Rroxscaffold_1G00016790

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000381
Physical Location & Seq
Reverse (-)
20859020 .. 20867659
8640 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00016790.1

Sequence Viewer

Length: 807 bp
ATGAGCAAAGACATGGATAACATCAATTTAGCTGGCCAGCATACCAAGGACATCCTTGAGAGCCTTCCTCAGAAGGTCAGAAAGCGGGTTGAGGCCATTAGAGAAATTGAGAACCAACATCATGAATTAGAGGCAGAGTTTCTCAAGGAGAGAGCTTTACTTGAAGCTAAGTATCATAAATTATATCAACCTCTCTACAGCAAGCGATACTTGATTGTGAATGGTGTTGTTGAAGCTGAAGAAGTTGCCACTGAAGCAGCAGCAGATCAAGAGGACAAAACTGCAAAAGAGAGAGGAGTGCCTGATTTCTGGCTCAATGCATTGAAGAACAATGAATTGCTAGCCAAGGAGATCACTGAGCATGATGAAGGAGCTCTTAAATATCTGAGAGACATCAAGTGGTTTAAGATACATAATTCCAAGGGGTTCAAACTTCAGTTCTACTTTGACACCAATCCATTTTTCAAAAACTCTGTTTTGACGAAGACATATCACATGATTGATGAAGATGAACCAAATAACGTAGCAGGGACGGAGATTGAATGGTATCCAGCAAAATGCCTGACACAGAAGATTCTTAAGAAGAAGCGATCGAAGAATTCTAAGCCTCTGACTAAAACTGAAAATTGTAAAAGTTTCTTCAATTTCTTTAGTCCACCTCAAGTCTCCAAGGACGATGTAATTATTGATGAATTTGCTGCCGAGGAACTCAAAAACCAGAAGAAACAAGACTATGATGTCGGGTCAACCATTTGTTATAAGATCATCCCACATGCAGTTTCGTGGTTTACTGGAGAAGCTTTTTAG

Protein Analysis

268

Amino Acids

31.24

Weight (kDa)

6.28

Isoelectric Point (pI)

37.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 28 - 266 7.7e-76 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000381)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 759
AasI GACNNNNNNGTC 1 cut(s) 737
AciI CCGC 1 cut(s) 85
AcoI YGGCCR 1 cut(s) 34
AcsI RAATTY 2 cut(s) 598, 692
AcuI CTGAAG 3 cut(s) 258, 273, 419
AflII CTTAAG 1 cut(s) 578
AgsI TTSAA 7 cut(s) 164, 233, 325, 430, 466, 542, 643
AjuI GAANNNNNNNTTGG 2 cut(s) 446, 478
AluBI AGCT 6 cut(s) 32, 155, 167, 236, 374, 800
AluI AGCT 6 cut(s) 32, 155, 167, 236, 374, 800
Alw21I GWGCWC 1 cut(s) 376
Alw26I GTCTC 2 cut(s) 384, 670
AoxI GGCC 2 cut(s) 34, 93
ApeKI GCWGC 3 cut(s) 257, 260, 698
ApoI RAATTY 2 cut(s) 598, 692
AsuNHI GCTAGC 1 cut(s) 340
BalI TGGCCA 1 cut(s) 36
BanII GRGCYC 1 cut(s) 376
BbsI GAAGAC 1 cut(s) 491
Bbv12I GWGCWC 1 cut(s) 376
BbvI GCAGC 3 cut(s) 269, 272, 685
BciVI GTATCC 1 cut(s) 558
BcoDI GTCTC 2 cut(s) 384, 670
BfaI CTAG 1 cut(s) 341
BfmI CTRYAG 1 cut(s) 196
BfrI CTTAAG 1 cut(s) 578
BfuI GTATCC 1 cut(s) 558
BisI GCNGC 3 cut(s) 258, 261, 699
BlsI GCNGC 3 cut(s) 259, 262, 700
BmtI GCTAGC 1 cut(s) 344
BpiI GAAGAC 1 cut(s) 491
BplI GAGNNNNNCTC 2 cut(s) 52, 84
BpuEI CTTGAG 3 cut(s) 77, 128, 645
BsaJI CCNNGG 5 cut(s) 45, 345, 420, 669, 702
Bse1I ACTGG 1 cut(s) 796
BseDI CCNNGG 5 cut(s) 45, 345, 420, 669, 702
BseGI GGATG 2 cut(s) 51, 765
BseMII CTCAG 3 cut(s) 83, 348, 377
BseNI ACTGG 1 cut(s) 796
BseRI GAGGAG 1 cut(s) 309
BseXI GCAGC 3 cut(s) 269, 272, 685
Bsh1285I CGRYCG 1 cut(s) 593
BshFI GGCC 2 cut(s) 36, 95
BsiEI CGRYCG 1 cut(s) 593
BsiHKAI GWGCWC 1 cut(s) 376
BslFI GGGAC 1 cut(s) 544
BsmAI GTCTC 2 cut(s) 384, 670
BsmFI GGGAC 1 cut(s) 544
BsnI GGCC 2 cut(s) 36, 95
Bsp1286I GDGCHC 1 cut(s) 376
Bsp143I GATC 4 cut(s) 265, 351, 590, 762
BspACI CCGC 1 cut(s) 85
BspANI GGCC 2 cut(s) 36, 95
BspCNI CTCAG 3 cut(s) 82, 349, 378
BspHI TCATGA 1 cut(s) 121
BspOI GCTAGC 1 cut(s) 344
BspTI CTTAAG 1 cut(s) 578
BsrI ACTGG 1 cut(s) 796
BssECI CCNNGG 5 cut(s) 45, 345, 420, 669, 702
BssMI GATC 4 cut(s) 265, 351, 590, 762
BssT1I CCWWGG 4 cut(s) 45, 345, 420, 669
BstAFI CTTAAG 1 cut(s) 578
BstC8I GCNNGC 4 cut(s) 34, 38, 203, 342
BstDEI CTNAG 5 cut(s) 69, 168, 357, 386, 603
BstF5I GGATG 2 cut(s) 51, 765
BstKTI GATC 4 cut(s) 268, 354, 593, 765
BstMAI GTCTC 2 cut(s) 384, 670
BstMBI GATC 4 cut(s) 265, 351, 590, 762
BstMCI CGRYCG 1 cut(s) 593
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstNSI RCATGY 1 cut(s) 776
BstSFI CTRYAG 1 cut(s) 196
BstV1I GCAGC 3 cut(s) 269, 272, 685
BstV2I GAAGAC 1 cut(s) 491
BsuI GTATCC 1 cut(s) 558
BsuRI GGCC 2 cut(s) 36, 95
BtsCI GGATG 2 cut(s) 51, 765
BtsIMutI CAGTG 2 cut(s) 249, 354
Cac8I GCNNGC 4 cut(s) 34, 38, 203, 342
CciI TCATGA 1 cut(s) 121
CviAII CATG 5 cut(s) 13, 122, 362, 496, 773
DdeI CTNAG 5 cut(s) 69, 168, 357, 386, 603
DpnI GATC 4 cut(s) 267, 353, 592, 764
DpnII GATC 4 cut(s) 265, 351, 590, 762
DrdI GACNNNNNNGTC 1 cut(s) 737
DseDI GACNNNNNNGTC 1 cut(s) 737
EaeI YGGCCR 1 cut(s) 34
Ecl136II GAGCTC 1 cut(s) 374
Eco130I CCWWGG 4 cut(s) 45, 345, 420, 669
Eco24I GRGCYC 1 cut(s) 376
Eco53kI GAGCTC 1 cut(s) 374
Eco57I CTGAAG 3 cut(s) 258, 273, 419
EcoICRI GAGCTC 1 cut(s) 374
EcoRI GAATTC 1 cut(s) 598
EcoT14I CCWWGG 4 cut(s) 45, 345, 420, 669
EcoT22I ATGCAT 1 cut(s) 322
EcoT38I GRGCYC 1 cut(s) 376
ErhI CCWWGG 4 cut(s) 45, 345, 420, 669
FaeI CATG 5 cut(s) 16, 125, 365, 499, 776
FalI AAGNNNNNCTT 4 cut(s) 194, 226, 360, 392
FaqI GGGAC 1 cut(s) 544
FatI CATG 5 cut(s) 12, 121, 361, 495, 772
FauI CCCGC 1 cut(s) 78
Fnu4HI GCNGC 3 cut(s) 258, 261, 699
FokI GGATG 2 cut(s) 38, 752
FriOI GRGCYC 1 cut(s) 376
Fsp4HI GCNGC 3 cut(s) 258, 261, 699
FspBI CTAG 1 cut(s) 341
GluI GCNGC 3 cut(s) 258, 261, 699
HaeIII GGCC 2 cut(s) 36, 95
Hin1II CATG 5 cut(s) 16, 125, 365, 499, 776
HincII GTYRAC 1 cut(s) 747
HindII GTYRAC 1 cut(s) 747
HindIII AAGCTT 1 cut(s) 798
HinfI GANTC 1 cut(s) 574
Hpy166II GTNNAC 3 cut(s) 656, 747, 789
Hpy188I TCNGA 4 cut(s) 72, 80, 387, 612
Hpy188III TCNNGA 2 cut(s) 122, 269
Hpy8I GTNNAC 3 cut(s) 656, 747, 789
HpyAV CCTTC 3 cut(s) 67, 74, 362
HpyCH4IV ACGT 1 cut(s) 522
HpyCH4V TGCA 3 cut(s) 284, 320, 776
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 5 cut(s) 69, 168, 357, 386, 603
HpySE526I ACGT 1 cut(s) 522
Hsp92II CATG 5 cut(s) 16, 125, 365, 499, 776
Kzo9I GATC 4 cut(s) 265, 351, 590, 762
LmnI GCTCC 1 cut(s) 371
LpnPI CCDG 9 cut(s) 18, 50, 295, 315, 513, 564, 575, 731, 777
Lsp1109I GCAGC 3 cut(s) 269, 272, 685
MaeI CTAG 1 cut(s) 341
MaeII ACGT 1 cut(s) 522
MalI GATC 4 cut(s) 267, 353, 592, 764
MboI GATC 4 cut(s) 265, 351, 590, 762
MboII GAAGA 9 cut(s) 251, 337, 496, 518, 583, 595, 607, 631, 733
MhlI GDGCHC 1 cut(s) 376
MlsI TGGCCA 1 cut(s) 36
MluNI TGGCCA 1 cut(s) 36
MnlI CCTC 9 cut(s) 78, 85, 124, 201, 265, 287, 618, 669, 697
Mox20I TGGCCA 1 cut(s) 36
Mph1103I ATGCAT 1 cut(s) 322
MscI TGGCCA 1 cut(s) 36
MseI TTAA 3 cut(s) 378, 405, 579
Msp20I TGGCCA 1 cut(s) 36
MspCI CTTAAG 1 cut(s) 578
MwoI GCNNNNNNNGC 1 cut(s) 254
NdeII GATC 4 cut(s) 265, 351, 590, 762
NheI GCTAGC 1 cut(s) 340
NlaIII CATG 5 cut(s) 16, 125, 365, 499, 776
NmeAIII GCCGAG 1 cut(s) 727
NsiI ATGCAT 1 cut(s) 322
NspI RCATGY 1 cut(s) 776
PagI TCATGA 1 cut(s) 121
PfeI GAWTC 1 cut(s) 574
PkrI GCNGC 3 cut(s) 259, 262, 700
Ple19I CGATCG 1 cut(s) 593
PsiI TTATAA 1 cut(s) 759
Psp124BI GAGCTC 1 cut(s) 376
PvuI CGATCG 1 cut(s) 593
SacI GAGCTC 1 cut(s) 376
SaqAI TTAA 3 cut(s) 378, 405, 579
SatI GCNGC 3 cut(s) 258, 261, 699
Sau3AI GATC 4 cut(s) 265, 351, 590, 762
SduI GDGCHC 1 cut(s) 376
SfcI CTRYAG 1 cut(s) 196
SmlI CTYRAG 4 cut(s) 56, 143, 578, 660
SmoI CTYRAG 4 cut(s) 56, 143, 578, 660
SsiI CCGC 1 cut(s) 85
SspMI CTAG 1 cut(s) 341
SstI GAGCTC 1 cut(s) 376
StyI CCWWGG 4 cut(s) 45, 345, 420, 669
TaiI ACGT 1 cut(s) 525
TaqI TCGA 1 cut(s) 593
TfiI GAWTC 1 cut(s) 574
Tru1I TTAA 3 cut(s) 378, 405, 579
Tru9I TTAA 3 cut(s) 378, 405, 579
TscAI CASTG 2 cut(s) 256, 361
TseI GCWGC 3 cut(s) 257, 260, 698
TspDTI ATGAA 6 cut(s) 138, 348, 381, 519, 525, 705
TspGWI ACGGA 1 cut(s) 548
TspRI CASTG 2 cut(s) 256, 361
Vha464I CTTAAG 1 cut(s) 578
XapI RAATTY 2 cut(s) 598, 692
XceI RCATGY 1 cut(s) 776
XspI CTAG 1 cut(s) 341
Zsp2I ATGCAT 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.