Rw2G007100

Belongs to the nucleosome assembly protein (NAP) family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
6845105 .. 6848099
2995 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G007100.1

Sequence Viewer

Length: 1101 bp
ATGAGCGCCGACAAGGATAACAACATCAACATGGCCGATCTCGCCACCGCTTTGAAGGAAGAGAACCAGGAAGGAATCCTCAACGCGCTTAAGGGTTTTTGGTGTCTGCAGGGTTTAGCTGGTGGTCAGCATGTGGAGGAGGTCCTCAGCAGTTTATCTCCTAATGTCCGGAAGCGTGTTGATTTTCTTAGGGAAATCCAGAGCCAACACGATGAATTAGAGACCAAGTTTTTTGAGGAGAGGGCTGCTCTGGAAGCTAGGTATCAGAAGTTGTATCAACCTCTTTACAACAAGCGTTACGAGATTGTGACTGGTGCTGTTGAAGCTGAAGGAGTTACTACTGAAGCATCCACAAATGAAGAGGATGATGCTGAAGACAAAGGAGTGCCTGATTTCTGGCTGAATGCATTGAAAAACAATGATGTGCTCTCCGAGGAGATAACAGAGCGTGATGAAGGAGCTCTAAAATATCTGAAGGACATCAAGTGGGCTAGGATAGATAACCCTAAGGGATTCAAACTTGAGTTCTACTTTGACACCAATCCATATTTCAAGAACACCGTCTTGACGAAGACATATCACATGATTGATGAAGATGAACCTATTCTTGAGAAGGCAATTGGAACTGAAATCGAGTGGTATCCGGGAAAGTGCTTAACACAGAAGCTCCTTAAGAAGAAGCCTAAGAAGGGATCAAAGAACAATAAGCCAATCACAAAAACTGAAGATTGTGAGAGCTTCTTCAACTTTTTCAGTCCACCCCAAGTCCCTGAAGAGGATGAAGATCTTGATGAAGATGCTGCTGAGGAACTCCAGAATCAGATGGAACAAGATTATGATGTTGGGTCAACCATTCGGGACAAGATCATCCCACATGCAGTCTCCTGGTTTACTGGAGAGGCTATCCAGGATGATGATATAGACATGGACGACGATGACGACGACGATGAAGACATCGATGATGAGGAAGATGAGGAGGATGAGGATGAGGATGAGGATGATGATGAAGATGAAGGCCAAGCCAAAAAGAAGAAGGGTGCAAGAGCACAACTTGGTGATGGTCAACAGGGTGAGAGGCCTCCAGAGTGCAAACAGCAGTAG

Protein Analysis

366

Amino Acids

42.01

Weight (kDa)

4.25

Isoelectric Point (pI)

45.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 58 - 300 2.7e-89 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000381)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 86
AccIII TCCGGA 1 cut(s) 168
AciI CCGC 1 cut(s) 48
AclWI GGATC 1 cut(s) 700
AcoI YGGCCR 1 cut(s) 33
AcuI CTGAAG 6 cut(s) 348, 363, 393, 494, 744, 792
AfiI CCNNNNNNNGG 2 cut(s) 689, 775
AflII CTTAAG 2 cut(s) 89, 671
AgsI TTSAA 6 cut(s) 55, 323, 412, 517, 553, 745
AjnI CCWGG 3 cut(s) 66, 884, 906
AjuI GAANNNNNNNTTGG 2 cut(s) 533, 565
AluBI AGCT 6 cut(s) 119, 257, 326, 461, 667, 738
AluI AGCT 6 cut(s) 119, 257, 326, 461, 667, 738
Alw21I GWGCWC 3 cut(s) 429, 463, 1048
Alw26I GTCTC 2 cut(s) 215, 886
AlwI GGATC 1 cut(s) 700
Aor13HI TCCGGA 1 cut(s) 168
AoxI GGCC 3 cut(s) 33, 1015, 1076
ApeKI GCWGC 2 cut(s) 245, 800
Asp700I GAANNNNTTC 1 cut(s) 603
AspLEI GCGC 2 cut(s) 8, 88
AspS9I GGNCC 1 cut(s) 142
AsuC2I CCSGG 1 cut(s) 645
AsuHPI GGTGA 2 cut(s) 1067, 1082
AvaII GGWCC 1 cut(s) 142
AxyI CCTNAGG 1 cut(s) 507
BanII GRGCYC 1 cut(s) 463
BbsI GAAGAC 3 cut(s) 381, 578, 957
Bbv12I GWGCWC 3 cut(s) 429, 463, 1048
BbvCI CCTCAGC 2 cut(s) 146, 804
BbvI GCAGC 2 cut(s) 232, 787
BccI CCATC 2 cut(s) 817, 1052
BciT130I CCWGG 3 cut(s) 68, 886, 908
BciVI GTATCC 1 cut(s) 651
BcnI CCSGG 1 cut(s) 645
BcoDI GTCTC 2 cut(s) 215, 886
BfaI CTAG 2 cut(s) 258, 492
BfmI CTRYAG 1 cut(s) 107
BfoI RGCGCY 1 cut(s) 9
BfrI CTTAAG 2 cut(s) 89, 671
BfuI GTATCC 1 cut(s) 651
BglII AGATCT 1 cut(s) 784
BisI GCNGC 2 cut(s) 246, 801
BlsI GCNGC 2 cut(s) 247, 802
Bme1390I CCNGG 4 cut(s) 68, 645, 886, 908
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 142
BmrFI CCNGG 4 cut(s) 68, 645, 886, 908
BmsI GCATC 3 cut(s) 356, 358, 787
BpiI GAAGAC 3 cut(s) 381, 578, 957
BplI GAGNNNNNCTC 2 cut(s) 232, 264
BpmI CTGGAG 3 cut(s) 797, 915, 1065
Bpu10I CCTNAGC 2 cut(s) 146, 804
BpuEI CTTGAG 2 cut(s) 542, 629
BpuMI CCSGG 1 cut(s) 645
Bsa29I ATCGAT 1 cut(s) 957
BsaBI GATNNNNATC 1 cut(s) 783
BsaI GGTCTC 1 cut(s) 215
BsaJI CCNNGG 1 cut(s) 432
BsaWI WCCGGW 1 cut(s) 168
BsaXI ACNNNNNCTCC 2 cut(s) 651, 681
Bsc4I CCNNNNNNNGG 2 cut(s) 689, 775
Bse1I ACTGG 2 cut(s) 316, 898
Bse21I CCTNAGG 1 cut(s) 507
Bse8I GATNNNNATC 1 cut(s) 783
BseAI TCCGGA 1 cut(s) 168
BseBI CCWGG 3 cut(s) 68, 886, 908
BseCI ATCGAT 1 cut(s) 957
BseDI CCNNGG 1 cut(s) 432
BseGI GGATG 9 cut(s) 347, 370, 784, 867, 916, 985, 991, 997, 1003
BseJI GATNNNNATC 1 cut(s) 783
BseLI CCNNNNNNNGG 2 cut(s) 689, 775
BseMII CTCAG 2 cut(s) 160, 795
BseNI ACTGG 2 cut(s) 316, 898
BseRI GAGGAG 4 cut(s) 152, 251, 449, 989
BseXI GCAGC 2 cut(s) 232, 787
Bsh1236I CGCG 1 cut(s) 86
BshFI GGCC 3 cut(s) 35, 1017, 1078
BshVI ATCGAT 1 cut(s) 957
BsiHKAI GWGCWC 3 cut(s) 429, 463, 1048
BsiSI CCGG 2 cut(s) 169, 644
BslFI GGGAC 2 cut(s) 752, 872
BslI CCNNNNNNNGG 2 cut(s) 689, 775
BsmAI GTCTC 2 cut(s) 215, 886
BsmFI GGGAC 2 cut(s) 752, 872
BsmI GAATGC 1 cut(s) 409
BsnI GGCC 3 cut(s) 35, 1017, 1078
Bso31I GGTCTC 1 cut(s) 215
Bsp1286I GDGCHC 3 cut(s) 429, 463, 1048
Bsp13I TCCGGA 1 cut(s) 168
Bsp143I GATC 4 cut(s) 37, 692, 784, 864
BspACI CCGC 1 cut(s) 48
BspANI GGCC 3 cut(s) 35, 1017, 1078
BspCNI CTCAG 2 cut(s) 159, 796
BspDI ATCGAT 1 cut(s) 957
BspEI TCCGGA 1 cut(s) 168
BspFNI CGCG 1 cut(s) 86
BspMAI CTGCAG 1 cut(s) 111
BspPI GGATC 1 cut(s) 700
BspTI CTTAAG 2 cut(s) 89, 671
BspTNI GGTCTC 1 cut(s) 215
BsrI ACTGG 2 cut(s) 316, 898
BssECI CCNNGG 1 cut(s) 432
BssMI GATC 4 cut(s) 37, 692, 784, 864
Bst2UI CCWGG 3 cut(s) 68, 886, 908
Bst4CI ACNGT 1 cut(s) 562
Bst6I CTCTTC 3 cut(s) 54, 354, 768
BstAFI CTTAAG 2 cut(s) 89, 671
BstDEI CTNAG 5 cut(s) 146, 188, 507, 684, 804
BstF5I GGATG 9 cut(s) 347, 370, 784, 867, 916, 985, 991, 997, 1003
BstFNI CGCG 1 cut(s) 86
BstH2I RGCGCY 1 cut(s) 9
BstHHI GCGC 2 cut(s) 8, 88
BstKTI GATC 4 cut(s) 40, 695, 787, 867
BstMAI GTCTC 2 cut(s) 215, 886
BstMBI GATC 4 cut(s) 37, 692, 784, 864
BstMWI GCNNNNNNNGC 3 cut(s) 41, 254, 323
BstNI CCWGG 3 cut(s) 68, 886, 908
BstNSI RCATGY 2 cut(s) 134, 878
BstSCI CCNGG 4 cut(s) 66, 643, 884, 906
BstSFI CTRYAG 1 cut(s) 107
BstUI CGCG 1 cut(s) 86
BstV1I GCAGC 2 cut(s) 232, 787
BstV2I GAAGAC 3 cut(s) 381, 578, 957
BstX2I RGATCY 1 cut(s) 784
BstYI RGATCY 1 cut(s) 784
Bsu15I ATCGAT 1 cut(s) 957
Bsu36I CCTNAGG 1 cut(s) 507
BsuI GTATCC 1 cut(s) 651
BsuRI GGCC 3 cut(s) 35, 1017, 1078
BsuTUI ATCGAT 1 cut(s) 957
BtsCI GGATG 9 cut(s) 347, 370, 784, 867, 916, 985, 991, 997, 1003
CfoI GCGC 2 cut(s) 8, 88
Cfr13I GGNCC 1 cut(s) 142
ClaI ATCGAT 1 cut(s) 957
CviAII CATG 5 cut(s) 31, 131, 583, 875, 925
DdeI CTNAG 5 cut(s) 146, 188, 507, 684, 804
DpnI GATC 4 cut(s) 39, 694, 786, 866
DpnII GATC 4 cut(s) 37, 692, 784, 864
EaeI YGGCCR 1 cut(s) 33
Eam1104I CTCTTC 3 cut(s) 54, 354, 768
EarI CTCTTC 3 cut(s) 54, 354, 768
Ecl136II GAGCTC 1 cut(s) 461
Eco147I AGGCCT 1 cut(s) 1078
Eco24I GRGCYC 1 cut(s) 463
Eco31I GGTCTC 1 cut(s) 215
Eco47I GGWCC 1 cut(s) 142
Eco53kI GAGCTC 1 cut(s) 461
Eco57I CTGAAG 6 cut(s) 348, 363, 393, 494, 744, 792
Eco81I CCTNAGG 1 cut(s) 507
EcoICRI GAGCTC 1 cut(s) 461
EcoO109I RGGNCCY 1 cut(s) 142
EcoRII CCWGG 3 cut(s) 66, 884, 906
EcoT22I ATGCAT 1 cut(s) 409
EcoT38I GRGCYC 1 cut(s) 463
FaeI CATG 5 cut(s) 34, 134, 586, 878, 928
FaiI YATR 9 cut(s) 32, 132, 547, 577, 584, 837, 876, 920, 926
FaqI GGGAC 2 cut(s) 752, 872
FatI CATG 5 cut(s) 30, 130, 582, 874, 924
Fnu4HI GCNGC 2 cut(s) 246, 801
FokI GGATG 9 cut(s) 334, 377, 791, 854, 923, 992, 998, 1004, 1010
FriOI GRGCYC 1 cut(s) 463
Fsp4HI GCNGC 2 cut(s) 246, 801
FspBI CTAG 2 cut(s) 258, 492
GlaI GCGC 2 cut(s) 7, 87
GluI GCNGC 2 cut(s) 246, 801
GsuI CTGGAG 3 cut(s) 797, 915, 1065
HaeII RGCGCY 1 cut(s) 9
HaeIII GGCC 3 cut(s) 35, 1017, 1078
HapII CCGG 2 cut(s) 169, 644
HhaI GCGC 2 cut(s) 8, 88
Hin1II CATG 5 cut(s) 34, 134, 586, 878, 928
Hin6I GCGC 2 cut(s) 6, 86
HinP1I GCGC 2 cut(s) 6, 86
HincII GTYRAC 2 cut(s) 849, 1064
HindII GTYRAC 2 cut(s) 849, 1064
HinfI GANTC 3 cut(s) 75, 513, 817
HpaII CCGG 2 cut(s) 169, 644
HphI GGTGA 2 cut(s) 1067, 1082
Hpy166II GTNNAC 4 cut(s) 758, 849, 891, 1064
Hpy188I TCNGA 4 cut(s) 267, 433, 474, 822
Hpy8I GTNNAC 4 cut(s) 758, 849, 891, 1064
Hpy99I CGWCG 3 cut(s) 935, 944, 947
HpyAV CCTTC 9 cut(s) 49, 65, 323, 449, 469, 607, 682, 1007, 1027
HpyCH4III ACNGT 1 cut(s) 562
HpyCH4V TGCA 5 cut(s) 109, 407, 878, 1040, 1089
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 254, 323
HpyF3I CTNAG 5 cut(s) 146, 188, 507, 684, 804
Hsp92II CATG 5 cut(s) 34, 134, 586, 878, 928
HspAI GCGC 2 cut(s) 6, 86
Kpn2I TCCGGA 1 cut(s) 168
Kzo9I GATC 4 cut(s) 37, 692, 784, 864
LmnI GCTCC 2 cut(s) 458, 672
Lsp1109I GCAGC 2 cut(s) 232, 787
LweI GCATC 3 cut(s) 356, 358, 787
MaeI CTAG 2 cut(s) 258, 492
MaeIII GTNAC 3 cut(s) 296, 307, 334
MalI GATC 4 cut(s) 39, 694, 786, 866
MboI GATC 4 cut(s) 37, 692, 784, 864
MfeI CAATTG 1 cut(s) 618
MflI RGATCY 1 cut(s) 784
MhlI GDGCHC 3 cut(s) 429, 463, 1048
MluCI AATT 2 cut(s) 215, 618
Mph1103I ATGCAT 1 cut(s) 409
MroI TCCGGA 1 cut(s) 168
MroXI GAANNNNTTC 1 cut(s) 603
MseI TTAA 3 cut(s) 90, 656, 672
MslI CAYNNNNRTG 1 cut(s) 29
MspCI CTTAAG 2 cut(s) 89, 671
MspI CCGG 2 cut(s) 169, 644
MspR9I CCNGG 4 cut(s) 68, 645, 886, 908
MunI CAATTG 1 cut(s) 618
Mva1269I GAATGC 1 cut(s) 409
MvaI CCWGG 3 cut(s) 68, 886, 908
MvnI CGCG 1 cut(s) 86
MwoI GCNNNNNNNGC 3 cut(s) 41, 254, 323
NciI CCSGG 1 cut(s) 645
NdeII GATC 4 cut(s) 37, 692, 784, 864
NlaIII CATG 5 cut(s) 34, 134, 586, 878, 928
NmuCI GTSAC 1 cut(s) 307
NsiI ATGCAT 1 cut(s) 409
NspI RCATGY 2 cut(s) 134, 878
PceI AGGCCT 1 cut(s) 1078
PcsI WCGNNNNNNNCGW 2 cut(s) 936, 939
PctI GAATGC 1 cut(s) 409
PdmI GAANNNNTTC 1 cut(s) 603
PfeI GAWTC 3 cut(s) 75, 513, 817
PfoI TCCNGGA 2 cut(s) 643, 906
PkrI GCNGC 2 cut(s) 247, 802
PpuMI RGGWCCY 1 cut(s) 142
Psp124BI GAGCTC 1 cut(s) 463
Psp5II RGGWCCY 1 cut(s) 142
Psp6I CCWGG 3 cut(s) 66, 884, 906
PspGI CCWGG 3 cut(s) 66, 884, 906
PspPI GGNCC 1 cut(s) 142
PspPPI RGGWCCY 1 cut(s) 142
PstI CTGCAG 1 cut(s) 111
PsuI RGATCY 1 cut(s) 784
RseI CAYNNNNRTG 1 cut(s) 29
SacI GAGCTC 1 cut(s) 463
SaqAI TTAA 3 cut(s) 90, 656, 672
SatI GCNGC 2 cut(s) 246, 801
Sau3AI GATC 4 cut(s) 37, 692, 784, 864
Sau96I GGNCC 1 cut(s) 142
ScrFI CCNGG 4 cut(s) 68, 645, 886, 908
SduI GDGCHC 3 cut(s) 429, 463, 1048
SfaNI GCATC 3 cut(s) 356, 358, 787
SfcI CTRYAG 1 cut(s) 107
SinI GGWCC 1 cut(s) 142
SmiMI CAYNNNNRTG 1 cut(s) 29
SmlI CTYRAG 4 cut(s) 89, 521, 608, 671
SmoI CTYRAG 4 cut(s) 89, 521, 608, 671
Sse9I AATT 2 cut(s) 215, 618
SseBI AGGCCT 1 cut(s) 1078
SsiI CCGC 1 cut(s) 48
SspMI CTAG 2 cut(s) 258, 492
SstI GAGCTC 1 cut(s) 463
StuI AGGCCT 1 cut(s) 1078
StyD4I CCNGG 4 cut(s) 66, 643, 884, 906
TaaI ACNGT 1 cut(s) 562
TaqI TCGA 2 cut(s) 633, 957
TasI AATT 2 cut(s) 215, 618
TfiI GAWTC 3 cut(s) 75, 513, 817
Tru1I TTAA 3 cut(s) 90, 656, 672
Tru9I TTAA 3 cut(s) 90, 656, 672
TseFI GTSAC 1 cut(s) 307
TseI GCWGC 2 cut(s) 245, 800
Tsp45I GTSAC 1 cut(s) 307
Vha464I CTTAAG 2 cut(s) 89, 671
VpaK11BI GGWCC 1 cut(s) 142
XceI RCATGY 2 cut(s) 134, 878
XmnI GAANNNNTTC 1 cut(s) 603
XspI CTAG 2 cut(s) 258, 492
Zsp2I ATGCAT 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.