Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Reverse (-)

60535672 .. 60538460

Gene Structure 2789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020046

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGAGTTCCTATGAATGTGGCTTCAATGGCAATGACCGCAATCTCGATTCCGAACGAAGAGATCCTGGTCTTACTGCTCAGAAGCAGAGATATGAAATTGTTAATGGCGGAGTAAAAACTCAAGAACAGTTAGAAGATGACGAAGCCAATGAAGAGAAAGGAGTGCCTAACTTTTGGCTGTCCACGCTGAAGAATAATAAGAAACTTTTGATTATGAACCATGATGAAAGCGCTCTCCAATATCTCAAAGATATCAAGTGGAGTAGGATACATGATCCTAAGGGATTCAGGCTGGAATTCTTATTTGATCCTAATCCTTACTTTCGAAACTCCGTCCTGACTAAAACATATTACATGGTTGAAGAACATGAACCGATATGGAGCAAGGAAATCGGGACGGAGATTGATTGGTATCCCGGGCAATGCTTGACAATCAATCCAAGAAAGGATCCAAAGAGTGCCAAGTCTATGACTCCAGCTGATATTTGTTCCAGCTTCTTTACGTTTTTCAAACTTCCCCAACATGACGATTATACTGGTGCAGATATGGCTTCTATGTTCAAGACTGGGATAGAAAACGACCGTGAAATGGGGAACTGGAACTCTACCATAGTGTCATGGTTCGCTGTTAATATAGACGAGCTTGATGATAGTGAAGACGACGATGGCAGTGACTATCATTTTGACTTTGATAGTGATGATGAAGATGACACGTACAAGAAGAATGCTGCTGCTTATAACAACAACAAAGAAGGGGAAGATCGCAAAAGAAAGAGAGAGAGTGACTGGACTAATGCTGAGAGAGCAATGGCTAGGTTAACGCTGCGAAAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

279

Amino Acids

32.48

Weight (kDa)

4.75

Isoelectric Point (pI)

39.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	28 - 197	5.5e-39	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	738
AciI	CCGC	2 cut(s)	37, 108
AclWI	GGATC	5 cut(s)	56, 269, 302, 443, 456
AcsI	RAATTY	1 cut(s)	296
AcuI	CTGAAG	1 cut(s)	209
AfaI	GTAC	1 cut(s)	716
AfeI	AGCGCT	1 cut(s)	232
AfiI	CCNNNNNNNGG	1 cut(s)	589
AflIII	ACRYGT	1 cut(s)	711
AgsI	TTSAA	4 cut(s)	25, 362, 511, 562
AjnI	CCWGG	1 cut(s)	64
AluBI	AGCT	3 cut(s)	479, 495, 643
AluI	AGCT	3 cut(s)	479, 495, 643
AlwI	GGATC	5 cut(s)	56, 269, 302, 443, 456
Ama87I	CYCGRG	1 cut(s)	416
Aor51HI	AGCGCT	1 cut(s)	232
ApeKI	GCWGC	3 cut(s)	728, 731, 823
ApoI	RAATTY	1 cut(s)	296
ArsI	GACNNNNNNTTYG	2 cut(s)	665, 697
AspLEI	GCGC	1 cut(s)	233
AsuC2I	CCSGG	2 cut(s)	417, 418
AsuII	TTCGAA	1 cut(s)	325
AvaI	CYCGRG	1 cut(s)	416
AxyI	CCTNAGG	1 cut(s)	279
BamHI	GGATCC	1 cut(s)	448
BbsI	GAAGAC	1 cut(s)	663
BbvI	GCAGC	3 cut(s)	715, 718, 810
BccI	CCATC	1 cut(s)	659
BcgI	CGANNNNNNTGC	2 cut(s)	373, 407
BciT130I	CCWGG	1 cut(s)	66
BciVI	GTATCC	2 cut(s)	261, 423
BcnI	CCSGG	2 cut(s)	417, 418
BfaI	CTAG	1 cut(s)	813
BfoI	RGCGCY	1 cut(s)	234
BfuI	GTATCC	2 cut(s)	261, 423
BisI	GCNGC	3 cut(s)	729, 732, 824
BlsI	GCNGC	3 cut(s)	730, 733, 825
Bme1390I	CCNGG	3 cut(s)	66, 417, 418
BmeT110I	CYCGRG	1 cut(s)	416
BmiI	GGNNCC	1 cut(s)	450
BmrFI	CCNGG	3 cut(s)	66, 417, 418
BmrI	ACTGGG	1 cut(s)	576
BmuI	ACTGGG	1 cut(s)	576
BpiI	GAAGAC	1 cut(s)	663
BpmI	CTGGAG	1 cut(s)	459
Bpu14I	TTCGAA	1 cut(s)	325
BpuEI	CTTGAG	1 cut(s)	105
BpuMI	CCSGG	2 cut(s)	417, 418
BsaAI	YACGTR	1 cut(s)	714
BsaBI	GATNNNNATC	2 cut(s)	312, 411
BsaJI	CCNNGG	1 cut(s)	416
Bsc4I	CCNNNNNNNGG	1 cut(s)	589
Bse1I	ACTGG	4 cut(s)	541, 571, 602, 791
Bse21I	CCTNAGG	1 cut(s)	279
Bse3DI	GCAATG	3 cut(s)	37, 428, 813
Bse8I	GATNNNNATC	2 cut(s)	312, 411
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	416
BseJI	GATNNNNATC	2 cut(s)	312, 411
BseLI	CCNNNNNNNGG	1 cut(s)	589
BseMI	GCAATG	3 cut(s)	37, 428, 813
BseMII	CTCAG	2 cut(s)	92, 789
BseNI	ACTGG	4 cut(s)	541, 571, 602, 791
BseXI	GCAGC	3 cut(s)	715, 718, 810
BsgI	GTGCAG	1 cut(s)	561
Bsh1285I	CGRYCG	1 cut(s)	583
BsiEI	CGRYCG	1 cut(s)	583
BsiHKCI	CYCGRG	1 cut(s)	416
BsiSI	CCGG	1 cut(s)	417
BslFI	GGGAC	1 cut(s)	409
BslI	CCNNNNNNNGG	1 cut(s)	589
BsmFI	GGGAC	1 cut(s)	409
BsmI	GAATGC	1 cut(s)	730
BsoBI	CYCGRG	1 cut(s)	416
Bsp119I	TTCGAA	1 cut(s)	325
Bsp143I	GATC	5 cut(s)	61, 274, 307, 448, 760
BspACI	CCGC	2 cut(s)	37, 108
BspCNI	CTCAG	2 cut(s)	91, 790
BspLI	GGNNCC	1 cut(s)	450
BspPI	GGATC	5 cut(s)	56, 269, 302, 443, 456
BspT104I	TTCGAA	1 cut(s)	325
BsrDI	GCAATG	3 cut(s)	37, 428, 813
BsrI	ACTGG	4 cut(s)	541, 571, 602, 791
BssECI	CCNNGG	1 cut(s)	416
BssMI	GATC	5 cut(s)	61, 274, 307, 448, 760
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	2 cut(s)	129, 584
Bst6I	CTCTTC	2 cut(s)	52, 147
BstBAI	YACGTR	1 cut(s)	714
BstBI	TTCGAA	1 cut(s)	325
BstDEI	CTNAG	3 cut(s)	78, 279, 798
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	5 cut(s)	64, 277, 310, 451, 763
BstMBI	GATC	5 cut(s)	61, 274, 307, 448, 760
BstMCI	CGRYCG	1 cut(s)	583
BstMWI	GCNNNNNNNGC	6 cut(s)	27, 36, 184, 548, 803, 829
BstNI	CCWGG	1 cut(s)	66
BstSCI	CCNGG	3 cut(s)	64, 415, 416
BstV1I	GCAGC	3 cut(s)	715, 718, 810
BstV2I	GAAGAC	1 cut(s)	663
BstX2I	RGATCY	2 cut(s)	61, 448
BstYI	RGATCY	2 cut(s)	61, 448
Bsu36I	CCTNAGG	1 cut(s)	279
BsuI	GTATCC	2 cut(s)	261, 423
BtsI	GCAGTG	1 cut(s)	676
BtsIMutI	CAGTG	1 cut(s)	676
CfoI	GCGC	1 cut(s)	233
Cfr9I	CCCGGG	1 cut(s)	416
Csp6I	GTAC	1 cut(s)	715
CviAII	CATG	6 cut(s)	221, 272, 355, 368, 524, 618
CviJI	RGCY	9 cut(s)	21, 146, 178, 292, 479, 495, 551, 643, 812
CviKI_1	RGCY	9 cut(s)	21, 146, 178, 292, 479, 495, 551, 643, 812
CviQI	GTAC	1 cut(s)	715
DdeI	CTNAG	3 cut(s)	78, 279, 798
DpnI	GATC	5 cut(s)	63, 276, 309, 450, 762
DpnII	GATC	5 cut(s)	61, 274, 307, 448, 760
Eam1104I	CTCTTC	2 cut(s)	52, 147
EarI	CTCTTC	2 cut(s)	52, 147
EciI	GGCGGA	1 cut(s)	123
Eco32I	GATATC	1 cut(s)	253
Eco47III	AGCGCT	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	209
Eco81I	CCTNAGG	1 cut(s)	279
Eco88I	CYCGRG	1 cut(s)	416
EcoRI	GAATTC	1 cut(s)	296
EcoRII	CCWGG	1 cut(s)	64
EcoRV	GATATC	1 cut(s)	253
FaeI	CATG	6 cut(s)	224, 275, 358, 371, 527, 621
FaqI	GGGAC	1 cut(s)	409
FatI	CATG	6 cut(s)	220, 271, 354, 367, 523, 617
Fnu4HI	GCNGC	3 cut(s)	729, 732, 824
Fsp4HI	GCNGC	3 cut(s)	729, 732, 824
FspBI	CTAG	1 cut(s)	813
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	3 cut(s)	729, 732, 824
GsuI	CTGGAG	1 cut(s)	459
HaeII	RGCGCY	1 cut(s)	234
HapII	CCGG	1 cut(s)	417
HhaI	GCGC	1 cut(s)	233
Hin1II	CATG	6 cut(s)	224, 275, 358, 371, 527, 621
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HincII	GTYRAC	1 cut(s)	819
HindII	GTYRAC	1 cut(s)	819
HinfI	GANTC	3 cut(s)	47, 285, 472
HpaI	GTTAAC	1 cut(s)	819
HpaII	CCGG	1 cut(s)	417
Hpy166II	GTNNAC	2 cut(s)	183, 819
Hpy188I	TCNGA	2 cut(s)	52, 81
Hpy188III	TCNNGA	5 cut(s)	44, 122, 337, 394, 562
Hpy8I	GTNNAC	2 cut(s)	183, 819
Hpy99I	CGWCG	1 cut(s)	665
HpyAV	CCTTC	1 cut(s)	746
HpyCH4III	ACNGT	2 cut(s)	129, 584
HpyCH4IV	ACGT	2 cut(s)	503, 713
HpyCH4V	TGCA	1 cut(s)	542
HpyF10VI	GCNNNNNNNGC	6 cut(s)	27, 36, 184, 548, 803, 829
HpyF3I	CTNAG	3 cut(s)	78, 279, 798
HpySE526I	ACGT	2 cut(s)	503, 713
Hsp92II	CATG	6 cut(s)	224, 275, 358, 371, 527, 621
HspAI	GCGC	1 cut(s)	231
KspAI	GTTAAC	1 cut(s)	819
Kzo9I	GATC	5 cut(s)	61, 274, 307, 448, 760
LmnI	GCTCC	1 cut(s)	381
Lsp1109I	GCAGC	3 cut(s)	715, 718, 810
MaeI	CTAG	1 cut(s)	813
MaeII	ACGT	2 cut(s)	503, 713
MaeIII	GTNAC	2 cut(s)	671, 782
MalI	GATC	5 cut(s)	63, 276, 309, 450, 762
MboI	GATC	5 cut(s)	61, 274, 307, 448, 760
MboII	GAAGA	9 cut(s)	69, 146, 164, 202, 374, 668, 716, 733, 770
MflI	RGATCY	2 cut(s)	61, 448
MluCI	AATT	2 cut(s)	96, 296
MlyI	GAGTC	1 cut(s)	466
MseI	TTAA	3 cut(s)	102, 630, 818
MspA1I	CMGCKG	1 cut(s)	479
MspI	CCGG	1 cut(s)	417
MspR9I	CCNGG	3 cut(s)	66, 417, 418
Mva1269I	GAATGC	1 cut(s)	730
MvaI	CCWGG	1 cut(s)	66
MwoI	GCNNNNNNNGC	6 cut(s)	27, 36, 184, 548, 803, 829
NciI	CCSGG	2 cut(s)	417, 418
NdeII	GATC	5 cut(s)	61, 274, 307, 448, 760
NlaIII	CATG	6 cut(s)	224, 275, 358, 371, 527, 621
NlaIV	GGNNCC	1 cut(s)	450
NmuCI	GTSAC	2 cut(s)	671, 782
NspV	TTCGAA	1 cut(s)	325
PctI	GAATGC	1 cut(s)	730
PfeI	GAWTC	2 cut(s)	47, 285
PkrI	GCNGC	3 cut(s)	730, 733, 825
PleI	GAGTC	1 cut(s)	466
PpsI	GAGTC	1 cut(s)	466
Ppu21I	YACGTR	1 cut(s)	714
PsiI	TTATAA	1 cut(s)	738
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	450
PsuI	RGATCY	2 cut(s)	61, 448
PvuII	CAGCTG	1 cut(s)	479
RsaI	GTAC	1 cut(s)	716
RsaNI	GTAC	1 cut(s)	715
SaqAI	TTAA	3 cut(s)	102, 630, 818
SatI	GCNGC	3 cut(s)	729, 732, 824
Sau3AI	GATC	5 cut(s)	61, 274, 307, 448, 760
SchI	GAGTC	1 cut(s)	466
ScrFI	CCNGG	3 cut(s)	66, 417, 418
SetI	ASST	6 cut(s)	481, 497, 506, 645, 716, 818
SfuI	TTCGAA	1 cut(s)	325
SmaI	CCCGGG	1 cut(s)	418
SmlI	CTYRAG	1 cut(s)	120
SmoI	CTYRAG	1 cut(s)	120
Sse9I	AATT	2 cut(s)	96, 296
SsiI	CCGC	2 cut(s)	37, 108
SspMI	CTAG	1 cut(s)	813
StyD4I	CCNGG	3 cut(s)	64, 415, 416
TaaI	ACNGT	2 cut(s)	129, 584
TaiI	ACGT	2 cut(s)	506, 716
TaqI	TCGA	2 cut(s)	45, 325
TasI	AATT	2 cut(s)	96, 296
TfiI	GAWTC	2 cut(s)	47, 285
Tru1I	TTAA	3 cut(s)	102, 630, 818
Tru9I	TTAA	3 cut(s)	102, 630, 818
TscAI	CASTG	1 cut(s)	676
TseFI	GTSAC	2 cut(s)	671, 782
TseI	GCWGC	3 cut(s)	728, 731, 823
Tsp45I	GTSAC	2 cut(s)	671, 782
TspDTI	ATGAA	7 cut(s)	27, 108, 165, 230, 240, 384, 717
TspGWI	ACGGA	2 cut(s)	322, 413
TspMI	CCCGGG	1 cut(s)	416
TspRI	CASTG	1 cut(s)	676
XapI	RAATTY	1 cut(s)	296
XmaI	CCCGGG	1 cut(s)	416
XspI	CTAG	1 cut(s)	813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.