Rorug02G0383800

Belongs to the nucleosome assembly protein (NAP) family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
48984854 .. 48986189
1336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0383800.1

Sequence Viewer

Length: 381 bp
ATGGCAAGCCACCAATCAGGTCAGAATATTGGATACCAGGCCGGCGAATTGAGCGGCCAAGCTCAGGTGAAGAAGGATGAGCTTCAGAACAAGGCATCAGATGCATCCCAGGCTGTAAGGGACAAGGCATCAGATGCATCTCAGGCTGCCCAAAACAAGGCAGGAGGTGCTTCTAGCACTGCCCAAGATATCAAGGAGCAAGCCTCCCACCTCCTTCAACAGACAGGAGAGCAAGTGAAAAGCATGGCTCAGGGGGCAGCTGACGCAGTGAAGAACACTTTGGGAATGAATAACCCAAACAATCCAAGCAACAATCCAAGCAATCCAAACAACCCTAGCAACCTTAGCCACCCAAGCAACCCAAACAACCCAAGGATTTGA

Protein Analysis

126

Amino Acids

13.07

Weight (kDa)

6.82

Isoelectric Point (pI)

34.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000381)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 54
AciI CCGC 1 cut(s) 54
AcoI YGGCCR 1 cut(s) 55
AcuI CTGAAG 1 cut(s) 68
AfiI CCNNNNNNNGG 2 cut(s) 64, 157
AgsI TTSAA 1 cut(s) 218
AjnI CCWGG 2 cut(s) 36, 108
AjuI GAANNNNNNNTTGG 2 cut(s) 263, 295
AluBI AGCT 3 cut(s) 62, 82, 260
AluI AGCT 3 cut(s) 62, 82, 260
AoxI GGCC 2 cut(s) 39, 55
ApeKI GCWGC 2 cut(s) 146, 257
AsuHPI GGTGA 1 cut(s) 79
BbvI GCAGC 2 cut(s) 133, 269
BciT130I CCWGG 2 cut(s) 38, 110
BciVI GTATCC 1 cut(s) 26
BfaI CTAG 2 cut(s) 174, 336
BfuI GTATCC 1 cut(s) 26
BisI GCNGC 3 cut(s) 55, 147, 258
BlsI GCNGC 3 cut(s) 56, 148, 259
Bme1390I CCNGG 2 cut(s) 38, 110
BmrFI CCNGG 2 cut(s) 38, 110
BmsI GCATC 6 cut(s) 91, 104, 113, 124, 137, 146
BplI GAGNNNNNCTC 2 cut(s) 188, 220
Bpu10I CCTNAGC 3 cut(s) 63, 249, 344
BsaJI CCNNGG 2 cut(s) 108, 371
BsaXI ACNNNNNCTCC 2 cut(s) 219, 249
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 157
Bse118I RCCGGY 1 cut(s) 41
BseBI CCWGG 2 cut(s) 38, 110
BseDI CCNNGG 2 cut(s) 108, 371
BseGI GGATG 2 cut(s) 82, 104
BseLI CCNNNNNNNGG 2 cut(s) 64, 157
BseMII CTCAG 3 cut(s) 77, 155, 263
BseXI GCAGC 2 cut(s) 133, 269
BshFI GGCC 2 cut(s) 41, 57
BsiSI CCGG 1 cut(s) 42
BslFI GGGAC 1 cut(s) 134
BslI CCNNNNNNNGG 2 cut(s) 64, 157
BsmFI GGGAC 1 cut(s) 134
BsnI GGCC 2 cut(s) 41, 57
BspACI CCGC 1 cut(s) 54
BspANI GGCC 2 cut(s) 41, 57
BspCNI CTCAG 3 cut(s) 76, 154, 262
BsrBI CCGCTC 1 cut(s) 54
BsrFI RCCGGY 1 cut(s) 41
BssAI RCCGGY 1 cut(s) 41
BssECI CCNNGG 2 cut(s) 108, 371
BssT1I CCWWGG 1 cut(s) 371
Bst2UI CCWGG 2 cut(s) 38, 110
BstAPI GCANNNNNTGC 3 cut(s) 101, 134, 167
BstC8I GCNNGC 3 cut(s) 7, 43, 201
BstDEI CTNAG 4 cut(s) 63, 141, 249, 344
BstF5I GGATG 2 cut(s) 82, 104
BstNI CCWGG 2 cut(s) 38, 110
BstSCI CCNGG 2 cut(s) 36, 108
BstV1I GCAGC 2 cut(s) 133, 269
BsuI GTATCC 1 cut(s) 26
BsuRI GGCC 2 cut(s) 41, 57
BtsCI GGATG 2 cut(s) 82, 104
BtsI GCAGTG 2 cut(s) 177, 273
BtsIMutI CAGTG 2 cut(s) 177, 273
Cac8I GCNNGC 3 cut(s) 7, 43, 201
Cfr10I RCCGGY 1 cut(s) 41
CseI GACGC 1 cut(s) 272
CviAII CATG 1 cut(s) 244
DdeI CTNAG 4 cut(s) 63, 141, 249, 344
EaeI YGGCCR 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 371
Eco32I GATATC 1 cut(s) 190
Eco57I CTGAAG 1 cut(s) 68
EcoRII CCWGG 2 cut(s) 36, 108
EcoRV GATATC 1 cut(s) 190
EcoT14I CCWWGG 1 cut(s) 371
EcoT22I ATGCAT 2 cut(s) 106, 139
ErhI CCWWGG 1 cut(s) 371
FaeI CATG 1 cut(s) 247
FaiI YATR 1 cut(s) 245
FaqI GGGAC 1 cut(s) 134
FatI CATG 1 cut(s) 243
Fnu4HI GCNGC 3 cut(s) 55, 147, 258
FokI GGATG 2 cut(s) 89, 91
Fsp4HI GCNGC 3 cut(s) 55, 147, 258
FspBI CTAG 2 cut(s) 174, 336
GluI GCNGC 3 cut(s) 55, 147, 258
HaeIII GGCC 2 cut(s) 41, 57
HapII CCGG 1 cut(s) 42
HgaI GACGC 1 cut(s) 272
Hin1II CATG 1 cut(s) 247
HpaII CCGG 1 cut(s) 42
HphI GGTGA 1 cut(s) 79
Hpy188I TCNGA 4 cut(s) 24, 87, 100, 133
HpyAV CCTTC 2 cut(s) 67, 224
HpyCH4V TGCA 2 cut(s) 104, 137
HpyF3I CTNAG 4 cut(s) 63, 141, 249, 344
Hsp92II CATG 1 cut(s) 247
KroI GCCGGC 1 cut(s) 41
KroNI GCCGGC 1 cut(s) 43
LmnI GCTCC 1 cut(s) 196
Lsp1109I GCAGC 2 cut(s) 133, 269
LweI GCATC 6 cut(s) 91, 104, 113, 124, 137, 146
MaeI CTAG 2 cut(s) 174, 336
MbiI CCGCTC 1 cut(s) 54
MboII GAAGA 2 cut(s) 82, 283
MluCI AATT 1 cut(s) 47
MnlI CCTC 3 cut(s) 158, 214, 221
Mph1103I ATGCAT 2 cut(s) 106, 139
MroNI GCCGGC 1 cut(s) 41
MspA1I CMGCKG 1 cut(s) 260
MspI CCGG 1 cut(s) 42
MspR9I CCNGG 2 cut(s) 38, 110
MvaI CCWGG 2 cut(s) 38, 110
NaeI GCCGGC 1 cut(s) 43
NgoMIV GCCGGC 1 cut(s) 41
NlaIII CATG 1 cut(s) 247
NsiI ATGCAT 2 cut(s) 106, 139
PdiI GCCGGC 1 cut(s) 43
PkrI GCNGC 3 cut(s) 56, 148, 259
Psp6I CCWGG 2 cut(s) 36, 108
PspGI CCWGG 2 cut(s) 36, 108
PvuII CAGCTG 1 cut(s) 260
SatI GCNGC 3 cut(s) 55, 147, 258
ScrFI CCNGG 2 cut(s) 38, 110
SetI ASST 8 cut(s) 22, 64, 69, 84, 169, 213, 262, 345
SfaNI GCATC 6 cut(s) 91, 104, 113, 124, 137, 146
Sse9I AATT 1 cut(s) 47
SsiI CCGC 1 cut(s) 54
SspI AATATT 1 cut(s) 28
SspMI CTAG 2 cut(s) 174, 336
StyD4I CCNGG 2 cut(s) 36, 108
StyI CCWWGG 1 cut(s) 371
TasI AATT 1 cut(s) 47
TauI GCSGC 1 cut(s) 57
TscAI CASTG 2 cut(s) 184, 273
TseI GCWGC 2 cut(s) 146, 257
TspDTI ATGAA 1 cut(s) 302
TspRI CASTG 2 cut(s) 184, 273
XspI CTAG 2 cut(s) 174, 336
Zsp2I ATGCAT 2 cut(s) 106, 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.