cut(s)	197
BsrI	ACTGG	2 cut(s)	298, 877
BssECI	CCNNGG	1 cut(s)	411
BssMI	GATC	4 cut(s)	37, 671, 763, 843
Bst2UI	CCWGG	3 cut(s)	68, 865, 887
Bst6I	CTCTTC	3 cut(s)	54, 336, 747
BstAFI	CTTAAG	2 cut(s)	89, 650
BstDEI	CTNAG	5 cut(s)	128, 170, 486, 663, 783
BstF5I	GGATG	9 cut(s)	352, 763, 846, 895, 952, 964, 970, 976, 982
BstFNI	CGCG	1 cut(s)	86
BstH2I	RGCGCY	1 cut(s)	9
BstHHI	GCGC	2 cut(s)	8, 88
BstKTI	GATC	4 cut(s)	40, 674, 766, 846
BstMAI	GTCTC	2 cut(s)	197, 865
BstMBI	GATC	4 cut(s)	37, 671, 763, 843
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 236, 305
BstNI	CCWGG	3 cut(s)	68, 865, 887
BstNSI	RCATGY	2 cut(s)	116, 857
BstSCI	CCNGG	4 cut(s)	66, 622, 863, 885
BstUI	CGCG	1 cut(s)	86
BstV1I	GCAGC	2 cut(s)	214, 766
BstV2I	GAAGAC	3 cut(s)	360, 557, 936
BstX2I	RGATCY	1 cut(s)	763
BstYI	RGATCY	1 cut(s)	763
Bsu15I	ATCGAT	1 cut(s)	936
Bsu36I	CCTNAGG	1 cut(s)	486
BsuI	GTATCC	1 cut(s)	630
BsuRI	GGCC	3 cut(s)	35, 996, 1069
BsuTUI	ATCGAT	1 cut(s)	936
BtsCI	GGATG	9 cut(s)	352, 763, 846, 895, 952, 964, 970, 976, 982
CfoI	GCGC	2 cut(s)	8, 88
ClaI	ATCGAT	1 cut(s)	936
CviAII	CATG	5 cut(s)	31, 113, 562, 854, 904
DdeI	CTNAG	5 cut(s)	128, 170, 486, 663, 783
DpnI	GATC	4 cut(s)	39, 673, 765, 845
DpnII	GATC	4 cut(s)	37, 671, 763, 843
EaeI	YGGCCR	1 cut(s)	33
Eam1104I	CTCTTC	3 cut(s)	54, 336, 747
EarI	CTCTTC	3 cut(s)	54, 336, 747
Ecl136II	GAGCTC	1 cut(s)	440
Eco147I	AGGCCT	1 cut(s)	1069
Eco24I	GRGCYC	1 cut(s)	442
Eco31I	GGTCTC	1 cut(s)	197
Eco53kI	GAGCTC	1 cut(s)	440
Eco57I	CTGAAG	6 cut(s)	330, 345, 372, 473, 723, 771
Eco81I	CCTNAGG	1 cut(s)	486
EcoICRI	GAGCTC	1 cut(s)	440
EcoRII	CCWGG	3 cut(s)	66, 863, 885
EcoT22I	ATGCAT	1 cut(s)	388
EcoT38I	GRGCYC	1 cut(s)	442
FaeI	CATG	5 cut(s)	34, 116, 565, 857, 907
FaiI	YATR	9 cut(s)	32, 114, 526, 556, 563, 816, 855, 899, 905
FaqI	GGGAC	2 cut(s)	731, 851
FatI	CATG	5 cut(s)	30, 112, 561, 853, 903
Fnu4HI	GCNGC	2 cut(s)	228, 780
FokI	GGATG	9 cut(s)	359, 770, 833, 902, 959, 971, 977, 983, 989
FriOI	GRGCYC	1 cut(s)	442
Fsp4HI	GCNGC	2 cut(s)	228, 780
FspBI	CTAG	2 cut(s)	240, 471
GlaI	GCGC	2 cut(s)	7, 87
GluI	GCNGC	2 cut(s)	228, 780
GsuI	CTGGAG	3 cut(s)	776, 894, 1056
HaeII	RGCGCY	1 cut(s)	9
HaeIII	GGCC	3 cut(s)	35, 996, 1069
HapII	CCGG	2 cut(s)	151, 623
HhaI	GCGC	2 cut(s)	8, 88
Hin1II	CATG	5 cut(s)	34, 116, 565, 857, 907
Hin6I	GCGC	2 cut(s)	6, 86
HinP1I	GCGC	2 cut(s)	6, 86
HincII	GTYRAC	2 cut(s)	828, 1055
HindII	GTYRAC	2 cut(s)	828, 1055
HinfI	GANTC	4 cut(s)	75, 244, 492, 796
HpaII	CCGG	2 cut(s)	151, 623
HphI	GGTGA	2 cut(s)	1058, 1073
Hpy166II	GTNNAC	4 cut(s)	737, 828, 870, 1055
Hpy188I	TCNGA	5 cut(s)	249, 412, 453, 801, 1023
Hpy8I	GTNNAC	4 cut(s)	737, 828, 870, 1055
Hpy99I	CGWCG	2 cut(s)	923, 926
HpyCH4V	TGCA	4 cut(s)	386, 857, 1031, 1080
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 236, 305
HpyF3I	CTNAG	5 cut(s)	128, 170, 486, 663, 783
Hsp92II	CATG	5 cut(s)	34, 116, 565, 857, 907
HspAI	GCGC	2 cut(s)	6, 86
Kpn2I	TCCGGA	1 cut(s)	150
Kzo9I	GATC	4 cut(s)	37, 671, 763, 843
LmnI	GCTCC	2 cut(s)	437, 651
Lsp1109I	GCAGC	2 cut(s)	214, 766
LweI	GCATC	2 cut(s)	337, 766
MaeI	CTAG	2 cut(s)	240, 471
MaeIII	GTNAC	3 cut(s)	278, 289, 316
MalI	GATC	4 cut(s)	39, 673, 765, 845
MboI	GATC	4 cut(s)	37, 671, 763, 843
MfeI	CAATTG	1 cut(s)	597
MflI	RGATCY	1 cut(s)	763
MhlI	GDGCHC	3 cut(s)	408, 442, 1039
MluCI	AATT	2 cut(s)	197, 597
Mph1103I	ATGCAT	1 cut(s)	388
MroI	TCCGGA	1 cut(s)	150
MroXI	GAANNNNTTC	1 cut(s)	582
MseI	TTAA	3 cut(s)	90, 635, 651
MslI	CAYNNNNRTG	1 cut(s)	29
MspCI	CTTAAG	2 cut(s)	89, 650
MspI	CCGG	2 cut(s)	151, 623
MspR9I	CCNGG	4 cut(s)	68, 624, 865, 887
MunI	CAATTG	1 cut(s)	597
Mva1269I	GAATGC	1 cut(s)	388
MvaI	CCWGG	3 cut(s)	68, 865, 887
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	3 cut(s)	41, 236, 305
NciI	CCSGG	1 cut(s)	624
NdeII	GATC	4 cut(s)	37, 671, 763, 843
NlaIII	CATG	5 cut(s)	34, 116, 565, 857, 907
NmuCI	GTSAC	1 cut(s)	289
NsiI	ATGCAT	1 cut(s)	388
NspI	RCATGY	2 cut(s)	116, 857
PceI	AGGCCT	1 cut(s)	1069
PcsI	WCGNNNNNNNCGW	1 cut(s)	915
PctI	GAATGC	1 cut(s)	388
PdmI	GAANNNNTTC	1 cut(s)	582
PfeI	GAWTC	4 cut(s)	75, 244, 492, 796
PfoI	TCCNGGA	2 cut(s)	622, 885
PkrI	GCNGC	2 cut(s)	229, 781
Psp124BI	GAGCTC	1 cut(s)	442
Psp6I	CCWGG	3 cut(s)	66, 863, 885
PspGI	CCWGG	3 cut(s)	66, 863, 885
PsuI	RGATCY	1 cut(s)	763
RseI	CAYNNNNRTG	1 cut(s)	29
SacI	GAGCTC	1 cut(s)	442
SaqAI	TTAA	3 cut(s)	90, 635, 651
SatI	GCNGC	2 cut(s)	228, 780
Sau3AI	GATC	4 cut(s)	37, 671, 763, 843
ScrFI	CCNGG	4 cut(s)	68, 624, 865, 887
SduI	GDGCHC	3 cut(s)	408, 442, 1039
SfaNI	GCATC	2 cut(s)	337, 766
SmiMI	CAYNNNNRTG	1 cut(s)	29
SmlI	CTYRAG	4 cut(s)	89, 500, 587, 650
SmoI	CTYRAG	4 cut(s)	89, 500, 587, 650
Sse9I	AATT	2 cut(s)	197, 597
SseBI	AGGCCT	1 cut(s)	1069
SsiI	CCGC	1 cut(s)	48
SspMI	CTAG	2 cut(s)	240, 471
SstI	GAGCTC	1 cut(s)	442
StuI	AGGCCT	1 cut(s)	1069
StyD4I	CCNGG	4 cut(s)	66, 622, 863, 885
TaqI	TCGA	2 cut(s)	612, 936
TasI	AATT	2 cut(s)	197, 597
TfiI	GAWTC	4 cut(s)	75, 244, 492, 796
Tru1I	TTAA	3 cut(s)	90, 635, 651
Tru9I	TTAA	3 cut(s)	90, 635, 651
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	2 cut(s)	227, 779
Tsp45I	GTSAC	1 cut(s)	289
Vha464I	CTTAAG	2 cut(s)	89, 650
XceI	RCATGY	2 cut(s)	116, 857
XmnI	GAANNNNTTC	1 cut(s)	582
XspI	CTAG	2 cut(s)	240, 471
Zsp2I	ATGCAT	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.