Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Forward (+)

23032449 .. 23035693

Gene Structure 3245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G56950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGAGCAACGATAAGGACAGTTTCAATGTCAGCGATCTCACTTCTGCTCTTAAAGATGAGGATCGAGCTGGTCTTGTCAACGCTCTTAAGAACAAGCTCCAGAATCTAGCTGGACAACATTCTGATGTGCTCGAGAATCTGACTCCTAAAATTAGAAGGCGTGTTGAGGTTTTGCGGGAGATTCAGGGCAAACATGATGAAATAGAGACAAAATTCCGCGAGGAGAGAGCTGCTCTTGAAGCCAAGTATCAAAAGTTATATCAGCCTTTGTATAACAAGCGTTATGAGATTGTGAATGGAGCTACTGAAGTTGAAGGGGCTCCAGAGGATGCTAAGATGGACCAAGGAGACGAGAAAACTGCAGAAGAGAAAGGAGTCCCTAGTTTCTGGCTGACTGCTCTGAAAAATAATGATGTTATATCTGAAGAGATCACAGAGCGTGATGAAGGAGCCCTTATATATCTTAAAGATATCAAGTGGTGCAAGATTGAAGAACCAAAGGGATTCAAACTTGAGTTTTTCTTCGACCAGAATCCTTACTTCAAAAACACCCTATTAACAAAGGCGTATCATATGATTGATGAAGATGAGCCTCTGCTTGAGAAGGCTATTGGGACAGAGATTGATTGGTATCCTGGAAAATGCTTAACTCAGAAGATTCTTAAGAAGAAGCCTAAGAAAGGTGCAAAGAATGCCAAGCCAATTACCAAAACTGAAGATTGTGAAAGCTTCTTCAACTTCTTCAATCCTCCCCAAGTTCCTGATGATGATGAAGACATTGACGAAGAAAGAGCCGAGGAACTTCAGAATCTGATGGAACAAGATTATGACATTGGTTCTACAATCCGGGAGAAGATCATACCTCATGCTGTCTCATGGTTTACTGGTGAGGCTATTGAGGGAGAGGAGTTTGAAATAGACAATGACGATGAAGATGATATCGATGAGGATGAAGATGAGGATGAAGAAGATGAAGACGAAGATGAGGAAGAAGACGACGAAGATGAGGAGGAAGAAGTAAGCAAGACCAAAAAGAAGCCATCAGTCTTACACAAGAAAGGAGGGAGACCTCAGGTTACCGATGATCAACAAGGAGAGAGGCCTCCTGAATGCAAACAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009292 GO:0009294 GO:0009987 GO:0016444 GO:0033554 GO:0034641 GO:0042393 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0046483 GO:0050896 GO:0051704 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

374

Amino Acids

43.29

Weight (kDa)

4.42

Isoelectric Point (pI)

53.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	53 - 297	1.1e-89	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	219
AciI	CCGC	2 cut(s)	175, 217
AclWI	GGATC	1 cut(s)	69
AcsI	RAATTY	1 cut(s)	212
AcuI	CTGAAG	4 cut(s)	327, 444, 735, 788
AfiI	CCNNNNNNNGG	1 cut(s)	680
AflII	CTTAAG	2 cut(s)	86, 662
AgsI	TTSAA	9 cut(s)	25, 239, 314, 491, 508, 544, 736, 745, 914
AjnI	CCWGG	1 cut(s)	634
AluBI	AGCT	6 cut(s)	68, 97, 110, 230, 302, 729
AluI	AGCT	6 cut(s)	68, 97, 110, 230, 302, 729
Alw21I	GWGCWC	1 cut(s)	132
Alw26I	GTCTC	4 cut(s)	200, 342, 877, 1060
AlwI	GGATC	1 cut(s)	69
AlwNI	CAGNNNCTG	1 cut(s)	811
Ama87I	CYCGRG	1 cut(s)	131
AoxI	GGCC	1 cut(s)	1100
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	340
AsuC2I	CCSGG	1 cut(s)	848
AsuHPI	GGTGA	1 cut(s)	899
AvaI	CYCGRG	1 cut(s)	131
AvaII	GGWCC	1 cut(s)	340
AxyI	CCTNAGG	1 cut(s)	1071
BanII	GRGCYC	2 cut(s)	322, 454
BbsI	GAAGAC	3 cut(s)	780, 981, 999
Bbv12I	GWGCWC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	3 cut(s)	331, 808, 1048
BcgI	CGANNNNNNTGC	2 cut(s)	341, 375
BciT130I	CCWGG	1 cut(s)	636
BciVI	GTATCC	1 cut(s)	642
BclI	TGATCA	1 cut(s)	1084
BcnI	CCSGG	1 cut(s)	848
BcoDI	GTCTC	4 cut(s)	200, 342, 877, 1060
BfaI	CTAG	2 cut(s)	107, 381
BfmI	CTRYAG	1 cut(s)	360
BfrI	CTTAAG	2 cut(s)	86, 662
BfuI	GTATCC	1 cut(s)	642
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
Bme1390I	CCNGG	2 cut(s)	636, 848
Bme18I	GGWCC	1 cut(s)	340
BmeT110I	CYCGRG	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	340
BmiI	GGNNCC	2 cut(s)	321, 451
BmrFI	CCNGG	2 cut(s)	636, 848
BmsI	GCATC	1 cut(s)	319
BpiI	GAAGAC	3 cut(s)	780, 981, 999
BplI	GAGNNNNNCTC	2 cut(s)	217, 249
BpmI	CTGGAG	2 cut(s)	83, 306
BpuEI	CTTGAG	2 cut(s)	533, 620
BpuMI	CCSGG	1 cut(s)	848
Bsa29I	ATCGAT	1 cut(s)	942
BsaBI	GATNNNNATC	2 cut(s)	60, 630
BsaI	GGTCTC	1 cut(s)	1060
BsaJI	CCNNGG	2 cut(s)	343, 795
Bsc4I	CCNNNNNNNGG	1 cut(s)	680
Bse1I	ACTGG	1 cut(s)	889
Bse21I	CCTNAGG	1 cut(s)	1071
Bse8I	GATNNNNATC	2 cut(s)	60, 630
BseBI	CCWGG	1 cut(s)	636
BseCI	ATCGAT	1 cut(s)	942
BseDI	CCNNGG	2 cut(s)	343, 795
BseGI	GGATG	3 cut(s)	334, 955, 967
BseJI	GATNNNNATC	2 cut(s)	60, 630
BseLI	CCNNNNNNNGG	1 cut(s)	680
BseMII	CTCAG	2 cut(s)	665, 1085
BseNI	ACTGG	1 cut(s)	889
BseRI	GAGGAG	3 cut(s)	236, 920, 1022
BseXI	GCAGC	1 cut(s)	217
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	1 cut(s)	1102
BshVI	ATCGAT	1 cut(s)	942
BsiHKAI	GWGCWC	1 cut(s)	132
BsiHKCI	CYCGRG	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	847
BslFI	GGGAC	2 cut(s)	362, 628
BslI	CCNNNNNNNGG	1 cut(s)	680
BsmAI	GTCTC	4 cut(s)	200, 342, 877, 1060
BsmBI	CGTCTC	1 cut(s)	342
BsmFI	GGGAC	2 cut(s)	362, 628
BsmI	GAATGC	2 cut(s)	697, 1115
BsnI	GGCC	1 cut(s)	1102
Bso31I	GGTCTC	1 cut(s)	1060
BsoBI	CYCGRG	1 cut(s)	131
Bsp1286I	GDGCHC	3 cut(s)	132, 322, 454
Bsp143I	GATC	5 cut(s)	34, 61, 429, 855, 1084
BspACI	CCGC	2 cut(s)	175, 217
BspANI	GGCC	1 cut(s)	1102
BspCNI	CTCAG	2 cut(s)	664, 1084
BspDI	ATCGAT	1 cut(s)	942
BspFNI	CGCG	1 cut(s)	219
BspLI	GGNNCC	2 cut(s)	321, 451
BspMAI	CTGCAG	1 cut(s)	364
BspPI	GGATC	1 cut(s)	69
BspTI	CTTAAG	2 cut(s)	86, 662
BspTNI	GGTCTC	1 cut(s)	1060
BsrI	ACTGG	1 cut(s)	889
BssECI	CCNNGG	2 cut(s)	343, 795
BssMI	GATC	5 cut(s)	34, 61, 429, 855, 1084
BssT1I	CCWWGG	1 cut(s)	343
Bst2UI	CCWGG	1 cut(s)	636
Bst4CI	ACNGT	2 cut(s)	20, 1122
Bst6I	CTCTTC	2 cut(s)	360, 420
BstAFI	CTTAAG	2 cut(s)	86, 662
BstAPI	GCANNNNNTGC	1 cut(s)	692
BstDEI	CTNAG	4 cut(s)	333, 651, 675, 1071
BstEII	GGTNACC	1 cut(s)	1075
BstENI	CCTNNNNNAGG	1 cut(s)	678
BstF5I	GGATG	3 cut(s)	334, 955, 967
BstFNI	CGCG	1 cut(s)	219
BstKTI	GATC	5 cut(s)	37, 64, 432, 858, 1087
BstMAI	GTCTC	4 cut(s)	200, 342, 877, 1060
BstMBI	GATC	5 cut(s)	34, 61, 429, 855, 1084
BstMWI	GCNNNNNNNGC	2 cut(s)	239, 692
BstNI	CCWGG	1 cut(s)	636
BstPI	GGTNACC	1 cut(s)	1075
BstSCI	CCNGG	2 cut(s)	634, 846
BstSFI	CTRYAG	1 cut(s)	360
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	217
BstV2I	GAAGAC	3 cut(s)	780, 981, 999
Bsu15I	ATCGAT	1 cut(s)	942
Bsu36I	CCTNAGG	1 cut(s)	1071
BsuI	GTATCC	1 cut(s)	642
BsuRI	GGCC	1 cut(s)	1102
BsuTUI	ATCGAT	1 cut(s)	942
BtsCI	GGATG	3 cut(s)	334, 955, 967
CaiI	CAGNNNCTG	1 cut(s)	811
Cfr13I	GGNCC	1 cut(s)	340
ClaI	ATCGAT	1 cut(s)	942
CviAII	CATG	3 cut(s)	194, 866, 876
DdeI	CTNAG	4 cut(s)	333, 651, 675, 1071
DpnI	GATC	5 cut(s)	36, 63, 431, 857, 1086
DpnII	GATC	5 cut(s)	34, 61, 429, 855, 1084
Eam1104I	CTCTTC	2 cut(s)	360, 420
EarI	CTCTTC	2 cut(s)	360, 420
Eco130I	CCWWGG	1 cut(s)	343
Eco147I	AGGCCT	1 cut(s)	1102
Eco24I	GRGCYC	2 cut(s)	322, 454
Eco31I	GGTCTC	1 cut(s)	1060
Eco32I	GATATC	2 cut(s)	472, 940
Eco47I	GGWCC	1 cut(s)	340
Eco57I	CTGAAG	4 cut(s)	327, 444, 735, 788
Eco81I	CCTNAGG	1 cut(s)	1071
Eco88I	CYCGRG	1 cut(s)	131
Eco91I	GGTNACC	1 cut(s)	1075
EcoNI	CCTNNNNNAGG	1 cut(s)	678
EcoO65I	GGTNACC	1 cut(s)	1075
EcoRII	CCWGG	1 cut(s)	634
EcoRV	GATATC	2 cut(s)	472, 940
EcoT14I	CCWWGG	1 cut(s)	343
EcoT38I	GRGCYC	2 cut(s)	322, 454
ErhI	CCWWGG	1 cut(s)	343
Esp3I	CGTCTC	1 cut(s)	342
FaeI	CATG	3 cut(s)	197, 869, 879
FalI	AAGNNNNNCTT	2 cut(s)	438, 470
FaqI	GGGAC	2 cut(s)	362, 628
FatI	CATG	3 cut(s)	193, 865, 875
FauI	CCCGC	1 cut(s)	168
FauNDI	CATATG	1 cut(s)	573
FbaI	TGATCA	1 cut(s)	1084
Fnu4HI	GCNGC	1 cut(s)	231
FokI	GGATG	3 cut(s)	341, 962, 974
FriOI	GRGCYC	2 cut(s)	322, 454
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	2 cut(s)	107, 381
GluI	GCNGC	1 cut(s)	231
GsuI	CTGGAG	2 cut(s)	83, 306
HaeIII	GGCC	1 cut(s)	1102
HapII	CCGG	1 cut(s)	847
Hin1II	CATG	3 cut(s)	197, 869, 879
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HindIII	AAGCTT	1 cut(s)	727
HinfI	GANTC	9 cut(s)	103, 136, 142, 181, 375, 504, 532, 658, 808
HpaII	CCGG	1 cut(s)	847
HphI	GGTGA	1 cut(s)	899
Hpy166II	GTNNAC	2 cut(s)	79, 882
Hpy188I	TCNGA	7 cut(s)	124, 141, 402, 424, 654, 807, 813
Hpy188III	TCNNGA	6 cut(s)	100, 133, 236, 323, 761, 1106
Hpy8I	GTNNAC	2 cut(s)	79, 882
Hpy99I	CGWCG	1 cut(s)	1001
HpyAV	CCTTC	4 cut(s)	150, 308, 440, 598
HpyCH4III	ACNGT	2 cut(s)	20, 1122
HpyCH4V	TGCA	4 cut(s)	362, 483, 686, 1113
HpyF10VI	GCNNNNNNNGC	2 cut(s)	239, 692
HpyF3I	CTNAG	4 cut(s)	333, 651, 675, 1071
Hsp92II	CATG	3 cut(s)	197, 869, 879
Ksp22I	TGATCA	1 cut(s)	1084
Kzo9I	GATC	5 cut(s)	34, 61, 429, 855, 1084
LmnI	GCTCC	4 cut(s)	102, 299, 325, 449
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	1 cut(s)	319
MaeI	CTAG	2 cut(s)	107, 381
MaeIII	GTNAC	1 cut(s)	1075
MalI	GATC	5 cut(s)	36, 63, 431, 857, 1086
MboI	GATC	5 cut(s)	34, 61, 429, 855, 1084
MhlI	GDGCHC	3 cut(s)	132, 322, 454
MluCI	AATT	3 cut(s)	150, 212, 702
MlyI	GAGTC	2 cut(s)	136, 384
MseI	TTAA	6 cut(s)	51, 87, 465, 557, 647, 663
MslI	CAYNNNNRTG	1 cut(s)	123
MspCI	CTTAAG	2 cut(s)	86, 662
MspI	CCGG	1 cut(s)	847
MspR9I	CCNGG	2 cut(s)	636, 848
Mva1269I	GAATGC	2 cut(s)	697, 1115
MvaI	CCWGG	1 cut(s)	636
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	2 cut(s)	239, 692
NciI	CCSGG	1 cut(s)	848
NdeI	CATATG	1 cut(s)	573
NdeII	GATC	5 cut(s)	34, 61, 429, 855, 1084
NlaIII	CATG	3 cut(s)	197, 869, 879
NlaIV	GGNNCC	2 cut(s)	321, 451
NmeAIII	GCCGAG	1 cut(s)	820
PaeR7I	CTCGAG	1 cut(s)	131
PceI	AGGCCT	1 cut(s)	1102
PctI	GAATGC	2 cut(s)	697, 1115
PfeI	GAWTC	7 cut(s)	103, 136, 181, 504, 532, 658, 808
PfoI	TCCNGGA	2 cut(s)	634, 846
PkrI	GCNGC	1 cut(s)	232
PleI	GAGTC	2 cut(s)	136, 383
PpsI	GAGTC	2 cut(s)	136, 383
Psp6I	CCWGG	1 cut(s)	634
PspEI	GGTNACC	1 cut(s)	1075
PspGI	CCWGG	1 cut(s)	634
PspN4I	GGNNCC	2 cut(s)	321, 451
PspPI	GGNCC	1 cut(s)	340
PstI	CTGCAG	1 cut(s)	364
PstNI	CAGNNNCTG	1 cut(s)	811
RseI	CAYNNNNRTG	1 cut(s)	123
SaqAI	TTAA	6 cut(s)	51, 87, 465, 557, 647, 663
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	5 cut(s)	34, 61, 429, 855, 1084
Sau96I	GGNCC	1 cut(s)	340
SchI	GAGTC	2 cut(s)	136, 384
ScrFI	CCNGG	2 cut(s)	636, 848
SduI	GDGCHC	3 cut(s)	132, 322, 454
SfaNI	GCATC	1 cut(s)	319
SfcI	CTRYAG	1 cut(s)	360
Sfr274I	CTCGAG	1 cut(s)	131
SinI	GGWCC	1 cut(s)	340
SlaI	CTCGAG	1 cut(s)	131
SmiMI	CAYNNNNRTG	1 cut(s)	123
SmlI	CTYRAG	5 cut(s)	86, 131, 512, 599, 662
SmoI	CTYRAG	5 cut(s)	86, 131, 512, 599, 662
Sse9I	AATT	3 cut(s)	150, 212, 702
SseBI	AGGCCT	1 cut(s)	1102
SsiI	CCGC	2 cut(s)	175, 217
SspMI	CTAG	2 cut(s)	107, 381
StuI	AGGCCT	1 cut(s)	1102
StyD4I	CCNGG	2 cut(s)	634, 846
StyI	CCWWGG	1 cut(s)	343
TaaI	ACNGT	2 cut(s)	20, 1122
TaqI	TCGA	4 cut(s)	64, 132, 525, 942
TasI	AATT	3 cut(s)	150, 212, 702
TfiI	GAWTC	7 cut(s)	103, 136, 181, 504, 532, 658, 808
Tru1I	TTAA	6 cut(s)	51, 87, 465, 557, 647, 663
Tru9I	TTAA	6 cut(s)	51, 87, 465, 557, 647, 663
TseI	GCWGC	1 cut(s)	230
TspDTI	ATGAA	8 cut(s)	213, 459, 597, 786, 945, 966, 978, 987
Vha464I	CTTAAG	2 cut(s)	86, 662
VpaK11BI	GGWCC	1 cut(s)	340
XagI	CCTNNNNNAGG	1 cut(s)	678
XapI	RAATTY	1 cut(s)	212
XcmI	CCANNNNNNNNNTGG	1 cut(s)	107
XhoI	CTCGAG	1 cut(s)	131
XspI	CTAG	2 cut(s)	107, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.