Rh2DG453500

Belongs to the nucleosome assembly protein (NAP) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
65680914 .. 65684384
3471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG453500.1

Sequence Viewer

Length: 1143 bp
ATGAGTAGCAACAAAGATAACTTCGACATGTCAGACCTCGGCGCCTCCCTTCCGGCCGCCGCCGCCGCTCTTAGTGCGGAGGATCGCGCTGGTCTTGTTAATGCTCTCAAGGATAAGCTTCAGAGCTTGGCCGGACAGCATTCCGACATATTAGAAACTTTGTCACCAACGGTCAGGAAACGTGTTGATGTATTGAGAGAGATGCAGAGCCAACATGATGAGTTGGAAAAGAAGTTTTTTGAAGAAAGGGCTGCATTGGAAGCAAAATACCAGAAGCTCTATGAACCTCTCTACACCAAGAGATACGAAATTGTCAACGGTGTAACAGAAGTTGAAGGAGTGAAAAATGAATCTGCAGTGGACCAAGGAGATGATGCCACTGAAGAGAAAGGAGTGCCTGACTTCTGGCTTACGGCAATGAAGACCAATGAAGTTCTTTCTGAGGAGATTTCAGAGCGTGATGAAGGGGCTCTGAAGTACCTCAAGGATATCAAGTGGTATAGGATAGATGAACCGAAAGGATTCAAGCTTGAGTTTTTCTTCAATGCCAATCCTTATTTCAAAAATTCTGTCCTGACAAAAACGTATCACATGATTGATGACGATGAACCTATTTTGGAGAAGGCAATTGGGACGGAGATTGAATGGTATCCTGGGAAAAGCTTGACACAGAAGATCTTGAAGAAGAAGCCAAGAAAGGGATCAAAAAATTCTAAACCCATAACCAAAACTGAAGATTGTGAAAGCTTCTTTAACTTCTTCAACCCTCCTGAGATCCCTGATACTGATGATGGATTTGACGAGGAAGCTGCTGAAGAACTTCAAGGTCAGATGGAGCAGGATTATGACATTGGTTCAACAATAAGAGACAAAATCATTCCCCATGCGGTGTCATGGTTTACTGGGGAGGCTGTTAAGGATGAATTCGAAGATATAGAAGATGATGATGATGATGTAGATGAGAATGAAGACGAAGACGAGGACGAAGATGAAGATGAAGATGAAGAAGACGATGAGGATGATGATGATGATGATGATGAGGAAGAGAAAGGAAGGAAAAAGCCATCTGCTGGAGCTAAGAAAAGTGGTAAGGCACAAGGAGCAGAAGGTGGCGAGCGTCCTCCAGAGTGCAAGCAGCAGTAG

Protein Analysis

380

Amino Acids

43.19

Weight (kDa)

4.31

Isoelectric Point (pI)

41.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 60 - 303 2.7e-87 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000381)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 41
AccB7I CCANNNNNTGG 1 cut(s) 1070
AccBSI CCGCTC 1 cut(s) 68
AccII CGCG 1 cut(s) 87
AciI CCGC 6 cut(s) 57, 60, 63, 66, 77, 887
AclWI GGATC 3 cut(s) 90, 709, 769
AcoI YGGCCR 2 cut(s) 54, 129
AcsI RAATTY 3 cut(s) 565, 709, 923
AcuI CTGAAG 5 cut(s) 104, 402, 494, 753, 834
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 1 cut(s) 479
AfiI CCNNNNNNNGG 2 cut(s) 698, 1070
AflIII ACRYGT 2 cut(s) 27, 181
AjnI CCWGG 1 cut(s) 652
AjuI GAANNNNNNNTTGG 2 cut(s) 542, 574
AluBI AGCT 8 cut(s) 118, 126, 277, 529, 663, 747, 809, 1076
AluI AGCT 8 cut(s) 118, 126, 277, 529, 663, 747, 809, 1076
Alw26I GTCTC 1 cut(s) 861
AlwI GGATC 3 cut(s) 90, 709, 769
AoxI GGCC 2 cut(s) 54, 129
ApeKI GCWGC 3 cut(s) 251, 809, 1135
ApoI RAATTY 3 cut(s) 565, 709, 923
ArsI GACNNNNNNTTYG 2 cut(s) 555, 587
Asp700I GAANNNNTTC 2 cut(s) 521, 819
AspLEI GCGC 2 cut(s) 44, 89
AspS9I GGNCC 1 cut(s) 361
AsuHPI GGTGA 1 cut(s) 156
AsuII TTCGAA 1 cut(s) 927
AvaII GGWCC 1 cut(s) 361
BanI GGYRCC 1 cut(s) 41
BanII GRGCYC 1 cut(s) 472
BbsI GAAGAC 4 cut(s) 428, 975, 981, 1014
BbvI GCAGC 2 cut(s) 238, 796
BccI CCATC 3 cut(s) 785, 826, 1072
BceAI ACGGC 1 cut(s) 429
BcgI CGANNNNNNTGC 2 cut(s) 791, 825
BciT130I CCWGG 1 cut(s) 654
BciVI GTATCC 1 cut(s) 660
BcoDI GTCTC 1 cut(s) 861
BfmI CTRYAG 1 cut(s) 354
BfoI RGCGCY 1 cut(s) 45
BfuI GTATCC 1 cut(s) 660
BglII AGATCT 1 cut(s) 675
BisI GCNGC 7 cut(s) 57, 60, 63, 66, 252, 810, 1136
BlsI GCNGC 7 cut(s) 58, 61, 64, 67, 253, 811, 1137
Bme1390I CCNGG 1 cut(s) 654
Bme18I GGWCC 1 cut(s) 361
BmgT120I GGNCC 1 cut(s) 361
BmiI GGNNCC 1 cut(s) 43
BmrFI CCNGG 1 cut(s) 654
BmrI ACTGGG 1 cut(s) 912
BmsI GCATC 2 cut(s) 192, 364
BmuI ACTGGG 1 cut(s) 912
BpiI GAAGAC 4 cut(s) 428, 975, 981, 1014
BpmI CTGGAG 2 cut(s) 1092, 1107
Bpu14I TTCGAA 1 cut(s) 927
BpuEI CTTGAG 3 cut(s) 92, 467, 551
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 3 cut(s) 37, 364, 653
Bsc4I CCNNNNNNNGG 2 cut(s) 698, 1070
Bse1I ACTGG 1 cut(s) 907
Bse3DI GCAATG 1 cut(s) 423
BseBI CCWGG 1 cut(s) 654
BseDI CCNNGG 3 cut(s) 37, 364, 653
BseGI GGATG 2 cut(s) 925, 1024
BseLI CCNNNNNNNGG 2 cut(s) 698, 1070
BseMI GCAATG 1 cut(s) 423
BseMII CTCAG 2 cut(s) 432, 762
BseNI ACTGG 1 cut(s) 907
BseRI GAGGAG 1 cut(s) 458
BseX3I CGGCCG 1 cut(s) 54
BseXI GCAGC 2 cut(s) 238, 796
Bsh1236I CGCG 1 cut(s) 87
Bsh1285I CGRYCG 1 cut(s) 57
BshFI GGCC 2 cut(s) 56, 131
BshNI GGYRCC 1 cut(s) 41
BsiEI CGRYCG 1 cut(s) 57
BsiSI CCGG 2 cut(s) 53, 132
BslFI GGGAC 1 cut(s) 646
BslI CCNNNNNNNGG 2 cut(s) 698, 1070
BsmAI GTCTC 1 cut(s) 861
BsmFI GGGAC 1 cut(s) 646
BsmI GAATGC 1 cut(s) 139
BsnI GGCC 2 cut(s) 56, 131
Bsp119I TTCGAA 1 cut(s) 927
Bsp1286I GDGCHC 1 cut(s) 472
Bsp143I GATC 4 cut(s) 82, 675, 701, 774
BspACI CCGC 6 cut(s) 57, 60, 63, 66, 77, 887
BspANI GGCC 2 cut(s) 56, 131
BspCNI CTCAG 2 cut(s) 433, 763
BspFNI CGCG 1 cut(s) 87
BspLI GGNNCC 1 cut(s) 43
BspMAI CTGCAG 1 cut(s) 358
BspPI GGATC 3 cut(s) 90, 709, 769
BspT104I TTCGAA 1 cut(s) 927
BspT107I GGYRCC 1 cut(s) 41
BsrBI CCGCTC 1 cut(s) 68
BsrDI GCAATG 1 cut(s) 423
BsrI ACTGG 1 cut(s) 907
BssECI CCNNGG 3 cut(s) 37, 364, 653
BssMI GATC 4 cut(s) 82, 675, 701, 774
BssNI GRCGYC 1 cut(s) 42
BssT1I CCWWGG 1 cut(s) 364
Bst2UI CCWGG 1 cut(s) 654
Bst4CI ACNGT 2 cut(s) 172, 320
Bst6I CTCTTC 2 cut(s) 378, 1038
BstACI GRCGYC 1 cut(s) 42
BstBI TTCGAA 1 cut(s) 927
BstC8I GCNNGC 2 cut(s) 1115, 1133
BstDEI CTNAG 4 cut(s) 71, 441, 771, 1077
BstF5I GGATG 2 cut(s) 925, 1024
BstFNI CGCG 1 cut(s) 87
BstH2I RGCGCY 1 cut(s) 45
BstHHI GCGC 2 cut(s) 44, 89
BstKTI GATC 4 cut(s) 85, 678, 704, 777
BstMAI GTCTC 1 cut(s) 861
BstMBI GATC 4 cut(s) 82, 675, 701, 774
BstMCI CGRYCG 1 cut(s) 57
BstMWI GCNNNNNNNGC 5 cut(s) 62, 65, 74, 260, 1100
BstNI CCWGG 1 cut(s) 654
BstNSI RCATGY 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 652
BstSFI CTRYAG 1 cut(s) 354
BstUI CGCG 1 cut(s) 87
BstV1I GCAGC 2 cut(s) 238, 796
BstV2I GAAGAC 4 cut(s) 428, 975, 981, 1014
BstX2I RGATCY 2 cut(s) 675, 774
BstYI RGATCY 2 cut(s) 675, 774
BstZI CGGCCG 1 cut(s) 54
BsuI GTATCC 1 cut(s) 660
BsuRI GGCC 2 cut(s) 56, 131
BtsCI GGATG 2 cut(s) 925, 1024
BtsI GCAGTG 1 cut(s) 363
BtsIMutI CAGTG 2 cut(s) 363, 378
Cac8I GCNNGC 2 cut(s) 1115, 1133
CfoI GCGC 2 cut(s) 44, 89
Cfr13I GGNCC 1 cut(s) 361
CseI GACGC 1 cut(s) 1106
Csp6I GTAC 1 cut(s) 478
CviAII CATG 5 cut(s) 28, 215, 592, 884, 894
CviQI GTAC 1 cut(s) 478
DdeI CTNAG 4 cut(s) 71, 441, 771, 1077
DinI GGCGCC 1 cut(s) 43
DpnI GATC 4 cut(s) 84, 677, 703, 776
DpnII GATC 4 cut(s) 82, 675, 701, 774
EaeI YGGCCR 2 cut(s) 54, 129
EagI CGGCCG 1 cut(s) 54
Eam1104I CTCTTC 2 cut(s) 378, 1038
EarI CTCTTC 2 cut(s) 378, 1038
EclXI CGGCCG 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 364
Eco24I GRGCYC 1 cut(s) 472
Eco32I GATATC 1 cut(s) 490
Eco47I GGWCC 1 cut(s) 361
Eco52I CGGCCG 1 cut(s) 54
Eco57I CTGAAG 5 cut(s) 104, 402, 494, 753, 834
EcoRI GAATTC 1 cut(s) 923
EcoRII CCWGG 1 cut(s) 652
EcoRV GATATC 1 cut(s) 490
EcoT14I CCWWGG 1 cut(s) 364
EcoT38I GRGCYC 1 cut(s) 472
EgeI GGCGCC 1 cut(s) 43
EheI GGCGCC 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 364
FaeI CATG 5 cut(s) 31, 218, 595, 887, 897
FaqI GGGAC 1 cut(s) 646
FatI CATG 5 cut(s) 27, 214, 591, 883, 893
Fnu4HI GCNGC 7 cut(s) 57, 60, 63, 66, 252, 810, 1136
FokI GGATG 2 cut(s) 932, 1031
FriOI GRGCYC 1 cut(s) 472
Fsp4HI GCNGC 7 cut(s) 57, 60, 63, 66, 252, 810, 1136
GlaI GCGC 2 cut(s) 43, 88
GluI GCNGC 7 cut(s) 57, 60, 63, 66, 252, 810, 1136
GsuI CTGGAG 2 cut(s) 1092, 1107
HaeII RGCGCY 1 cut(s) 45
HaeIII GGCC 2 cut(s) 56, 131
HapII CCGG 2 cut(s) 53, 132
HgaI GACGC 1 cut(s) 1106
HhaI GCGC 2 cut(s) 44, 89
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 5 cut(s) 31, 218, 595, 887, 897
Hin6I GCGC 2 cut(s) 42, 87
HinP1I GCGC 2 cut(s) 42, 87
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HindIII AAGCTT 4 cut(s) 116, 527, 661, 745
HinfI GANTC 2 cut(s) 350, 522
HpaII CCGG 2 cut(s) 53, 132
HphI GGTGA 1 cut(s) 156
Hpy166II GTNNAC 3 cut(s) 316, 361, 900
Hpy188I TCNGA 7 cut(s) 34, 123, 145, 442, 454, 474, 831
Hpy188III TCNNGA 5 cut(s) 175, 574, 679, 770, 1124
Hpy8I GTNNAC 3 cut(s) 316, 361, 900
HpyAV CCTTC 6 cut(s) 59, 329, 458, 616, 1047, 1100
HpyCH4III ACNGT 2 cut(s) 172, 320
HpyCH4IV ACGT 2 cut(s) 181, 584
HpyCH4V TGCA 4 cut(s) 205, 254, 356, 1131
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 65, 74, 260, 1100
HpyF3I CTNAG 4 cut(s) 71, 441, 771, 1077
HpySE526I ACGT 2 cut(s) 181, 584
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 5 cut(s) 31, 218, 595, 887, 897
HspAI GCGC 2 cut(s) 42, 87
KasI GGCGCC 1 cut(s) 41
Kzo9I GATC 4 cut(s) 82, 675, 701, 774
LmnI GCTCC 3 cut(s) 835, 1073, 1100
Lsp1109I GCAGC 2 cut(s) 238, 796
LweI GCATC 2 cut(s) 192, 364
MaeII ACGT 2 cut(s) 181, 584
MaeIII GTNAC 2 cut(s) 162, 322
MalI GATC 4 cut(s) 84, 677, 703, 776
MbiI CCGCTC 1 cut(s) 68
MboI GATC 4 cut(s) 82, 675, 701, 774
MfeI CAATTG 1 cut(s) 627
MflI RGATCY 2 cut(s) 675, 774
MhlI GDGCHC 1 cut(s) 472
MluCI AATT 5 cut(s) 309, 565, 627, 709, 923
Mly113I GGCGCC 1 cut(s) 42
MmeI TCCRAC 2 cut(s) 168, 204
MroXI GAANNNNTTC 2 cut(s) 521, 819
MseI TTAA 3 cut(s) 99, 753, 915
MspI CCGG 2 cut(s) 53, 132
MspR9I CCNGG 1 cut(s) 654
MunI CAATTG 1 cut(s) 627
Mva1269I GAATGC 1 cut(s) 139
MvaI CCWGG 1 cut(s) 654
MvnI CGCG 1 cut(s) 87
MwoI GCNNNNNNNGC 5 cut(s) 62, 65, 74, 260, 1100
NarI GGCGCC 1 cut(s) 42
NdeII GATC 4 cut(s) 82, 675, 701, 774
NlaIII CATG 5 cut(s) 31, 218, 595, 887, 897
NlaIV GGNNCC 1 cut(s) 43
NmeAIII GCCGAG 1 cut(s) 18
NmuCI GTSAC 1 cut(s) 162
NspI RCATGY 1 cut(s) 31
NspV TTCGAA 1 cut(s) 927
PciI ACATGT 1 cut(s) 27
PctI GAATGC 1 cut(s) 139
PdmI GAANNNNTTC 2 cut(s) 521, 819
PfeI GAWTC 2 cut(s) 350, 522
PflMI CCANNNNNTGG 1 cut(s) 1070
PkrI GCNGC 7 cut(s) 58, 61, 64, 67, 253, 811, 1137
PluTI GGCGCC 1 cut(s) 45
PscI ACATGT 1 cut(s) 27
Psp6I CCWGG 1 cut(s) 652
PspGI CCWGG 1 cut(s) 652
PspN4I GGNNCC 1 cut(s) 43
PspPI GGNCC 1 cut(s) 361
PstI CTGCAG 1 cut(s) 358
PsuI RGATCY 2 cut(s) 675, 774
RsaI GTAC 1 cut(s) 479
RsaNI GTAC 1 cut(s) 478
SaqAI TTAA 3 cut(s) 99, 753, 915
SatI GCNGC 7 cut(s) 57, 60, 63, 66, 252, 810, 1136
Sau3AI GATC 4 cut(s) 82, 675, 701, 774
Sau96I GGNCC 1 cut(s) 361
ScrFI CCNGG 1 cut(s) 654
SduI GDGCHC 1 cut(s) 472
SfaNI GCATC 2 cut(s) 192, 364
SfcI CTRYAG 1 cut(s) 354
SfoI GGCGCC 1 cut(s) 43
SfuI TTCGAA 1 cut(s) 927
SinI GGWCC 1 cut(s) 361
SmlI CTYRAG 3 cut(s) 107, 482, 530
SmoI CTYRAG 3 cut(s) 107, 482, 530
Sse9I AATT 5 cut(s) 309, 565, 627, 709, 923
SsiI CCGC 6 cut(s) 57, 60, 63, 66, 77, 887
SspDI GGCGCC 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 652
StyI CCWWGG 1 cut(s) 364
TaaI ACNGT 2 cut(s) 172, 320
TaiI ACGT 2 cut(s) 184, 587
TaqI TCGA 2 cut(s) 24, 927
TasI AATT 5 cut(s) 309, 565, 627, 709, 923
TauI GCSGC 4 cut(s) 59, 62, 65, 68
TfiI GAWTC 2 cut(s) 350, 522
Tru1I TTAA 3 cut(s) 99, 753, 915
Tru9I TTAA 3 cut(s) 99, 753, 915
TscAI CASTG 2 cut(s) 363, 385
TseFI GTSAC 1 cut(s) 162
TseI GCWGC 3 cut(s) 251, 809, 1135
Tsp45I GTSAC 1 cut(s) 162
TspGWI ACGGA 1 cut(s) 650
TspRI CASTG 2 cut(s) 363, 385
Van91I CCANNNNNTGG 1 cut(s) 1070
VpaK11BI GGWCC 1 cut(s) 361
XapI RAATTY 3 cut(s) 565, 709, 923
XceI RCATGY 1 cut(s) 31
XmnI GAANNNNTTC 2 cut(s) 521, 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.