Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000239.1

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Reverse (-)

11028 .. 11753

Gene Structure 726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000239.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atgtgtttccagaaacgcattgaggctctaagaaagatacaggatcaggagcatgaccagctagaaaagaacttttctgcagagaaaactgaatgggaagcaaaattccgtgaacgctatgaacctctctacacagtgagatatgagattgtgattggtttaactgaagttggaggagtaaccaatgaagcttcaatcgatcaagaaggagagaaaataaaaaacctagagagagccgcttctacagttgacaggaaaaaccaaatcctgtccggcggcacgccctcgtggtggcgtcgccggacgggtcagagtggacccaatgtcccgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

110

Amino Acids

12.77

Weight (kDa)

6.61

Isoelectric Point (pI)

34.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	237, 276
AclWI	GGATC	1 cut(s)	51
AcsI	RAATTY	1 cut(s)	104
AcuI	CTGAAG	1 cut(s)	186
AcyI	GRCGYC	1 cut(s)	295
AfiI	CCNNNNNNNGG	1 cut(s)	291
AgsI	TTSAA	1 cut(s)	195
AhdI	GACNNNNNGTC	1 cut(s)	323
AluBI	AGCT	2 cut(s)	61, 191
AluI	AGCT	2 cut(s)	61, 191
AlwI	GGATC	1 cut(s)	51
ApoI	RAATTY	1 cut(s)	104
AspS9I	GGNCC	1 cut(s)	317
AvaII	GGWCC	1 cut(s)	317
BauI	CACGAG	1 cut(s)	286
BfaI	CTAG	2 cut(s)	62, 227
BfmI	CTRYAG	2 cut(s)	78, 243
BisI	GCNGC	2 cut(s)	237, 277
BlsI	GCNGC	2 cut(s)	238, 278
Bme18I	GGWCC	1 cut(s)	317
BmeRI	GACNNNNNGTC	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	317
BmiI	GGNNCC	1 cut(s)	319
Bsa29I	ATCGAT	1 cut(s)	198
BsaHI	GRCGYC	1 cut(s)	295
Bsc4I	CCNNNNNNNGG	1 cut(s)	291
BseCI	ATCGAT	1 cut(s)	198
BseLI	CCNNNNNNNGG	1 cut(s)	291
BseRI	GAGGAG	1 cut(s)	189
BshVI	ATCGAT	1 cut(s)	198
BsiSI	CCGG	2 cut(s)	273, 301
BslFI	GGGAC	1 cut(s)	311
BslI	CCNNNNNNNGG	1 cut(s)	291
BsmFI	GGGAC	1 cut(s)	311
Bsp143I	GATC	2 cut(s)	43, 199
BspACI	CCGC	2 cut(s)	237, 276
BspDI	ATCGAT	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	319
BspMAI	CTGCAG	1 cut(s)	82
BspPI	GGATC	1 cut(s)	51
BssMI	GATC	2 cut(s)	43, 199
BssNI	GRCGYC	1 cut(s)	295
BssSI	CACGAG	1 cut(s)	286
Bst2BI	CACGAG	1 cut(s)	286
Bst4CI	ACNGT	2 cut(s)	136, 247
BstACI	GRCGYC	1 cut(s)	295
BstC8I	GCNNGC	1 cut(s)	281
BstDEI	CTNAG	1 cut(s)	29
BstKTI	GATC	2 cut(s)	46, 202
BstMBI	GATC	2 cut(s)	43, 199
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstSFI	CTRYAG	2 cut(s)	78, 243
Bsu15I	ATCGAT	1 cut(s)	198
BsuTUI	ATCGAT	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	1 cut(s)	281
Cfr13I	GGNCC	1 cut(s)	317
ClaI	ATCGAT	1 cut(s)	198
CseI	GACGC	1 cut(s)	284
CviAII	CATG	1 cut(s)	53
CviJI	RGCY	4 cut(s)	26, 61, 191, 236
CviKI_1	RGCY	4 cut(s)	26, 61, 191, 236
DdeI	CTNAG	1 cut(s)	29
DpnI	GATC	2 cut(s)	45, 201
DpnII	GATC	2 cut(s)	43, 199
DriI	GACNNNNNGTC	1 cut(s)	323
Eam1105I	GACNNNNNGTC	1 cut(s)	323
Eco47I	GGWCC	1 cut(s)	317
Eco57I	CTGAAG	1 cut(s)	186
FaeI	CATG	1 cut(s)	56
FaiI	YATR	3 cut(s)	54, 120, 144
FaqI	GGGAC	1 cut(s)	311
FatI	CATG	1 cut(s)	52
Fnu4HI	GCNGC	2 cut(s)	237, 277
Fsp4HI	GCNGC	2 cut(s)	237, 277
FspBI	CTAG	2 cut(s)	62, 227
GluI	GCNGC	2 cut(s)	237, 277
HapII	CCGG	2 cut(s)	273, 301
HgaI	GACGC	1 cut(s)	284
Hin1I	GRCGYC	1 cut(s)	295
Hin1II	CATG	1 cut(s)	56
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HindIII	AAGCTT	1 cut(s)	189
HpaII	CCGG	2 cut(s)	273, 301
Hpy166II	GTNNAC	3 cut(s)	113, 250, 317
Hpy188I	TCNGA	1 cut(s)	312
Hpy188III	TCNNGA	3 cut(s)	10, 47, 203
Hpy8I	GTNNAC	3 cut(s)	113, 250, 317
Hpy99I	CGWCG	1 cut(s)	300
HpyAV	CCTTC	1 cut(s)	200
HpyCH4III	ACNGT	2 cut(s)	136, 247
HpyCH4V	TGCA	1 cut(s)	80
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	1 cut(s)	29
Hsp92I	GRCGYC	1 cut(s)	295
Hsp92II	CATG	1 cut(s)	56
Kzo9I	GATC	2 cut(s)	43, 199
LmnI	GCTCC	1 cut(s)	49
LpnPI	CCDG	8 cut(s)	23, 26, 32, 71, 238, 281, 286, 314
MaeI	CTAG	2 cut(s)	62, 227
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	2 cut(s)	45, 201
MboI	GATC	2 cut(s)	43, 199
MluCI	AATT	1 cut(s)	104
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	4 cut(s)	16, 135, 167, 295
MseI	TTAA	1 cut(s)	161
MspI	CCGG	2 cut(s)	273, 301
MwoI	GCNNNNNNNGC	1 cut(s)	58
NdeII	GATC	2 cut(s)	43, 199
NlaIII	CATG	1 cut(s)	56
NlaIV	GGNNCC	1 cut(s)	319
PkrI	GCNGC	2 cut(s)	238, 278
PspN4I	GGNNCC	1 cut(s)	319
PspPI	GGNCC	1 cut(s)	317
PstI	CTGCAG	1 cut(s)	82
SaqAI	TTAA	1 cut(s)	161
SatI	GCNGC	2 cut(s)	237, 277
Sau3AI	GATC	2 cut(s)	43, 199
Sau96I	GGNCC	1 cut(s)	317
SetI	ASST	4 cut(s)	63, 127, 193, 228
SfcI	CTRYAG	2 cut(s)	78, 243
SinI	GGWCC	1 cut(s)	317
Sse9I	AATT	1 cut(s)	104
SsiI	CCGC	2 cut(s)	237, 276
SspMI	CTAG	2 cut(s)	62, 227
TaaI	ACNGT	2 cut(s)	136, 247
TaqI	TCGA	1 cut(s)	198
TasI	AATT	1 cut(s)	104
TauI	GCSGC	2 cut(s)	239, 279
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TscAI	CASTG	1 cut(s)	141
TspDTI	ATGAA	2 cut(s)	135, 201
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	1 cut(s)	141
VpaK11BI	GGWCC	1 cut(s)	317
XapI	RAATTY	1 cut(s)	104
XspI	CTAG	2 cut(s)	62, 227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.