Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Forward (+)

48871074 .. 48874588

Gene Structure 3515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0383300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGCCGTTTCGCGACTGGATCTCTGACGCACGAATTGGATCTCCGATGCATGACGCCGACTGGAACCAAAACTCTGATTCTCTCTTCTTCATCTCAACGCCACCGGCCATGTCTCCGTCTCAGGCTCCCTCGATGACTCCCTCAGATTCCTCCATCTCAGTTGAAGAAGCTCGTGTTTTAGTTCAGCAATGGTCGCTGCCATTGATTAGATCTCCAAGCTCAAATCTGAGAATGAGAAGAATAGATTCATCAACCTCTTCTCTCACTATCTCAGGTGGGAGTCCACTTTCTGCTCTTTGGAGGAGTGTGATGGTTGCACCTTCAACTATTGGTGACTTGCAAATGATAGTGAAAGTGTGTTATCCAAGTTTAGAGTCTCTCTCTGTCAAGCTCGCAGTAGCTTTTGTGACCTCGCCGGAGGTTGCCGGAAATTTTATCAGAGTAGCTTTTATTGCTAGTGACAGTAGCTTTTGTGGTCGCCGGAGTTCGCCAGAAGTTAATCGGAGGTCCACCAGAAGTTGGCTGGAGGTTGGGCGACGGCTGGAGACCCTTCAAAGTTGGCCCGAGGTCGACCGGAGACCCGCCGGAGTTGGCCGGAAACCTCGTCGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

204

Amino Acids

22.58

Weight (kDa)

10.6

Isoelectric Point (pI)

92.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	519
AccI	GTMKAC	1 cut(s)	570
AccII	CGCG	1 cut(s)	12
AciI	CCGC	1 cut(s)	582
AclWI	GGATC	2 cut(s)	26, 46
AcoI	YGGCCR	2 cut(s)	105, 592
AcsI	RAATTY	1 cut(s)	430
AcyI	GRCGYC	1 cut(s)	54
AfiI	CCNNNNNNNGG	1 cut(s)	519
AgsI	TTSAA	3 cut(s)	164, 324, 554
AluBI	AGCT	6 cut(s)	170, 219, 391, 401, 446, 468
AluI	AGCT	6 cut(s)	170, 219, 391, 401, 446, 468
Alw26I	GTCTC	5 cut(s)	117, 123, 381, 539, 571
AlwI	GGATC	2 cut(s)	26, 46
Ama87I	CYCGRG	1 cut(s)	563
AoxI	GGCC	3 cut(s)	105, 560, 592
ApeKI	GCWGC	1 cut(s)	196
ApoI	RAATTY	1 cut(s)	430
Asp700I	GAANNNNTTC	1 cut(s)	244
AspS9I	GGNCC	2 cut(s)	507, 561
AsuHPI	GGTGA	1 cut(s)	344
AvaI	CYCGRG	1 cut(s)	563
AvaII	GGWCC	1 cut(s)	507
BauI	CACGAG	1 cut(s)	171
BbvI	GCAGC	1 cut(s)	183
BccI	CCATC	2 cut(s)	161, 304
BceAI	ACGGC	1 cut(s)	554
BcoDI	GTCTC	5 cut(s)	117, 123, 381, 539, 571
BfaI	CTAG	1 cut(s)	456
BglII	AGATCT	1 cut(s)	209
BisI	GCNGC	1 cut(s)	197
BlsI	GCNGC	1 cut(s)	198
Bme18I	GGWCC	1 cut(s)	507
BmeT110I	CYCGRG	1 cut(s)	563
BmgT120I	GGNCC	2 cut(s)	507, 561
BmiI	GGNNCC	2 cut(s)	65, 126
BmsI	GCATC	1 cut(s)	36
BplI	GAGNNNNNCTC	2 cut(s)	365, 397
BpmI	CTGGAG	2 cut(s)	545, 563
BsaHI	GRCGYC	1 cut(s)	54
BsaI	GGTCTC	2 cut(s)	539, 571
BsaJI	CCNNGG	1 cut(s)	564
BsaWI	WCCGGW	1 cut(s)	573
Bsc4I	CCNNNNNNNGG	1 cut(s)	519
Bse118I	RCCGGY	1 cut(s)	103
Bse1I	ACTGG	2 cut(s)	20, 65
Bse3DI	GCAATG	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	564
BseLI	CCNNNNNNNGG	1 cut(s)	519
BseMI	GCAATG	1 cut(s)	194
BseMII	CTCAG	5 cut(s)	134, 156, 171, 218, 285
BseNI	ACTGG	2 cut(s)	20, 65
BseRI	GAGGAG	1 cut(s)	316
BseXI	GCAGC	1 cut(s)	183
Bsh1236I	CGCG	1 cut(s)	12
Bsh1285I	CGRYCG	1 cut(s)	574
BshFI	GGCC	3 cut(s)	107, 562, 594
BsiEI	CGRYCG	1 cut(s)	574
BsiHKCI	CYCGRG	1 cut(s)	563
BsiSI	CCGG	7 cut(s)	104, 416, 426, 481, 574, 585, 595
BslI	CCNNNNNNNGG	1 cut(s)	519
BsmAI	GTCTC	5 cut(s)	117, 123, 381, 539, 571
BsmBI	CGTCTC	1 cut(s)	123
BsnI	GGCC	3 cut(s)	107, 562, 594
Bso31I	GGTCTC	2 cut(s)	539, 571
BsoBI	CYCGRG	1 cut(s)	563
Bsp143I	GATC	3 cut(s)	18, 38, 209
Bsp68I	TCGCGA	1 cut(s)	12
BspACI	CCGC	1 cut(s)	582
BspANI	GGCC	3 cut(s)	107, 562, 594
BspCNI	CTCAG	5 cut(s)	133, 155, 170, 219, 284
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	2 cut(s)	65, 126
BspPI	GGATC	2 cut(s)	26, 46
BspTNI	GGTCTC	2 cut(s)	539, 571
BsrDI	GCAATG	1 cut(s)	194
BsrFI	RCCGGY	1 cut(s)	103
BsrI	ACTGG	2 cut(s)	20, 65
BssAI	RCCGGY	1 cut(s)	103
BssECI	CCNNGG	1 cut(s)	564
BssMI	GATC	3 cut(s)	18, 38, 209
BssNI	GRCGYC	1 cut(s)	54
BssSI	CACGAG	1 cut(s)	171
Bst2BI	CACGAG	1 cut(s)	171
Bst4CI	ACNGT	1 cut(s)	464
Bst6I	CTCTTC	2 cut(s)	89, 262
BstACI	GRCGYC	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	5 cut(s)	120, 142, 157, 227, 271
BstFNI	CGCG	1 cut(s)	12
BstKTI	GATC	3 cut(s)	21, 41, 212
BstMAI	GTCTC	5 cut(s)	117, 123, 381, 539, 571
BstMBI	GATC	3 cut(s)	18, 38, 209
BstMCI	CGRYCG	1 cut(s)	574
BstMWI	GCNNNNNNNGC	2 cut(s)	193, 452
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	1 cut(s)	183
BstX2I	RGATCY	3 cut(s)	18, 38, 209
BstYI	RGATCY	3 cut(s)	18, 38, 209
BsuRI	GGCC	3 cut(s)	107, 562, 594
BtuMI	TCGCGA	1 cut(s)	12
Cac8I	GCNNGC	1 cut(s)	393
Cfr10I	RCCGGY	1 cut(s)	103
Cfr13I	GGNCC	2 cut(s)	507, 561
CseI	GACGC	2 cut(s)	35, 62
CviAII	CATG	2 cut(s)	50, 109
DdeI	CTNAG	5 cut(s)	120, 142, 157, 227, 271
DpnI	GATC	3 cut(s)	20, 40, 211
DpnII	GATC	3 cut(s)	18, 38, 209
EaeI	YGGCCR	2 cut(s)	105, 592
Eam1104I	CTCTTC	2 cut(s)	89, 262
EarI	CTCTTC	2 cut(s)	89, 262
Eco31I	GGTCTC	2 cut(s)	539, 571
Eco47I	GGWCC	1 cut(s)	507
Eco88I	CYCGRG	1 cut(s)	563
EcoT22I	ATGCAT	1 cut(s)	51
Esp3I	CGTCTC	1 cut(s)	123
FaeI	CATG	2 cut(s)	53, 112
FaiI	YATR	2 cut(s)	51, 110
FatI	CATG	2 cut(s)	49, 108
FauI	CCCGC	1 cut(s)	589
FblI	GTMKAC	1 cut(s)	570
Fnu4HI	GCNGC	1 cut(s)	197
Fsp4HI	GCNGC	1 cut(s)	197
FspBI	CTAG	1 cut(s)	456
GluI	GCNGC	1 cut(s)	197
GsuI	CTGGAG	2 cut(s)	545, 563
HaeIII	GGCC	3 cut(s)	107, 562, 594
HapII	CCGG	7 cut(s)	104, 416, 426, 481, 574, 585, 595
HgaI	GACGC	2 cut(s)	35, 62
Hin1I	GRCGYC	1 cut(s)	54
Hin1II	CATG	2 cut(s)	53, 112
HincII	GTYRAC	1 cut(s)	571
HindII	GTYRAC	1 cut(s)	571
HinfI	GANTC	6 cut(s)	77, 136, 146, 245, 280, 374
HpaII	CCGG	7 cut(s)	104, 416, 426, 481, 574, 585, 595
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	3 cut(s)	284, 510, 571
Hpy188I	TCNGA	8 cut(s)	25, 45, 76, 145, 228, 440, 504, 609
Hpy188III	TCNNGA	1 cut(s)	11
Hpy8I	GTNNAC	3 cut(s)	284, 510, 571
Hpy99I	CGWCG	2 cut(s)	540, 609
HpyAV	CCTTC	2 cut(s)	330, 560
HpyCH4III	ACNGT	1 cut(s)	464
HpyCH4V	TGCA	3 cut(s)	49, 317, 340
HpyF10VI	GCNNNNNNNGC	2 cut(s)	193, 452
HpyF3I	CTNAG	5 cut(s)	120, 142, 157, 227, 271
Hsp92I	GRCGYC	1 cut(s)	54
Hsp92II	CATG	2 cut(s)	53, 112
Kzo9I	GATC	3 cut(s)	18, 38, 209
LmnI	GCTCC	1 cut(s)	130
Lsp1109I	GCAGC	1 cut(s)	183
LweI	GCATC	1 cut(s)	36
MaeI	CTAG	1 cut(s)	456
MaeIII	GTNAC	3 cut(s)	332, 406, 458
MalI	GATC	3 cut(s)	20, 40, 211
MboI	GATC	3 cut(s)	18, 38, 209
MboII	GAAGA	5 cut(s)	76, 79, 176, 249, 249
MflI	RGATCY	3 cut(s)	18, 38, 209
MluCI	AATT	2 cut(s)	33, 430
MlyI	GAGTC	3 cut(s)	130, 289, 383
MmeI	TCCRAC	1 cut(s)	587
Mph1103I	ATGCAT	1 cut(s)	51
MroXI	GAANNNNTTC	1 cut(s)	244
MseI	TTAA	1 cut(s)	498
MspI	CCGG	7 cut(s)	104, 416, 426, 481, 574, 585, 595
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	2 cut(s)	193, 452
NdeII	GATC	3 cut(s)	18, 38, 209
NlaIII	CATG	2 cut(s)	53, 112
NlaIV	GGNNCC	2 cut(s)	65, 126
NmuCI	GTSAC	3 cut(s)	332, 406, 458
NruI	TCGCGA	1 cut(s)	12
NsiI	ATGCAT	1 cut(s)	51
PdmI	GAANNNNTTC	1 cut(s)	244
PfeI	GAWTC	3 cut(s)	77, 146, 245
PflMI	CCANNNNNTGG	1 cut(s)	519
PkrI	GCNGC	1 cut(s)	198
PleI	GAGTC	3 cut(s)	130, 288, 382
PpsI	GAGTC	3 cut(s)	130, 288, 382
PspN4I	GGNNCC	2 cut(s)	65, 126
PspPI	GGNCC	2 cut(s)	507, 561
PsuI	RGATCY	3 cut(s)	18, 38, 209
RruI	TCGCGA	1 cut(s)	12
SalI	GTCGAC	1 cut(s)	569
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	1 cut(s)	197
Sau3AI	GATC	3 cut(s)	18, 38, 209
Sau96I	GGNCC	2 cut(s)	507, 561
SchI	GAGTC	3 cut(s)	130, 289, 383
SfaNI	GCATC	1 cut(s)	36
SinI	GGWCC	1 cut(s)	507
Sse9I	AATT	2 cut(s)	33, 430
SsiI	CCGC	1 cut(s)	582
SspMI	CTAG	1 cut(s)	456
TaaI	ACNGT	1 cut(s)	464
TaqI	TCGA	2 cut(s)	131, 570
TasI	AATT	2 cut(s)	33, 430
TfiI	GAWTC	3 cut(s)	77, 146, 245
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TseFI	GTSAC	3 cut(s)	332, 406, 458
TseI	GCWGC	1 cut(s)	196
Tsp45I	GTSAC	3 cut(s)	332, 406, 458
TspDTI	ATGAA	2 cut(s)	79, 237
TspGWI	ACGGA	1 cut(s)	105
Van91I	CCANNNNNTGG	1 cut(s)	519
VpaK11BI	GGWCC	1 cut(s)	507
XapI	RAATTY	1 cut(s)	430
XcmI	CCANNNNNNNNNTGG	1 cut(s)	520
XmiI	GTMKAC	1 cut(s)	570
XmnI	GAANNNNTTC	1 cut(s)	244
XspI	CTAG	1 cut(s)	456
Zsp2I	ATGCAT	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.