Rroxscaffold_1G00016760

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000381
Physical Location & Seq
Reverse (-)
20725357 .. 20747865
22509 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00016760.1

Sequence Viewer

Length: 1869 bp
ATGAGGCCTTTGAGCAATGCAAGTGCTTCTGCATCTCATCCCTTACCTGTTAGACCAGATCCTCAGCTCTTGGAAGATTCTGAATCAACGCAACCTAAGGATGATCTAGTACGCTTCCATTTCTTGAAGCAACCCAAGCCATGGATCACCTACACAAGCAGTTGTAAGTTACTAGGTTTTTCCATCTCTTTTCAGTCATCAGTTTCTACGTACCAGCGTACCATCTCGGATGACCAAGGGCTGCAAGCAGGGATGTCAATTTCTCCAAGTCTCCTCAGGGCGATTGAAGAATCAAAGCTGGCAATTGTTGAGTTGTCGCCAAACTACGCTTCTTCTCCATGGTGTTTGGATGAGCTTACACATATATTTCAATTCATGGAAGGCAGAGACAGAATTCTGCCAATTTTTTATCATGTGGACCCAGCTGATGTACGGCATCAAAGGGGGAGTTTTGCAACAGCTTTCACTAGTTATGAAAGAAAGTCTAGGCAAAGCGAAGAAAAGTTGCATCAGTGGAGAGTTACCTTAAGACAAGTGGCCAATATCTCTGGGTGGAATACAAAGAACTTTGGCTCACCGCCGCCGCTACAGGCCGCGCCGCCGTGCAAGGCCACCACAGACAGTGCGCAAGGACCATACGAAGCTAATGGAAGAAGTTTGGTGAAGATTGATGGCCGGAGGAGGAAGATATGGCCAACTGAAAATTTTGGGCGATTTCCCGAGCTGCTGCAGCCGTACCGTTTGGCTGCAATCGGCTCGGCTACGTATGAAGCTCTACATACTATCTCCAACACCACTTCCTCAACTCATCAACATGGAACCACGCACTCTGCAACTAATGGAGCTTCAAACCCAGCAACAAATGGAATTACAAGCCCAGCAACCAGCCGAGGAGGGAGGAAGCAACCAAGCATCCGGAGTAGTGCCAATATGCCCGTCGGTGCAGCCAAATACTCGCTCGCCGCCGCCGCCACGGCCGCGCCGCCGTGCAAGGCCACCACGGACAGTGCGCAAGGACCATACGAAGCTAATGGAAGAAGTTTGGTGAAGATTGATGGCCGGGGGAGGAAGATATGGCCAACTGAAAATTTTGGGCGATTTCCCGAGCTGCTGCAGAGCCTACCTCATAATGTTAGAAAGCGGCTTGAGGTCATGAGAGAAATTGAGAGTCAACGTGATGAATTAGAGGCCAAGTTTTTCAAGGATAAAGCTGAACTTGAAGCCAAGTATCAGAAATTATATCAGACTCTCTACAGCAGGCGATACTTGATTGTGAATGGTGTTGTTGAAACTGAAGGAGTTGCCCCTGAAACAACAACAGATCATGAGAACAAAACTGCAAAAGAGAGAGGAGTGCCTGATTTCTGGCTGAATGCATTGAAGAACAATGCAGTGCTAGCCGAGGAGATTACCGAGTGTGATGAAGGAGCTCTTAAATATCTTAGAGACATCAAGTGTTTTAAGATACATAATTCCAAGGGGTTCAAGATTGAGTTCGACTTCGACACCAATCCATTTTTCAAAAACTCTGTTTTGACAAAGACATACATGATTGATGAAGATGAACCAAACAGCACAGCAGGGACGGAGATTGAATGGCATCCAGCAAAATACCTGACACAGAAGATTGTTAAGAAGAAGCATAAGAAGGGATCAAAGAATTCTAAGCTTCTGACTAAAACTAAAAATTGTAAAAGTTTCTTCAATTTCTTCAGTCCACCTCAAGTATCCAAGGACGATGAAGTTATTGATGAAGTTGCTGCCGAGGAACTCAAAAACCAGAAGAAACAAGACTATGATGTTGGGTCAACCATATGTTATAAGATCATCCCACATGCAGTTTCGTGGTATACTGGAGAAGCTTTTTAG

Protein Analysis

622

Amino Acids

69.83

Weight (kDa)

8.98

Isoelectric Point (pI)

47.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 75 - 190 1.6e-28 TIR domain
TIR_2 PF13676 77 - 142 1.7e-08 TIR domain
NAP PF00956 380 - 620 8.7e-73 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000381)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1821
Acc16I TGCGCA 2 cut(s) 627, 1011
AccB7I CCANNNNNTGG 1 cut(s) 141
AccI GTMKAC 1 cut(s) 1850
AccII CGCG 2 cut(s) 596, 980
AccIII TCCGGA 1 cut(s) 915
AclWI GGATC 3 cut(s) 53, 152, 1660
AcoI YGGCCR 6 cut(s) 537, 673, 692, 975, 1057, 1076
AcsI RAATTY 4 cut(s) 393, 703, 1087, 1660
AcuI CTGAAG 2 cut(s) 1314, 1696
AfaI GTAC 5 cut(s) 111, 212, 220, 432, 737
AfiI CCNNNNNNNGG 1 cut(s) 141
AflII CTTAAG 1 cut(s) 526
AhlI ACTAGT 1 cut(s) 467
AjuI GAANNNNNNNTTGG 4 cut(s) 313, 345, 1502, 1534
Alw21I GWGCWC 1 cut(s) 1432
Alw26I GTCTC 3 cut(s) 275, 381, 1440
AlwI GGATC 3 cut(s) 53, 152, 1660
Ama87I CYCGRG 2 cut(s) 719, 1103
Aor13HI TCCGGA 1 cut(s) 915
ApeKI GCWGC 9 cut(s) 241, 724, 727, 730, 746, 944, 1108, 1111, 1760
ApoI RAATTY 4 cut(s) 393, 703, 1087, 1660
AspLEI GCGC 4 cut(s) 598, 628, 982, 1012
AspS9I GGNCC 3 cut(s) 418, 632, 1016
AsuC2I CCSGG 1 cut(s) 1061
AsuHPI GGTGA 4 cut(s) 139, 567, 673, 1057
AsuNHI GCTAGC 1 cut(s) 1396
AvaI CYCGRG 2 cut(s) 719, 1103
AvaII GGWCC 3 cut(s) 418, 632, 1016
AxyI CCTNAGG 2 cut(s) 96, 275
BaeI ACNNNNGTAYC 2 cut(s) 202, 235
BalI TGGCCA 3 cut(s) 539, 694, 1078
BanII GRGCYC 1 cut(s) 1432
Bbv12I GWGCWC 1 cut(s) 1432
BbvCI CCTCAGC 1 cut(s) 63
BbvI GCAGC 9 cut(s) 228, 711, 714, 733, 742, 956, 1095, 1098, 1747
BccI CCATC 4 cut(s) 191, 230, 665, 1049
BceAI ACGGC 5 cut(s) 449, 586, 718, 970, 990
BcgI CGANNNNNNTGC 2 cut(s) 738, 772
BciVI GTATCC 1 cut(s) 1738
BcnI CCSGG 1 cut(s) 1061
BcoDI GTCTC 3 cut(s) 275, 381, 1440
BcuI ACTAGT 1 cut(s) 467
BfaI CTAG 5 cut(s) 107, 173, 468, 486, 1397
BfmI CTRYAG 4 cut(s) 587, 728, 1112, 1252
BfrI CTTAAG 1 cut(s) 526
BfuI GTATCC 1 cut(s) 1738
BglI GCCNNNNNGGC 1 cut(s) 974
Bme1390I CCNGG 1 cut(s) 1061
Bme18I GGWCC 3 cut(s) 418, 632, 1016
BmeT110I CYCGRG 2 cut(s) 719, 1103
BmgT120I GGNCC 3 cut(s) 418, 632, 1016
BmiI GGNNCC 2 cut(s) 420, 820
BmrFI CCNGG 1 cut(s) 1061
BmsI GCATC 5 cut(s) 41, 445, 517, 921, 1609
BmtI GCTAGC 1 cut(s) 1400
BplI GAGNNNNNCTC 2 cut(s) 1108, 1140
Bpu10I CCTNAGC 1 cut(s) 63
BpuEI CTTGAG 2 cut(s) 1166, 1707
BpuMI CCSGG 1 cut(s) 1061
BsaAI YACGTR 2 cut(s) 210, 765
BsaWI WCCGGW 1 cut(s) 915
Bsc4I CCNNNNNNNGG 1 cut(s) 141
Bse1I ACTGG 1 cut(s) 1858
Bse21I CCTNAGG 2 cut(s) 96, 275
Bse3DI GCAATG 1 cut(s) 22
BseAI TCCGGA 1 cut(s) 915
BseGI GGATG 8 cut(s) 37, 106, 235, 258, 355, 912, 1600, 1827
BseLI CCNNNNNNNGG 1 cut(s) 141
BseMI GCAATG 1 cut(s) 22
BseMII CTCAG 2 cut(s) 77, 289
BseNI ACTGG 1 cut(s) 1858
BseRI GAGGAG 5 cut(s) 263, 694, 906, 1365, 1418
BseX3I CGGCCG 1 cut(s) 975
BseXI GCAGC 9 cut(s) 228, 711, 714, 733, 742, 956, 1095, 1098, 1747
BseYI CCCAGC 3 cut(s) 421, 853, 877
BsgI GTGCAG 1 cut(s) 963
Bsh1236I CGCG 2 cut(s) 596, 980
Bsh1285I CGRYCG 1 cut(s) 978
BsiEI CGRYCG 1 cut(s) 978
BsiHKAI GWGCWC 1 cut(s) 1432
BsiHKCI CYCGRG 2 cut(s) 719, 1103
BsiSI CCGG 3 cut(s) 676, 916, 1060
BslFI GGGAC 1 cut(s) 1597
BslI CCNNNNNNNGG 1 cut(s) 141
BsmAI GTCTC 3 cut(s) 275, 381, 1440
BsmFI GGGAC 1 cut(s) 1597
BsmI GAATGC 1 cut(s) 1378
BsoBI CYCGRG 2 cut(s) 719, 1103
Bsp1286I GDGCHC 1 cut(s) 1432
Bsp13I TCCGGA 1 cut(s) 915
Bsp143I GATC 6 cut(s) 58, 103, 144, 1321, 1652, 1824
Bsp19I CCATGG 2 cut(s) 140, 338
BspCNI CTCAG 2 cut(s) 76, 288
BspEI TCCGGA 1 cut(s) 915
BspFNI CGCG 2 cut(s) 596, 980
BspHI TCATGA 2 cut(s) 1152, 1324
BspLI GGNNCC 2 cut(s) 420, 820
BspMAI CTGCAG 2 cut(s) 732, 1116
BspOI GCTAGC 1 cut(s) 1400
BspPI GGATC 3 cut(s) 53, 152, 1660
BspTI CTTAAG 1 cut(s) 526
BsrDI GCAATG 1 cut(s) 22
BsrI ACTGG 1 cut(s) 1858
BssMI GATC 6 cut(s) 58, 103, 144, 1321, 1652, 1824
BssNAI GTATAC 1 cut(s) 1851
BssT1I CCWWGG 5 cut(s) 140, 235, 338, 1476, 1731
Bst1107I GTATAC 1 cut(s) 1851
Bst4CI ACNGT 3 cut(s) 623, 740, 1007
BstAFI CTTAAG 1 cut(s) 526
BstBAI YACGTR 2 cut(s) 210, 765
BstC8I GCNNGC 5 cut(s) 246, 300, 960, 1259, 1398
BstDEI CTNAG 5 cut(s) 63, 96, 275, 1442, 1665
BstDSI CCRYGG 4 cut(s) 140, 338, 972, 999
BstF5I GGATG 8 cut(s) 37, 106, 235, 258, 355, 912, 1600, 1827
BstFNI CGCG 2 cut(s) 596, 980
BstHHI GCGC 4 cut(s) 598, 628, 982, 1012
BstKTI GATC 6 cut(s) 61, 106, 147, 1324, 1655, 1827
BstMAI GTCTC 3 cut(s) 275, 381, 1440
BstMBI GATC 6 cut(s) 58, 103, 144, 1321, 1652, 1824
BstMCI CGRYCG 1 cut(s) 978
BstMWI GCNNNNNNNGC 6 cut(s) 136, 730, 968, 974, 977, 1397
BstNSI RCATGY 1 cut(s) 1838
BstSCI CCNGG 1 cut(s) 1059
BstSFI CTRYAG 4 cut(s) 587, 728, 1112, 1252
BstSNI TACGTA 2 cut(s) 210, 765
BstUI CGCG 2 cut(s) 596, 980
BstV1I GCAGC 9 cut(s) 228, 711, 714, 733, 742, 956, 1095, 1098, 1747
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
BstZ17I GTATAC 1 cut(s) 1851
BstZI CGGCCG 1 cut(s) 975
Bsu36I CCTNAGG 2 cut(s) 96, 275
BsuI GTATCC 1 cut(s) 1738
BtgI CCRYGG 4 cut(s) 140, 338, 972, 999
BtsCI GGATG 8 cut(s) 37, 106, 235, 258, 355, 912, 1600, 1827
BtsI GCAGTG 1 cut(s) 1398
BtsIMutI CAGTG 4 cut(s) 518, 628, 1012, 1398
Cac8I GCNNGC 5 cut(s) 246, 300, 960, 1259, 1398
CciI TCATGA 2 cut(s) 1152, 1324
CfoI GCGC 4 cut(s) 598, 628, 982, 1012
Cfr13I GGNCC 3 cut(s) 418, 632, 1016
Csp6I GTAC 5 cut(s) 110, 211, 219, 431, 736
CviAII CATG 9 cut(s) 141, 339, 376, 413, 815, 1153, 1325, 1549, 1835
CviQI GTAC 5 cut(s) 110, 211, 219, 431, 736
DdeI CTNAG 5 cut(s) 63, 96, 275, 1442, 1665
DpnI GATC 6 cut(s) 60, 105, 146, 1323, 1654, 1826
DpnII GATC 6 cut(s) 58, 103, 144, 1321, 1652, 1824
EaeI YGGCCR 6 cut(s) 537, 673, 692, 975, 1057, 1076
EagI CGGCCG 1 cut(s) 975
Ecl136II GAGCTC 1 cut(s) 1430
EclXI CGGCCG 1 cut(s) 975
Eco105I TACGTA 2 cut(s) 210, 765
Eco130I CCWWGG 5 cut(s) 140, 235, 338, 1476, 1731
Eco147I AGGCCT 1 cut(s) 7
Eco24I GRGCYC 1 cut(s) 1432
Eco47I GGWCC 3 cut(s) 418, 632, 1016
Eco52I CGGCCG 1 cut(s) 975
Eco53kI GAGCTC 1 cut(s) 1430
Eco57I CTGAAG 2 cut(s) 1314, 1696
Eco81I CCTNAGG 2 cut(s) 96, 275
Eco88I CYCGRG 2 cut(s) 719, 1103
EcoICRI GAGCTC 1 cut(s) 1430
EcoRI GAATTC 2 cut(s) 393, 1660
EcoT14I CCWWGG 5 cut(s) 140, 235, 338, 1476, 1731
EcoT22I ATGCAT 1 cut(s) 1378
EcoT38I GRGCYC 1 cut(s) 1432
ErhI CCWWGG 5 cut(s) 140, 235, 338, 1476, 1731
FaeI CATG 9 cut(s) 144, 342, 379, 416, 818, 1156, 1328, 1552, 1838
FalI AAGNNNNNCTT 4 cut(s) 1200, 1232, 1416, 1448
FaqI GGGAC 1 cut(s) 1597
FatI CATG 9 cut(s) 140, 338, 375, 412, 814, 1152, 1324, 1548, 1834
FauNDI CATATG 1 cut(s) 1814
FblI GTMKAC 1 cut(s) 1850
FokI GGATG 8 cut(s) 24, 113, 242, 265, 362, 899, 1587, 1814
FriOI GRGCYC 1 cut(s) 1432
FspBI CTAG 5 cut(s) 107, 173, 468, 486, 1397
FspI TGCGCA 2 cut(s) 627, 1011
GlaI GCGC 4 cut(s) 597, 627, 981, 1011
GsaI CCCAGC 3 cut(s) 425, 857, 881
HapII CCGG 3 cut(s) 676, 916, 1060
HhaI GCGC 4 cut(s) 598, 628, 982, 1012
Hin1II CATG 9 cut(s) 144, 342, 379, 416, 818, 1156, 1328, 1552, 1838
Hin6I GCGC 4 cut(s) 596, 626, 980, 1010
HinP1I GCGC 4 cut(s) 596, 626, 980, 1010
HincII GTYRAC 2 cut(s) 1172, 1809
HindII GTYRAC 2 cut(s) 1172, 1809
HindIII AAGCTT 2 cut(s) 1667, 1860
HinfI GANTC 5 cut(s) 77, 83, 290, 1168, 1246
HpaII CCGG 3 cut(s) 676, 916, 1060
HphI GGTGA 4 cut(s) 139, 567, 673, 1057
Hpy166II GTNNAC 5 cut(s) 418, 1172, 1718, 1809, 1851
Hpy188I TCNGA 5 cut(s) 82, 229, 1233, 1245, 1674
Hpy188III TCNNGA 7 cut(s) 124, 719, 916, 1103, 1153, 1325, 1486
Hpy8I GTNNAC 5 cut(s) 418, 1172, 1718, 1809, 1851
Hpy99I CGWCG 1 cut(s) 941
HpyAV CCTTC 4 cut(s) 374, 1289, 1418, 1642
HpyCH4III ACNGT 3 cut(s) 623, 740, 1007
HpyCH4IV ACGT 3 cut(s) 209, 764, 1174
HpyF10VI GCNNNNNNNGC 6 cut(s) 136, 730, 968, 974, 977, 1397
HpyF3I CTNAG 5 cut(s) 63, 96, 275, 1442, 1665
HpySE526I ACGT 3 cut(s) 209, 764, 1174
Hsp92II CATG 9 cut(s) 144, 342, 379, 416, 818, 1156, 1328, 1552, 1838
HspAI GCGC 4 cut(s) 596, 626, 980, 1010
Kpn2I TCCGGA 1 cut(s) 915
Kzo9I GATC 6 cut(s) 58, 103, 144, 1321, 1652, 1824
LmnI GCTCC 2 cut(s) 842, 1427
Lsp1109I GCAGC 9 cut(s) 228, 711, 714, 733, 742, 956, 1095, 1098, 1747
LweI GCATC 5 cut(s) 41, 445, 517, 921, 1609
MaeI CTAG 5 cut(s) 107, 173, 468, 486, 1397
MaeII ACGT 3 cut(s) 209, 764, 1174
MaeIII GTNAC 2 cut(s) 168, 520
MalI GATC 6 cut(s) 60, 105, 146, 1323, 1654, 1826
MboI GATC 6 cut(s) 58, 103, 144, 1321, 1652, 1824
MfeI CAATTG 1 cut(s) 303
MflI RGATCY 1 cut(s) 58
MhlI GDGCHC 1 cut(s) 1432
MlsI TGGCCA 3 cut(s) 539, 694, 1078
MluNI TGGCCA 3 cut(s) 539, 694, 1078
MlyI GAGTC 2 cut(s) 1177, 1240
MmeI TCCRAC 1 cut(s) 813
Mox20I TGGCCA 3 cut(s) 539, 694, 1078
Mph1103I ATGCAT 1 cut(s) 1378
MroI TCCGGA 1 cut(s) 915
MscI TGGCCA 3 cut(s) 539, 694, 1078
MseI TTAA 4 cut(s) 527, 1434, 1461, 1632
MslI CAYNNNNRTG 1 cut(s) 813
Msp20I TGGCCA 3 cut(s) 539, 694, 1078
MspA1I CMGCKG 1 cut(s) 425
MspCI CTTAAG 1 cut(s) 526
MspI CCGG 3 cut(s) 676, 916, 1060
MspR9I CCNGG 1 cut(s) 1061
MunI CAATTG 1 cut(s) 303
Mva1269I GAATGC 1 cut(s) 1378
MvnI CGCG 2 cut(s) 596, 980
MwoI GCNNNNNNNGC 6 cut(s) 136, 730, 968, 974, 977, 1397
NciI CCSGG 1 cut(s) 1061
NcoI CCATGG 2 cut(s) 140, 338
NdeI CATATG 1 cut(s) 1814
NdeII GATC 6 cut(s) 58, 103, 144, 1321, 1652, 1824
NheI GCTAGC 1 cut(s) 1396
NlaIII CATG 9 cut(s) 144, 342, 379, 416, 818, 1156, 1328, 1552, 1838
NlaIV GGNNCC 2 cut(s) 420, 820
NmeAIII GCCGAG 4 cut(s) 737, 914, 1426, 1789
NsbI TGCGCA 2 cut(s) 627, 1011
NsiI ATGCAT 1 cut(s) 1378
NspI RCATGY 1 cut(s) 1838
PagI TCATGA 2 cut(s) 1152, 1324
PceI AGGCCT 1 cut(s) 7
PctI GAATGC 1 cut(s) 1378
PfeI GAWTC 3 cut(s) 77, 83, 290
PflMI CCANNNNNTGG 1 cut(s) 141
PleI GAGTC 2 cut(s) 1176, 1240
PpsI GAGTC 2 cut(s) 1176, 1240
Ppu21I YACGTR 2 cut(s) 210, 765
PsiI TTATAA 1 cut(s) 1821
Psp124BI GAGCTC 1 cut(s) 1432
PspFI CCCAGC 3 cut(s) 421, 853, 877
PspN4I GGNNCC 2 cut(s) 420, 820
PspPI GGNCC 3 cut(s) 418, 632, 1016
PstI CTGCAG 2 cut(s) 732, 1116
PsuI RGATCY 1 cut(s) 58
PvuII CAGCTG 1 cut(s) 425
RsaI GTAC 5 cut(s) 111, 212, 220, 432, 737
RsaNI GTAC 5 cut(s) 110, 211, 219, 431, 736
RseI CAYNNNNRTG 1 cut(s) 813
SacI GAGCTC 1 cut(s) 1432
SaqAI TTAA 4 cut(s) 527, 1434, 1461, 1632
Sau3AI GATC 6 cut(s) 58, 103, 144, 1321, 1652, 1824
Sau96I GGNCC 3 cut(s) 418, 632, 1016
SchI GAGTC 2 cut(s) 1177, 1240
ScrFI CCNGG 1 cut(s) 1061
SduI GDGCHC 1 cut(s) 1432
SfaNI GCATC 5 cut(s) 41, 445, 517, 921, 1609
SfcI CTRYAG 4 cut(s) 587, 728, 1112, 1252
SinI GGWCC 3 cut(s) 418, 632, 1016
SmiMI CAYNNNNRTG 1 cut(s) 813
SmlI CTYRAG 3 cut(s) 526, 1145, 1722
SmoI CTYRAG 3 cut(s) 526, 1145, 1722
SnaBI TACGTA 2 cut(s) 210, 765
SpeI ACTAGT 1 cut(s) 467
SseBI AGGCCT 1 cut(s) 7
SspMI CTAG 5 cut(s) 107, 173, 468, 486, 1397
SstI GAGCTC 1 cut(s) 1432
StuI AGGCCT 1 cut(s) 7
StyD4I CCNGG 1 cut(s) 1059
StyI CCWWGG 5 cut(s) 140, 235, 338, 1476, 1731
TaaI ACNGT 3 cut(s) 623, 740, 1007
TaiI ACGT 3 cut(s) 212, 767, 1177
TaqI TCGA 2 cut(s) 1497, 1503
TfiI GAWTC 3 cut(s) 77, 83, 290
Tru1I TTAA 4 cut(s) 527, 1434, 1461, 1632
Tru9I TTAA 4 cut(s) 527, 1434, 1461, 1632
TscAI CASTG 4 cut(s) 518, 628, 1012, 1398
TseI GCWGC 9 cut(s) 241, 724, 727, 730, 746, 944, 1108, 1111, 1760
TspDTI ATGAA 9 cut(s) 364, 489, 783, 1194, 1437, 1572, 1578, 1755, 1767
TspGWI ACGGA 2 cut(s) 1016, 1601
TspRI CASTG 4 cut(s) 518, 628, 1012, 1398
Van91I CCANNNNNTGG 1 cut(s) 141
Vha464I CTTAAG 1 cut(s) 526
VpaK11BI GGWCC 3 cut(s) 418, 632, 1016
XapI RAATTY 4 cut(s) 393, 703, 1087, 1660
XceI RCATGY 1 cut(s) 1838
XmiI GTMKAC 1 cut(s) 1850
XspI CTAG 5 cut(s) 107, 173, 468, 486, 1397
Zsp2I ATGCAT 1 cut(s) 1378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.