Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Reverse (-)

61240329 .. 61242971

Gene Structure 2643 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51365

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGCTTCTTCTATGGTCCTATTTTTGTGTTGATAAACTTTTCAATCACTCTGTTTTTCCTTTTTCTTTTTTCAAGATTAAGTCTCGGATTACACCCAAGATAGTGAAGCGCGTTCATGTTTTGAGACAGATAGAGGGGCAGCATAAGAAGCTGGAACAACAATTTTTTGAGGACAGAGCTGCACTGGTAGATAAATACCATCAGCTTTACAAACCTCTCTACGAAAAGAGATATGAGATTGTTAATGGTATCACTGAAGTGGAAGGAGTGAAAACTCCAGACCAAGGACAAGAAGCCACTGAAGAGAAAGGAGTACCTAACTTTTGGCTGTCCGCACTGAAGAATAATAAGGAACTTCTGATAATGGAGCTTGACGAACACGCTCTCCAGTTTCTCAAAGATATCAGGTGGTGCAGGATACATGATCCTAAAGGGTTTAGGCTGGAATTCTTATTTGATCCTAATCCTTACTTTCGAAACTCCGTCCTGACAAAAACATATTACATGATTGAAGAACATGAGCCCATATGGAGCAAAGAAATCGGGACGGAGATTGATTGGTATCCCGGGCAAAGCTTGACAATCAGTCCAAGAAAGGACCCAAAGAATGCCAAGTCCATGACTGCAGCTGATATTTGTTACAGCTTTTTTACGTTCTTCAAACCTCCCCAACATGATGATTATACCGGGGCAGATATGGTTTCTATGTTCAAGACTAGGATAGAAAACGACCGTGAAATGGGCTTAACAATTCGAGACAAGATCATCCCTTACGCGGTGTCATGGTTCACTGGGGAAGCTGTTAAAGGATACGAGTTTGAAGATGACGATGATAGTGAAGACGATGATGACAGTGACTATTATTTTTACTCTGATAGAGATGATGAGGACGAGGAGGGTGCTGCTGCTGAAGACAAAAATAAAGAGGAGGAAGATGGCAAAAGAAAGGAATTAAGTAGATGGACTAATGCTGAGAAAGCAATGGCTGTGCTAACGCTGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

334

Amino Acids

39.51

Weight (kDa)

4.95

Isoelectric Point (pI)

39.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	36 - 266	1.9e-63	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	111, 776
AciI	CCGC	2 cut(s)	333, 776
AclWI	GGATC	2 cut(s)	419, 452
AcsI	RAATTY	1 cut(s)	446
AcuI	CTGAAG	4 cut(s)	276, 321, 359, 930
AfaI	GTAC	1 cut(s)	315
AfiI	CCNNNNNNNGG	3 cut(s)	284, 739, 775
AgsI	TTSAA	6 cut(s)	43, 73, 512, 661, 712, 821
AhdI	GACNNNNNGTC	1 cut(s)	585
AleI	CACNNNNGTG	1 cut(s)	257
AloI	GAACNNNNNNTCC	2 cut(s)	369, 401
AluBI	AGCT	8 cut(s)	151, 179, 205, 370, 576, 629, 645, 800
AluI	AGCT	8 cut(s)	151, 179, 205, 370, 576, 629, 645, 800
Alw26I	GTCTC	3 cut(s)	87, 118, 750
AlwI	GGATC	2 cut(s)	419, 452
Ama87I	CYCGRG	1 cut(s)	566
ApeKI	GCWGC	6 cut(s)	139, 179, 626, 902, 905, 997
ApoI	RAATTY	1 cut(s)	446
AspLEI	GCGC	1 cut(s)	111
AspS9I	GGNCC	2 cut(s)	15, 598
AsuC2I	CCSGG	3 cut(s)	567, 568, 688
AsuII	TTCGAA	1 cut(s)	475
AvaI	CYCGRG	1 cut(s)	566
AvaII	GGWCC	2 cut(s)	15, 598
BanII	GRGCYC	1 cut(s)	525
BbsI	GAAGAC	2 cut(s)	846, 918
BbvI	GCAGC	6 cut(s)	151, 166, 638, 889, 892, 984
BccI	CCATC	3 cut(s)	207, 929, 954
BcgI	CGANNNNNNTGC	4 cut(s)	523, 557, 881, 915
BciVI	GTATCC	3 cut(s)	411, 573, 803
BcnI	CCSGG	3 cut(s)	567, 568, 688
BcoDI	GTCTC	3 cut(s)	87, 118, 750
BfaI	CTAG	1 cut(s)	717
BfmI	CTRYAG	1 cut(s)	624
BfuI	GTATCC	3 cut(s)	411, 573, 803
BisI	GCNGC	6 cut(s)	140, 180, 627, 903, 906, 998
BlsI	GCNGC	6 cut(s)	141, 181, 628, 904, 907, 999
Bme1390I	CCNGG	3 cut(s)	567, 568, 688
Bme18I	GGWCC	2 cut(s)	15, 598
BmeRI	GACNNNNNGTC	1 cut(s)	585
BmeT110I	CYCGRG	1 cut(s)	566
BmgT120I	GGNCC	2 cut(s)	15, 598
BmiI	GGNNCC	1 cut(s)	600
BmrFI	CCNGG	3 cut(s)	567, 568, 688
BmrI	ACTGGG	1 cut(s)	801
BmuI	ACTGGG	1 cut(s)	801
BpiI	GAAGAC	2 cut(s)	846, 918
BpmI	CTGGAG	2 cut(s)	261, 371
Bpu14I	TTCGAA	1 cut(s)	475
BpuMI	CCSGG	3 cut(s)	567, 568, 688
BsaBI	GATNNNNATC	2 cut(s)	462, 561
BsaJI	CCNNGG	3 cut(s)	283, 566, 687
BsaXI	ACNNNNNCTCC	2 cut(s)	369, 399
Bsc4I	CCNNNNNNNGG	3 cut(s)	284, 739, 775
Bse1I	ACTGG	3 cut(s)	189, 388, 796
Bse3DI	GCAATG	1 cut(s)	987
Bse8I	GATNNNNATC	2 cut(s)	462, 561
BseDI	CCNNGG	3 cut(s)	283, 566, 687
BseGI	GGATG	1 cut(s)	765
BseJI	GATNNNNATC	2 cut(s)	462, 561
BseLI	CCNNNNNNNGG	3 cut(s)	284, 739, 775
BseMI	GCAATG	1 cut(s)	987
BseMII	CTCAG	1 cut(s)	963
BseNI	ACTGG	3 cut(s)	189, 388, 796
BseRI	GAGGAG	2 cut(s)	908, 941
BseXI	GCAGC	6 cut(s)	151, 166, 638, 889, 892, 984
BsgI	GTGCAG	2 cut(s)	165, 433
Bsh1236I	CGCG	2 cut(s)	111, 776
Bsh1285I	CGRYCG	1 cut(s)	733
BsiEI	CGRYCG	1 cut(s)	733
BsiHKCI	CYCGRG	1 cut(s)	566
BsiSI	CCGG	2 cut(s)	567, 687
BslFI	GGGAC	1 cut(s)	559
BslI	CCNNNNNNNGG	3 cut(s)	284, 739, 775
BsmAI	GTCTC	3 cut(s)	87, 118, 750
BsmFI	GGGAC	1 cut(s)	559
BsmI	GAATGC	1 cut(s)	613
BsoBI	CYCGRG	1 cut(s)	566
Bsp119I	TTCGAA	1 cut(s)	475
Bsp1286I	GDGCHC	1 cut(s)	525
Bsp143I	GATC	3 cut(s)	424, 457, 762
BspACI	CCGC	2 cut(s)	333, 776
BspCNI	CTCAG	1 cut(s)	964
BspFNI	CGCG	2 cut(s)	111, 776
BspLI	GGNNCC	1 cut(s)	600
BspMAI	CTGCAG	1 cut(s)	628
BspPI	GGATC	2 cut(s)	419, 452
BspT104I	TTCGAA	1 cut(s)	475
BsrDI	GCAATG	1 cut(s)	987
BsrI	ACTGG	3 cut(s)	189, 388, 796
BssECI	CCNNGG	3 cut(s)	283, 566, 687
BssMI	GATC	3 cut(s)	424, 457, 762
BssT1I	CCWWGG	1 cut(s)	283
Bst4CI	ACNGT	2 cut(s)	734, 854
Bst6I	CTCTTC	1 cut(s)	297
BstBI	TTCGAA	1 cut(s)	475
BstDEI	CTNAG	1 cut(s)	972
BstF5I	GGATG	1 cut(s)	765
BstFNI	CGCG	2 cut(s)	111, 776
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	3 cut(s)	427, 460, 765
BstMAI	GTCTC	3 cut(s)	87, 118, 750
BstMBI	GATC	3 cut(s)	424, 457, 762
BstMCI	CGRYCG	1 cut(s)	733
BstMWI	GCNNNNNNNGC	3 cut(s)	148, 977, 997
BstSCI	CCNGG	3 cut(s)	565, 566, 686
BstSFI	CTRYAG	1 cut(s)	624
BstUI	CGCG	2 cut(s)	111, 776
BstV1I	GCAGC	6 cut(s)	151, 166, 638, 889, 892, 984
BstV2I	GAAGAC	2 cut(s)	846, 918
BsuI	GTATCC	3 cut(s)	411, 573, 803
BtsCI	GGATG	1 cut(s)	765
BtsIMutI	CAGTG	6 cut(s)	182, 252, 297, 335, 789, 859
CfoI	GCGC	1 cut(s)	111
Cfr13I	GGNCC	2 cut(s)	15, 598
Cfr9I	CCCGGG	1 cut(s)	566
Csp6I	GTAC	1 cut(s)	314
CviAII	CATG	7 cut(s)	116, 422, 505, 518, 619, 674, 783
CviQI	GTAC	1 cut(s)	314
DdeI	CTNAG	1 cut(s)	972
DpnI	GATC	3 cut(s)	426, 459, 764
DpnII	GATC	3 cut(s)	424, 457, 762
DriI	GACNNNNNGTC	1 cut(s)	585
Eam1104I	CTCTTC	1 cut(s)	297
Eam1105I	GACNNNNNGTC	1 cut(s)	585
EarI	CTCTTC	1 cut(s)	297
Eco130I	CCWWGG	1 cut(s)	283
Eco24I	GRGCYC	1 cut(s)	525
Eco32I	GATATC	1 cut(s)	403
Eco47I	GGWCC	2 cut(s)	15, 598
Eco57I	CTGAAG	4 cut(s)	276, 321, 359, 930
Eco88I	CYCGRG	1 cut(s)	566
EcoO109I	RGGNCCY	1 cut(s)	598
EcoRI	GAATTC	1 cut(s)	446
EcoRV	GATATC	1 cut(s)	403
EcoT14I	CCWWGG	1 cut(s)	283
EcoT38I	GRGCYC	1 cut(s)	525
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	7 cut(s)	119, 425, 508, 521, 622, 677, 786
FaqI	GGGAC	1 cut(s)	559
FatI	CATG	7 cut(s)	115, 421, 504, 517, 618, 673, 782
FauNDI	CATATG	1 cut(s)	527
Fnu4HI	GCNGC	6 cut(s)	140, 180, 627, 903, 906, 998
FokI	GGATG	1 cut(s)	752
FriOI	GRGCYC	1 cut(s)	525
Fsp4HI	GCNGC	6 cut(s)	140, 180, 627, 903, 906, 998
FspBI	CTAG	1 cut(s)	717
GlaI	GCGC	1 cut(s)	110
GluI	GCNGC	6 cut(s)	140, 180, 627, 903, 906, 998
GsuI	CTGGAG	2 cut(s)	261, 371
HapII	CCGG	2 cut(s)	567, 687
HhaI	GCGC	1 cut(s)	111
Hin1II	CATG	7 cut(s)	119, 425, 508, 521, 622, 677, 786
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HindIII	AAGCTT	1 cut(s)	574
HpaII	CCGG	2 cut(s)	567, 687
Hpy166II	GTNNAC	1 cut(s)	789
Hpy188I	TCNGA	3 cut(s)	87, 360, 874
Hpy188III	TCNNGA	6 cut(s)	73, 278, 487, 544, 712, 755
Hpy8I	GTNNAC	1 cut(s)	789
HpyAV	CCTTC	1 cut(s)	257
HpyCH4III	ACNGT	2 cut(s)	734, 854
HpyCH4IV	ACGT	1 cut(s)	653
HpyCH4V	TGCA	4 cut(s)	182, 414, 626, 1000
HpyF10VI	GCNNNNNNNGC	3 cut(s)	148, 977, 997
HpyF3I	CTNAG	1 cut(s)	972
HpySE526I	ACGT	1 cut(s)	653
Hsp92II	CATG	7 cut(s)	119, 425, 508, 521, 622, 677, 786
HspAI	GCGC	1 cut(s)	109
Kzo9I	GATC	3 cut(s)	424, 457, 762
LmnI	GCTCC	2 cut(s)	367, 531
Lsp1109I	GCAGC	6 cut(s)	151, 166, 638, 889, 892, 984
MaeI	CTAG	1 cut(s)	717
MaeII	ACGT	1 cut(s)	653
MaeIII	GTNAC	2 cut(s)	638, 854
MalI	GATC	3 cut(s)	426, 459, 764
MboI	GATC	3 cut(s)	424, 457, 762
MboII	GAAGA	8 cut(s)	314, 352, 524, 649, 833, 851, 923, 944
MhlI	GDGCHC	1 cut(s)	525
MluCI	AATT	4 cut(s)	161, 446, 750, 950
MnlI	CCTC	9 cut(s)	127, 163, 225, 675, 880, 886, 889, 919, 922
MseI	TTAA	5 cut(s)	78, 243, 746, 804, 953
MslI	CAYNNNNRTG	1 cut(s)	257
MspA1I	CMGCKG	1 cut(s)	629
MspI	CCGG	2 cut(s)	567, 687
MspR9I	CCNGG	3 cut(s)	567, 568, 688
Mva1269I	GAATGC	1 cut(s)	613
MvnI	CGCG	2 cut(s)	111, 776
MwoI	GCNNNNNNNGC	3 cut(s)	148, 977, 997
NciI	CCSGG	3 cut(s)	567, 568, 688
NdeI	CATATG	1 cut(s)	527
NdeII	GATC	3 cut(s)	424, 457, 762
NlaIII	CATG	7 cut(s)	119, 425, 508, 521, 622, 677, 786
NlaIV	GGNNCC	1 cut(s)	600
NmuCI	GTSAC	1 cut(s)	854
NspV	TTCGAA	1 cut(s)	475
OliI	CACNNNNGTG	1 cut(s)	257
PctI	GAATGC	1 cut(s)	613
PkrI	GCNGC	6 cut(s)	141, 181, 628, 904, 907, 999
PpuMI	RGGWCCY	1 cut(s)	598
Psp5II	RGGWCCY	1 cut(s)	598
PspN4I	GGNNCC	1 cut(s)	600
PspPI	GGNCC	2 cut(s)	15, 598
PspPPI	RGGWCCY	1 cut(s)	598
PstI	CTGCAG	1 cut(s)	628
PvuII	CAGCTG	1 cut(s)	629
RsaI	GTAC	1 cut(s)	315
RsaNI	GTAC	1 cut(s)	314
RseI	CAYNNNNRTG	1 cut(s)	257
SaqAI	TTAA	5 cut(s)	78, 243, 746, 804, 953
SatI	GCNGC	6 cut(s)	140, 180, 627, 903, 906, 998
Sau3AI	GATC	3 cut(s)	424, 457, 762
Sau96I	GGNCC	2 cut(s)	15, 598
ScrFI	CCNGG	3 cut(s)	567, 568, 688
SduI	GDGCHC	1 cut(s)	525
SfcI	CTRYAG	1 cut(s)	624
SfuI	TTCGAA	1 cut(s)	475
SinI	GGWCC	2 cut(s)	15, 598
SmaI	CCCGGG	1 cut(s)	568
SmiMI	CAYNNNNRTG	1 cut(s)	257
Sse9I	AATT	4 cut(s)	161, 446, 750, 950
SsiI	CCGC	2 cut(s)	333, 776
SspMI	CTAG	1 cut(s)	717
StyD4I	CCNGG	3 cut(s)	565, 566, 686
StyI	CCWWGG	1 cut(s)	283
TaaI	ACNGT	2 cut(s)	734, 854
TaiI	ACGT	1 cut(s)	656
TaqI	TCGA	2 cut(s)	475, 754
TasI	AATT	4 cut(s)	161, 446, 750, 950
Tru1I	TTAA	5 cut(s)	78, 243, 746, 804, 953
Tru9I	TTAA	5 cut(s)	78, 243, 746, 804, 953
TscAI	CASTG	6 cut(s)	189, 259, 304, 342, 796, 859
TseFI	GTSAC	1 cut(s)	854
TseI	GCWGC	6 cut(s)	139, 179, 626, 902, 905, 997
Tsp45I	GTSAC	1 cut(s)	854
TspDTI	ATGAA	1 cut(s)	104
TspGWI	ACGGA	2 cut(s)	472, 563
TspMI	CCCGGG	1 cut(s)	566
TspRI	CASTG	6 cut(s)	189, 259, 304, 342, 796, 859
VpaK11BI	GGWCC	2 cut(s)	15, 598
XapI	RAATTY	1 cut(s)	446
XmaI	CCCGGG	1 cut(s)	566
XspI	CTAG	1 cut(s)	717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.