Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Reverse (-)

62791021 .. 62792359

Gene Structure 1339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG443300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGAGTTCCTCTGGATCTGGCTTCAATGGCTCCGACCACAACCTCAATTCCGAGGGAAGAGATCCTGGTCTTACTGCTCAGAAGCAGATTAAGTCTCGGATTACACCCAAGATAGTGAAGCGCGTTCATGTTTTGAGACAGATAGAGGGGCAGCATAAGAAGCTGGAACAACAATTTTTTGAGGACAGAGCTGCACTGGTAGATAAATACCATCAGCTTTACAAACCTCTCTACGAAAAGAGGTATGAGATTGTTAATGGTATCACTGAAGTGGAAGGAGTGAAAACTCCAGACCAAGGACAAGAAGCCACTGAAGTTAAATGTGGAATTCTGATCGATAAGTTGTTTCCTGGAATAGATAATGGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

123

Amino Acids

13.81

Weight (kDa)

7.85

Isoelectric Point (pI)

34.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	40 - 96	3.4e-12	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	123
AclWI	GGATC	2 cut(s)	22, 56
AcsI	RAATTY	1 cut(s)	327
AcuI	CTGAAG	2 cut(s)	288, 333
AfiI	CCNNNNNNNGG	1 cut(s)	296
AgsI	TTSAA	1 cut(s)	25
AjnI	CCWGG	2 cut(s)	64, 349
AleI	CACNNNNGTG	1 cut(s)	269
AluBI	AGCT	4 cut(s)	163, 191, 217, 368
AluI	AGCT	4 cut(s)	163, 191, 217, 368
Alw26I	GTCTC	2 cut(s)	99, 130
AlwI	GGATC	2 cut(s)	22, 56
ApeKI	GCWGC	2 cut(s)	151, 191
ApoI	RAATTY	1 cut(s)	327
AspLEI	GCGC	1 cut(s)	123
BbvI	GCAGC	2 cut(s)	163, 178
BccI	CCATC	1 cut(s)	219
BciT130I	CCWGG	2 cut(s)	66, 351
BcoDI	GTCTC	2 cut(s)	99, 130
BisI	GCNGC	2 cut(s)	152, 192
BlsI	GCNGC	2 cut(s)	153, 193
Bme1390I	CCNGG	2 cut(s)	66, 351
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	2 cut(s)	66, 351
BpmI	CTGGAG	1 cut(s)	273
Bsa29I	ATCGAT	1 cut(s)	336
BsaJI	CCNNGG	2 cut(s)	51, 295
Bsc4I	CCNNNNNNNGG	1 cut(s)	296
Bse1I	ACTGG	1 cut(s)	201
BseBI	CCWGG	2 cut(s)	66, 351
BseCI	ATCGAT	1 cut(s)	336
BseDI	CCNNGG	2 cut(s)	51, 295
BseLI	CCNNNNNNNGG	1 cut(s)	296
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	1 cut(s)	201
BseXI	GCAGC	2 cut(s)	163, 178
BsgI	GTGCAG	1 cut(s)	177
Bsh1236I	CGCG	1 cut(s)	123
BshVI	ATCGAT	1 cut(s)	336
BslI	CCNNNNNNNGG	1 cut(s)	296
BsmAI	GTCTC	2 cut(s)	99, 130
Bsp143I	GATC	3 cut(s)	14, 61, 333
BspCNI	CTCAG	1 cut(s)	91
BspDI	ATCGAT	1 cut(s)	336
BspFNI	CGCG	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	31
BspPI	GGATC	2 cut(s)	22, 56
BsrI	ACTGG	1 cut(s)	201
BssECI	CCNNGG	2 cut(s)	51, 295
BssMI	GATC	3 cut(s)	14, 61, 333
BssT1I	CCWWGG	1 cut(s)	295
Bst2UI	CCWGG	2 cut(s)	66, 351
Bst6I	CTCTTC	1 cut(s)	52
BstDEI	CTNAG	1 cut(s)	78
BstFNI	CGCG	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	3 cut(s)	17, 64, 336
BstMAI	GTCTC	2 cut(s)	99, 130
BstMBI	GATC	3 cut(s)	14, 61, 333
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 160
BstNI	CCWGG	2 cut(s)	66, 351
BstSCI	CCNGG	2 cut(s)	64, 349
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	2 cut(s)	163, 178
BstX2I	RGATCY	2 cut(s)	14, 61
BstYI	RGATCY	2 cut(s)	14, 61
Bsu15I	ATCGAT	1 cut(s)	336
BsuTUI	ATCGAT	1 cut(s)	336
BtsIMutI	CAGTG	3 cut(s)	194, 264, 309
CfoI	GCGC	1 cut(s)	123
ClaI	ATCGAT	1 cut(s)	336
CviAII	CATG	1 cut(s)	128
CviJI	RGCY	7 cut(s)	21, 30, 163, 191, 217, 308, 368
CviKI_1	RGCY	7 cut(s)	21, 30, 163, 191, 217, 308, 368
DdeI	CTNAG	1 cut(s)	78
DpnI	GATC	3 cut(s)	16, 63, 335
DpnII	GATC	3 cut(s)	14, 61, 333
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	295
Eco57I	CTGAAG	2 cut(s)	288, 333
EcoRI	GAATTC	1 cut(s)	327
EcoRII	CCWGG	2 cut(s)	64, 349
EcoT14I	CCWWGG	1 cut(s)	295
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	1 cut(s)	131
FaiI	YATR	3 cut(s)	129, 156, 246
FatI	CATG	1 cut(s)	127
Fnu4HI	GCNGC	2 cut(s)	152, 192
Fsp4HI	GCNGC	2 cut(s)	152, 192
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	2 cut(s)	152, 192
GsuI	CTGGAG	1 cut(s)	273
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	1 cut(s)	131
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
Hpy188I	TCNGA	5 cut(s)	34, 52, 81, 99, 333
Hpy188III	TCNNGA	2 cut(s)	12, 290
HpyAV	CCTTC	1 cut(s)	269
HpyCH4V	TGCA	1 cut(s)	194
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 160
HpyF3I	CTNAG	1 cut(s)	78
Hsp92II	CATG	1 cut(s)	131
HspAI	GCGC	1 cut(s)	121
Kzo9I	GATC	3 cut(s)	14, 61, 333
LmnI	GCTCC	2 cut(s)	35, 365
LpnPI	CCDG	8 cut(s)	3, 51, 78, 149, 182, 303, 336, 363
Lsp1109I	GCAGC	2 cut(s)	163, 178
MalI	GATC	3 cut(s)	16, 63, 335
MboI	GATC	3 cut(s)	14, 61, 333
MboII	GAAGA	1 cut(s)	69
MflI	RGATCY	2 cut(s)	14, 61
MluCI	AATT	3 cut(s)	46, 173, 327
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	7 cut(s)	19, 46, 53, 139, 175, 234, 237
MseI	TTAA	3 cut(s)	90, 255, 318
MslI	CAYNNNNRTG	1 cut(s)	269
MspR9I	CCNGG	2 cut(s)	66, 351
MvaI	CCWGG	2 cut(s)	66, 351
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	2 cut(s)	27, 160
NdeII	GATC	3 cut(s)	14, 61, 333
NlaIII	CATG	1 cut(s)	131
NlaIV	GGNNCC	1 cut(s)	31
OliI	CACNNNNGTG	1 cut(s)	269
PfoI	TCCNGGA	1 cut(s)	349
PkrI	GCNGC	2 cut(s)	153, 193
Psp6I	CCWGG	2 cut(s)	64, 349
PspGI	CCWGG	2 cut(s)	64, 349
PspN4I	GGNNCC	1 cut(s)	31
PsuI	RGATCY	2 cut(s)	14, 61
RseI	CAYNNNNRTG	1 cut(s)	269
SaqAI	TTAA	3 cut(s)	90, 255, 318
SatI	GCNGC	2 cut(s)	152, 192
Sau3AI	GATC	3 cut(s)	14, 61, 333
ScrFI	CCNGG	2 cut(s)	66, 351
SetI	ASST	7 cut(s)	45, 165, 193, 219, 229, 245, 370
SmiMI	CAYNNNNRTG	1 cut(s)	269
Sse9I	AATT	3 cut(s)	46, 173, 327
StyD4I	CCNGG	2 cut(s)	64, 349
StyI	CCWWGG	1 cut(s)	295
TaqI	TCGA	1 cut(s)	336
TasI	AATT	3 cut(s)	46, 173, 327
Tru1I	TTAA	3 cut(s)	90, 255, 318
Tru9I	TTAA	3 cut(s)	90, 255, 318
TscAI	CASTG	3 cut(s)	201, 271, 316
TseI	GCWGC	2 cut(s)	151, 191
TspDTI	ATGAA	1 cut(s)	116
TspRI	CASTG	3 cut(s)	201, 271, 316
XapI	RAATTY	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.