Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Reverse (-)

7199993 .. 7202488

Gene Structure 2496 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG087500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGAGCGCCGACAAGGATAACAACATCAACATGGCCGATCTCGCCACCGCTTTGAAGGAAGAGAACCAGGAAGGAATCCTCAACGCGCTTAAGGGTTTAGCTGGTGGTCAGCATGTCGAGGAAGTCCTCAGCAGTTTATCTCCTAATGTCCGGAAGCGTGTTGATTTTCTTAGGGAAATCCAGCGTTACGAGATTGTGACTGGTGCTGTTGAAGCTGAAGGAGTTACTACTGAAGCATCCACAAATGAAGAGGATGCTGAAGACAAAGGAGTGCCTGATTTCTGGCTGAATGCATTGAAAAACAATGATGTGCTCTCCGAGGAGATAACAGAGCGTGATGAAGGAGCTCTAAAATATCTGAAGGACATCAAGTGGGCTAGGATAGATAACCCTAAGGGATTCAAACTTGAGTTCTACTTTGACACCAATCCATATTTCAAGAACACTGTCTTGACGAAGACATATCACATGATTGATGAAGATGAACCTATTCTTGAGAAGGCAATTGGAACTGAAATCGAGTGGTATCCGGGAAAGTGCTTAACACAGAAGCTCCTTAAGAAGAAGCCTAAGAAGGGATCAAAGAACAATAAGCCAATCACAAAAACTGAAGATTGTGAGAGCTTCTTCAACTTTTTCAGTCCACCCCAAGTCCCTGAAGAGGATGAAGATCTTGATGAAGATGCTGCTGAGGAACTCCAGAATCAGATGGAACAAGATTATGATGTTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

244

Amino Acids

27.79

Weight (kDa)

4.49

Isoelectric Point (pI)

41.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	61 - 244	4.7e-63	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	86
AccIII	TCCGGA	1 cut(s)	150
AciI	CCGC	1 cut(s)	48
AclWI	GGATC	1 cut(s)	586
AcoI	YGGCCR	1 cut(s)	33
AcuI	CTGAAG	6 cut(s)	237, 252, 279, 380, 630, 678
AfiI	CCNNNNNNNGG	2 cut(s)	575, 661
AflII	CTTAAG	2 cut(s)	89, 557
AgsI	TTSAA	6 cut(s)	55, 212, 298, 403, 439, 631
AjnI	CCWGG	1 cut(s)	66
AjuI	GAANNNNNNNTTGG	2 cut(s)	419, 451
AluBI	AGCT	5 cut(s)	101, 215, 347, 553, 624
AluI	AGCT	5 cut(s)	101, 215, 347, 553, 624
Alw21I	GWGCWC	2 cut(s)	315, 349
AlwI	GGATC	1 cut(s)	586
Aor13HI	TCCGGA	1 cut(s)	150
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	1 cut(s)	686
Asp700I	GAANNNNTTC	1 cut(s)	489
AspLEI	GCGC	2 cut(s)	8, 88
AsuC2I	CCSGG	1 cut(s)	531
AxyI	CCTNAGG	1 cut(s)	393
BanII	GRGCYC	1 cut(s)	349
BbsI	GAAGAC	2 cut(s)	267, 464
Bbv12I	GWGCWC	2 cut(s)	315, 349
BbvCI	CCTCAGC	2 cut(s)	128, 690
BbvI	GCAGC	1 cut(s)	673
BccI	CCATC	1 cut(s)	703
BciT130I	CCWGG	1 cut(s)	68
BciVI	GTATCC	1 cut(s)	537
BcnI	CCSGG	1 cut(s)	531
BfaI	CTAG	1 cut(s)	378
BfoI	RGCGCY	1 cut(s)	9
BfrI	CTTAAG	2 cut(s)	89, 557
BfuI	GTATCC	1 cut(s)	537
BglII	AGATCT	1 cut(s)	670
BisI	GCNGC	1 cut(s)	687
BlsI	GCNGC	1 cut(s)	688
Bme1390I	CCNGG	2 cut(s)	68, 531
BmrFI	CCNGG	2 cut(s)	68, 531
BmsI	GCATC	3 cut(s)	244, 245, 673
BpiI	GAAGAC	2 cut(s)	267, 464
BpmI	CTGGAG	1 cut(s)	683
Bpu10I	CCTNAGC	2 cut(s)	128, 690
BpuEI	CTTGAG	2 cut(s)	428, 515
BpuMI	CCSGG	1 cut(s)	531
BsaBI	GATNNNNATC	1 cut(s)	669
BsaJI	CCNNGG	1 cut(s)	318
BsaWI	WCCGGW	1 cut(s)	150
BsaXI	ACNNNNNCTCC	2 cut(s)	537, 567
Bsc4I	CCNNNNNNNGG	2 cut(s)	575, 661
Bse1I	ACTGG	1 cut(s)	205
Bse21I	CCTNAGG	1 cut(s)	393
Bse8I	GATNNNNATC	1 cut(s)	669
BseAI	TCCGGA	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	68
BseDI	CCNNGG	1 cut(s)	318
BseGI	GGATG	3 cut(s)	236, 259, 670
BseJI	GATNNNNATC	1 cut(s)	669
BseLI	CCNNNNNNNGG	2 cut(s)	575, 661
BseMII	CTCAG	2 cut(s)	142, 681
BseNI	ACTGG	1 cut(s)	205
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	1 cut(s)	673
Bsh1236I	CGCG	1 cut(s)	86
BshFI	GGCC	1 cut(s)	35
BsiHKAI	GWGCWC	2 cut(s)	315, 349
BsiSI	CCGG	2 cut(s)	151, 530
BslFI	GGGAC	1 cut(s)	638
BslI	CCNNNNNNNGG	2 cut(s)	575, 661
BsmFI	GGGAC	1 cut(s)	638
BsmI	GAATGC	1 cut(s)	295
BsnI	GGCC	1 cut(s)	35
Bsp1286I	GDGCHC	2 cut(s)	315, 349
Bsp13I	TCCGGA	1 cut(s)	150
Bsp143I	GATC	3 cut(s)	37, 578, 670
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	2 cut(s)	141, 682
BspEI	TCCGGA	1 cut(s)	150
BspFNI	CGCG	1 cut(s)	86
BspPI	GGATC	1 cut(s)	586
BspTI	CTTAAG	2 cut(s)	89, 557
BsrI	ACTGG	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	3 cut(s)	37, 578, 670
Bst2UI	CCWGG	1 cut(s)	68
Bst4CI	ACNGT	1 cut(s)	448
Bst6I	CTCTTC	3 cut(s)	54, 243, 654
BstAFI	CTTAAG	2 cut(s)	89, 557
BstDEI	CTNAG	5 cut(s)	128, 170, 393, 570, 690
BstF5I	GGATG	3 cut(s)	236, 259, 670
BstFNI	CGCG	1 cut(s)	86
BstH2I	RGCGCY	1 cut(s)	9
BstHHI	GCGC	2 cut(s)	8, 88
BstKTI	GATC	3 cut(s)	40, 581, 673
BstMBI	GATC	3 cut(s)	37, 578, 670
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 212
BstNI	CCWGG	1 cut(s)	68
BstNSI	RCATGY	1 cut(s)	116
BstSCI	CCNGG	2 cut(s)	66, 529
BstUI	CGCG	1 cut(s)	86
BstV1I	GCAGC	1 cut(s)	673
BstV2I	GAAGAC	2 cut(s)	267, 464
BstX2I	RGATCY	1 cut(s)	670
BstYI	RGATCY	1 cut(s)	670
Bsu36I	CCTNAGG	1 cut(s)	393
BsuI	GTATCC	1 cut(s)	537
BsuRI	GGCC	1 cut(s)	35
BtsCI	GGATG	3 cut(s)	236, 259, 670
BtsIMutI	CAGTG	1 cut(s)	444
CfoI	GCGC	2 cut(s)	8, 88
CviAII	CATG	3 cut(s)	31, 113, 469
DdeI	CTNAG	5 cut(s)	128, 170, 393, 570, 690
DpnI	GATC	3 cut(s)	39, 580, 672
DpnII	GATC	3 cut(s)	37, 578, 670
EaeI	YGGCCR	1 cut(s)	33
Eam1104I	CTCTTC	3 cut(s)	54, 243, 654
EarI	CTCTTC	3 cut(s)	54, 243, 654
Ecl136II	GAGCTC	1 cut(s)	347
Eco24I	GRGCYC	1 cut(s)	349
Eco53kI	GAGCTC	1 cut(s)	347
Eco57I	CTGAAG	6 cut(s)	237, 252, 279, 380, 630, 678
Eco81I	CCTNAGG	1 cut(s)	393
EcoICRI	GAGCTC	1 cut(s)	347
EcoRII	CCWGG	1 cut(s)	66
EcoT22I	ATGCAT	1 cut(s)	295
EcoT38I	GRGCYC	1 cut(s)	349
FaeI	CATG	3 cut(s)	34, 116, 472
FaiI	YATR	6 cut(s)	32, 114, 433, 463, 470, 723
FaqI	GGGAC	1 cut(s)	638
FatI	CATG	3 cut(s)	30, 112, 468
Fnu4HI	GCNGC	1 cut(s)	687
FokI	GGATG	3 cut(s)	223, 266, 677
FriOI	GRGCYC	1 cut(s)	349
Fsp4HI	GCNGC	1 cut(s)	687
FspBI	CTAG	1 cut(s)	378
GlaI	GCGC	2 cut(s)	7, 87
GluI	GCNGC	1 cut(s)	687
GsuI	CTGGAG	1 cut(s)	683
HaeII	RGCGCY	1 cut(s)	9
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	2 cut(s)	151, 530
HhaI	GCGC	2 cut(s)	8, 88
Hin1II	CATG	3 cut(s)	34, 116, 472
Hin6I	GCGC	2 cut(s)	6, 86
HinP1I	GCGC	2 cut(s)	6, 86
HinfI	GANTC	3 cut(s)	75, 399, 703
HpaII	CCGG	2 cut(s)	151, 530
Hpy166II	GTNNAC	1 cut(s)	644
Hpy188I	TCNGA	3 cut(s)	319, 360, 708
Hpy188III	TCNNGA	6 cut(s)	151, 439, 451, 494, 674, 700
Hpy8I	GTNNAC	1 cut(s)	644
HpyAV	CCTTC	7 cut(s)	49, 65, 212, 335, 355, 493, 568
HpyCH4III	ACNGT	1 cut(s)	448
HpyCH4V	TGCA	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 212
HpyF3I	CTNAG	5 cut(s)	128, 170, 393, 570, 690
Hsp92II	CATG	3 cut(s)	34, 116, 472
HspAI	GCGC	2 cut(s)	6, 86
Kpn2I	TCCGGA	1 cut(s)	150
Kzo9I	GATC	3 cut(s)	37, 578, 670
LmnI	GCTCC	2 cut(s)	344, 558
Lsp1109I	GCAGC	1 cut(s)	673
LweI	GCATC	3 cut(s)	244, 245, 673
MaeI	CTAG	1 cut(s)	378
MaeIII	GTNAC	3 cut(s)	185, 196, 223
MalI	GATC	3 cut(s)	39, 580, 672
MboI	GATC	3 cut(s)	37, 578, 670
MfeI	CAATTG	1 cut(s)	504
MflI	RGATCY	1 cut(s)	670
MhlI	GDGCHC	2 cut(s)	315, 349
MluCI	AATT	1 cut(s)	504
MnlI	CCTC	7 cut(s)	89, 112, 137, 244, 313, 655, 685
Mph1103I	ATGCAT	1 cut(s)	295
MroI	TCCGGA	1 cut(s)	150
MroXI	GAANNNNTTC	1 cut(s)	489
MseI	TTAA	3 cut(s)	90, 542, 558
MslI	CAYNNNNRTG	1 cut(s)	29
MspCI	CTTAAG	2 cut(s)	89, 557
MspI	CCGG	2 cut(s)	151, 530
MspR9I	CCNGG	2 cut(s)	68, 531
MunI	CAATTG	1 cut(s)	504
Mva1269I	GAATGC	1 cut(s)	295
MvaI	CCWGG	1 cut(s)	68
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	2 cut(s)	41, 212
NciI	CCSGG	1 cut(s)	531
NdeII	GATC	3 cut(s)	37, 578, 670
NlaIII	CATG	3 cut(s)	34, 116, 472
NmuCI	GTSAC	1 cut(s)	196
NsiI	ATGCAT	1 cut(s)	295
NspI	RCATGY	1 cut(s)	116
PctI	GAATGC	1 cut(s)	295
PdmI	GAANNNNTTC	1 cut(s)	489
PfeI	GAWTC	3 cut(s)	75, 399, 703
PfoI	TCCNGGA	1 cut(s)	529
PkrI	GCNGC	1 cut(s)	688
Psp124BI	GAGCTC	1 cut(s)	349
Psp6I	CCWGG	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	66
PsuI	RGATCY	1 cut(s)	670
RseI	CAYNNNNRTG	1 cut(s)	29
SacI	GAGCTC	1 cut(s)	349
SaqAI	TTAA	3 cut(s)	90, 542, 558
SatI	GCNGC	1 cut(s)	687
Sau3AI	GATC	3 cut(s)	37, 578, 670
ScrFI	CCNGG	2 cut(s)	68, 531
SduI	GDGCHC	2 cut(s)	315, 349
SetI	ASST	6 cut(s)	103, 217, 349, 490, 555, 626
SfaNI	GCATC	3 cut(s)	244, 245, 673
SmiMI	CAYNNNNRTG	1 cut(s)	29
SmlI	CTYRAG	4 cut(s)	89, 407, 494, 557
SmoI	CTYRAG	4 cut(s)	89, 407, 494, 557
Sse9I	AATT	1 cut(s)	504
SsiI	CCGC	1 cut(s)	48
SspMI	CTAG	1 cut(s)	378
SstI	GAGCTC	1 cut(s)	349
StyD4I	CCNGG	2 cut(s)	66, 529
TaaI	ACNGT	1 cut(s)	448
TaqI	TCGA	2 cut(s)	117, 519
TasI	AATT	1 cut(s)	504
TfiI	GAWTC	3 cut(s)	75, 399, 703
Tru1I	TTAA	3 cut(s)	90, 542, 558
Tru9I	TTAA	3 cut(s)	90, 542, 558
TscAI	CASTG	1 cut(s)	451
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	1 cut(s)	686
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	6 cut(s)	261, 354, 492, 498, 681, 693
TspRI	CASTG	1 cut(s)	451
Vha464I	CTTAAG	2 cut(s)	89, 557
XceI	RCATGY	1 cut(s)	116
XmnI	GAANNNNTTC	1 cut(s)	489
XspI	CTAG	1 cut(s)	378
Zsp2I	ATGCAT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.