Rw5G039620

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000381
Physical Location & Seq
Forward (+)
69866505 .. 69867275
771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G039620.1

Sequence Viewer

Length: 588 bp
ATGGACATCCATGAGAGACTACCTCATAATGTCAGAAAGCGGGTTGAGTTCATGAGAGAAATTGAGAGTCAACGTGATGAATTAGAGGCCAAGCTCTTCAAGGAGAAAGCTGAACTTGAAGCCAAGTATCAGAAATTATATCAGAATCTCTATAGCAAGCGGGACATCAAGTGTTTTAAGATACATAATTCGAAGGGGTTCAAGCTTGAGTTCGACTTTGACACCAATCCATTTTTCAAAAACTCTGTTTTGACAAAGACATATCACATGATTGATGAACATGAACCAAATAGCATAGTAGGGATGGAGATTGAATGGTATCCAGCAAAGTGCCTGACACAGAAGATTGTTAAGAAGAAGCATAAGAAGGGATCAAAGAATTCTAAGCTTGTGACTAAAACTAAAAATTGTAAAAGTTTCTTCAATTTCTTTAGTCCACCTCAAGTCTCCAAGGACGATGAAGTTATTGATGAAGTTGCTACCGAGGAACTCAAAAACCAGAACAAACAAGACTATGATGTCGGGTCAACCATTTGTTATCAGATCATTCCACATGCAGTTTCGTGGTTTACTGGAGAAGCTTTTTAG

Protein Analysis

195

Amino Acids

23.13

Weight (kDa)

8.7

Isoelectric Point (pI)

29.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 55 - 193 3.1e-43 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000381)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 518
AciI CCGC 2 cut(s) 40, 160
AclWI GGATC 1 cut(s) 379
AcsI RAATTY 1 cut(s) 379
AgsI TTSAA 6 cut(s) 100, 119, 202, 238, 314, 424
AjuI GAANNNNNNNTTGG 2 cut(s) 218, 250
AluBI AGCT 5 cut(s) 94, 110, 205, 388, 581
AluI AGCT 5 cut(s) 94, 110, 205, 388, 581
Alw26I GTCTC 2 cut(s) 10, 451
AlwI GGATC 1 cut(s) 379
AoxI GGCC 1 cut(s) 87
ApoI RAATTY 1 cut(s) 379
Asp700I GAANNNNTTC 1 cut(s) 197
AsuII TTCGAA 1 cut(s) 191
BccI CCATC 1 cut(s) 298
BciVI GTATCC 1 cut(s) 330
BcoDI GTCTC 2 cut(s) 10, 451
BfmI CTRYAG 1 cut(s) 151
BfuI GTATCC 1 cut(s) 330
BplI GAGNNNNNCTC 2 cut(s) 7, 39
Bpu14I TTCGAA 1 cut(s) 191
BpuEI CTTGAG 2 cut(s) 227, 426
BsaJI CCNNGG 2 cut(s) 450, 483
Bse1I ACTGG 1 cut(s) 577
BseDI CCNNGG 2 cut(s) 450, 483
BseGI GGATG 2 cut(s) 6, 309
BseNI ACTGG 1 cut(s) 577
BshFI GGCC 1 cut(s) 89
BslFI GGGAC 1 cut(s) 176
BsmAI GTCTC 2 cut(s) 10, 451
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 1 cut(s) 89
Bsp119I TTCGAA 1 cut(s) 191
Bsp143I GATC 2 cut(s) 371, 543
BspACI CCGC 2 cut(s) 40, 160
BspANI GGCC 1 cut(s) 89
BspHI TCATGA 1 cut(s) 51
BspPI GGATC 1 cut(s) 379
BspQI GCTCTTC 1 cut(s) 101
BspT104I TTCGAA 1 cut(s) 191
BsrI ACTGG 1 cut(s) 577
BssECI CCNNGG 2 cut(s) 450, 483
BssMI GATC 2 cut(s) 371, 543
BssT1I CCWWGG 1 cut(s) 450
Bst6I CTCTTC 1 cut(s) 101
BstBI TTCGAA 1 cut(s) 191
BstC8I GCNNGC 1 cut(s) 158
BstDEI CTNAG 1 cut(s) 384
BstF5I GGATG 2 cut(s) 6, 309
BstKTI GATC 2 cut(s) 374, 546
BstMAI GTCTC 2 cut(s) 10, 451
BstMBI GATC 2 cut(s) 371, 543
BstNSI RCATGY 1 cut(s) 557
BstSFI CTRYAG 1 cut(s) 151
BsuI GTATCC 1 cut(s) 330
BsuRI GGCC 1 cut(s) 89
BtsCI GGATG 2 cut(s) 6, 309
Cac8I GCNNGC 1 cut(s) 158
CciI TCATGA 1 cut(s) 51
CviAII CATG 5 cut(s) 11, 52, 268, 281, 554
CviJI RGCY 7 cut(s) 89, 94, 110, 122, 205, 388, 581
CviKI_1 RGCY 7 cut(s) 89, 94, 110, 122, 205, 388, 581
DdeI CTNAG 1 cut(s) 384
DpnI GATC 2 cut(s) 373, 545
DpnII GATC 2 cut(s) 371, 543
DrdI GACNNNNNNGTC 1 cut(s) 518
DseDI GACNNNNNNGTC 1 cut(s) 518
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Eco130I CCWWGG 1 cut(s) 450
EcoRI GAATTC 1 cut(s) 379
EcoT14I CCWWGG 1 cut(s) 450
ErhI CCWWGG 1 cut(s) 450
FaeI CATG 5 cut(s) 14, 55, 271, 284, 557
FalI AAGNNNNNCTT 2 cut(s) 99, 131
FaqI GGGAC 1 cut(s) 176
FatI CATG 5 cut(s) 10, 51, 267, 280, 553
FauI CCCGC 2 cut(s) 33, 153
FokI GGATG 1 cut(s) 316
HaeIII GGCC 1 cut(s) 89
Hin1II CATG 5 cut(s) 14, 55, 271, 284, 557
HincII GTYRAC 2 cut(s) 71, 528
HindII GTYRAC 2 cut(s) 71, 528
HindIII AAGCTT 3 cut(s) 203, 386, 579
HinfI GANTC 2 cut(s) 67, 145
Hpy166II GTNNAC 4 cut(s) 71, 437, 528, 570
Hpy188I TCNGA 4 cut(s) 35, 132, 144, 543
Hpy188III TCNNGA 1 cut(s) 52
Hpy8I GTNNAC 4 cut(s) 71, 437, 528, 570
HpyAV CCTTC 2 cut(s) 187, 361
HpyCH4IV ACGT 1 cut(s) 73
HpyCH4V TGCA 1 cut(s) 557
HpyF3I CTNAG 1 cut(s) 384
HpySE526I ACGT 1 cut(s) 73
Hsp92II CATG 5 cut(s) 14, 55, 271, 284, 557
Kzo9I GATC 2 cut(s) 371, 543
LguI GCTCTTC 1 cut(s) 101
LpnPI CCDG 4 cut(s) 336, 347, 512, 558
MaeII ACGT 1 cut(s) 73
MaeIII GTNAC 1 cut(s) 391
MalI GATC 2 cut(s) 373, 545
MboI GATC 2 cut(s) 371, 543
MboII GAAGA 4 cut(s) 88, 355, 367, 412
MluCI AATT 7 cut(s) 60, 80, 134, 187, 379, 406, 424
MlyI GAGTC 1 cut(s) 76
MnlI CCTC 4 cut(s) 33, 79, 450, 478
MroXI GAANNNNTTC 1 cut(s) 197
MseI TTAA 2 cut(s) 177, 351
NdeII GATC 2 cut(s) 371, 543
NlaIII CATG 5 cut(s) 14, 55, 271, 284, 557
NmuCI GTSAC 1 cut(s) 391
NspI RCATGY 1 cut(s) 557
NspV TTCGAA 1 cut(s) 191
PagI TCATGA 1 cut(s) 51
PciSI GCTCTTC 1 cut(s) 101
PdmI GAANNNNTTC 1 cut(s) 197
PfeI GAWTC 1 cut(s) 145
PleI GAGTC 1 cut(s) 75
PpsI GAGTC 1 cut(s) 75
SapI GCTCTTC 1 cut(s) 101
SaqAI TTAA 2 cut(s) 177, 351
Sau3AI GATC 2 cut(s) 371, 543
SchI GAGTC 1 cut(s) 76
SetI ASST 8 cut(s) 25, 76, 96, 112, 207, 390, 442, 583
SfcI CTRYAG 1 cut(s) 151
SfuI TTCGAA 1 cut(s) 191
SmlI CTYRAG 2 cut(s) 206, 441
SmoI CTYRAG 2 cut(s) 206, 441
Sse9I AATT 7 cut(s) 60, 80, 134, 187, 379, 406, 424
SsiI CCGC 2 cut(s) 40, 160
StyI CCWWGG 1 cut(s) 450
TaiI ACGT 1 cut(s) 76
TaqI TCGA 2 cut(s) 191, 213
TasI AATT 7 cut(s) 60, 80, 134, 187, 379, 406, 424
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 2 cut(s) 177, 351
Tru9I TTAA 2 cut(s) 177, 351
TseFI GTSAC 1 cut(s) 391
Tsp45I GTSAC 1 cut(s) 391
TspDTI ATGAA 6 cut(s) 40, 93, 291, 297, 474, 486
XapI RAATTY 1 cut(s) 379
XceI RCATGY 1 cut(s) 557
XmnI GAANNNNTTC 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.