Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Reverse (-)

48853325 .. 48859152

Gene Structure 5828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0383200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCTTCCTGTAGCCTAGGGACATCATATACTAAAATTACAAACTTGAACTTGGGTAGAACAAGAGTTGGGATTTCACAATCTTATGGTGCAAGAACTTGGATACTGCAAAGACCGCAGCTTTACTCAGGTTTATCAATATCAAGACGTTCAGAGAAAGTGTTACATGTGCGCAGCGCTCCATCTTTAGAAATCATATCTGCTACAAATTTAGAAGATGGTTCTGAAGAGAGTGATTCTGGTTCAGCAAGCCCGCGCATTCCAAACTTTGATGAGATACAGTCTATGCTTACAACAATATGCGATACAAGTTCAGTTGCAGAGGTCGAGTTAAAACTCGGTGGATTTCAGTTACATGTGGTGAGGGAGTTGACTGAAGAAGGTAGCACTCCACCTCCTCCAATTCCTGCTCCTGTCAGTGCAAGTACACCTGCTGAAGCACCCGAATCAAATGGATCAGTTCCTTCACAATCTTTAGCTATTACTAGACCAGAACCTTCTTCAAGAGATATCCAAACATTATTAGATAAAGCTGCTGATGATGGCTTGGTGTTAATTCAGTCTCCACGAGTGGGGTCATTTAGAAGATCTCGAACAATAAAGGGAAAGCGTGCTCCTCCATCATGTAAAGAGAAGCAAATAGTGAAAGAGGGCCAAGTGATTTGCTACATCGAACAGCTAGGAGGAGAGCTTCCAATTGAGTCTGATGTGGCTGGGGAGGTCATCAAGATACTACGGGAAGATGGTGAACCTGTTGGATATGGTGATGCTCTGATTGCAGTTCTCCCCTCGTTTCCTGGGATTAAGAAGCTTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

272

Amino Acids

29.13

Weight (kDa)

5.44

Isoelectric Point (pI)

65.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Biotin_lipoyl	PF00364	187 - 259	1.6e-07	Biotin-requiring enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	439
Acc16I	TGCGCA	1 cut(s)	173
Acc36I	ACCTGC	1 cut(s)	439
AccII	CGCG	1 cut(s)	256
AciI	CCGC	2 cut(s)	116, 254
AclWI	GGATC	1 cut(s)	463
AcsI	RAATTY	1 cut(s)	208
AcuI	CTGAAG	3 cut(s)	246, 396, 456
AfaI	GTAC	1 cut(s)	427
AfeI	AGCGCT	1 cut(s)	178
AfiI	CCNNNNNNNGG	1 cut(s)	572
AflIII	ACRYGT	2 cut(s)	166, 355
AgsI	TTSAA	3 cut(s)	49, 504, 815
AjnI	CCWGG	1 cut(s)	796
AluBI	AGCT	6 cut(s)	121, 479, 533, 679, 691, 811
AluI	AGCT	6 cut(s)	121, 479, 533, 679, 691, 811
Alw21I	GWGCWC	1 cut(s)	616
Alw26I	GTCTC	1 cut(s)	567
AlwI	GGATC	1 cut(s)	463
Aor51HI	AGCGCT	1 cut(s)	178
AoxI	GGCC	1 cut(s)	652
ApeKI	GCWGC	3 cut(s)	118, 174, 533
ApoI	RAATTY	1 cut(s)	208
AspA2I	CCTAGG	1 cut(s)	16
AspLEI	GCGC	3 cut(s)	174, 179, 258
AspS9I	GGNCC	1 cut(s)	652
AsuHPI	GGTGA	3 cut(s)	373, 758, 776
AvrII	CCTAGG	1 cut(s)	16
BauI	CACGAG	1 cut(s)	567
Bbv12I	GWGCWC	1 cut(s)	616
BbvI	GCAGC	3 cut(s)	130, 186, 520
BccI	CCATC	5 cut(s)	190, 212, 536, 628, 737
BciT130I	CCWGG	1 cut(s)	798
BciVI	GTATCC	1 cut(s)	96
BcoDI	GTCTC	1 cut(s)	567
BfaI	CTAG	3 cut(s)	17, 486, 680
BfmI	CTRYAG	1 cut(s)	10
BfoI	RGCGCY	1 cut(s)	180
BfuAI	ACCTGC	1 cut(s)	439
BfuI	GTATCC	1 cut(s)	96
BglII	AGATCT	1 cut(s)	587
BisI	GCNGC	3 cut(s)	119, 175, 534
BlnI	CCTAGG	1 cut(s)	16
BlsI	GCNGC	3 cut(s)	120, 176, 535
Bme1390I	CCNGG	1 cut(s)	798
BmgT120I	GGNCC	1 cut(s)	652
BmrFI	CCNGG	1 cut(s)	798
BmsI	GCATC	1 cut(s)	757
BsaJI	CCNNGG	2 cut(s)	16, 797
BsaXI	ACNNNNNCTCC	2 cut(s)	379, 409
Bsc4I	CCNNNNNNNGG	1 cut(s)	572
BseBI	CCWGG	1 cut(s)	798
BseDI	CCNNGG	2 cut(s)	16, 797
BseLI	CCNNNNNNNGG	1 cut(s)	572
BseMII	CTCAG	1 cut(s)	141
BseRI	GAGGAG	3 cut(s)	387, 606, 699
BseXI	GCAGC	3 cut(s)	130, 186, 520
BseYI	CCCAGC	1 cut(s)	713
Bsh1236I	CGCG	1 cut(s)	256
BshFI	GGCC	1 cut(s)	654
BsiHKAI	GWGCWC	1 cut(s)	616
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	572
BsmAI	GTCTC	1 cut(s)	567
BsmFI	GGGAC	1 cut(s)	34
BsmI	GAATGC	1 cut(s)	258
BsnI	GGCC	1 cut(s)	654
Bsp1286I	GDGCHC	1 cut(s)	616
Bsp143I	GATC	2 cut(s)	455, 587
BspACI	CCGC	2 cut(s)	116, 254
BspANI	GGCC	1 cut(s)	654
BspCNI	CTCAG	1 cut(s)	140
BspFNI	CGCG	1 cut(s)	256
BspMI	ACCTGC	1 cut(s)	439
BspPI	GGATC	1 cut(s)	463
BssECI	CCNNGG	2 cut(s)	16, 797
BssMI	GATC	2 cut(s)	455, 587
BssSI	CACGAG	1 cut(s)	567
BssT1I	CCWWGG	1 cut(s)	16
Bst2BI	CACGAG	1 cut(s)	567
Bst2UI	CCWGG	1 cut(s)	798
Bst4CI	ACNGT	1 cut(s)	282
Bst6I	CTCTTC	1 cut(s)	222
BstC8I	GCNNGC	3 cut(s)	250, 254, 612
BstDEI	CTNAG	1 cut(s)	127
BstFNI	CGCG	1 cut(s)	256
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	3 cut(s)	174, 179, 258
BstKTI	GATC	2 cut(s)	458, 590
BstMAI	GTCTC	1 cut(s)	567
BstMBI	GATC	2 cut(s)	455, 587
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 776
BstNI	CCWGG	1 cut(s)	798
BstNSI	RCATGY	2 cut(s)	170, 359
BstSCI	CCNGG	1 cut(s)	796
BstSFI	CTRYAG	1 cut(s)	10
BstUI	CGCG	1 cut(s)	256
BstV1I	GCAGC	3 cut(s)	130, 186, 520
BstX2I	RGATCY	1 cut(s)	587
BstYI	RGATCY	1 cut(s)	587
BsuI	GTATCC	1 cut(s)	96
BsuRI	GGCC	1 cut(s)	654
BtsIMutI	CAGTG	1 cut(s)	424
BveI	ACCTGC	1 cut(s)	439
Cac8I	GCNNGC	3 cut(s)	250, 254, 612
CfoI	GCGC	3 cut(s)	174, 179, 258
Cfr13I	GGNCC	1 cut(s)	652
Csp6I	GTAC	1 cut(s)	426
CviAII	CATG	3 cut(s)	167, 356, 624
CviQI	GTAC	1 cut(s)	426
DdeI	CTNAG	1 cut(s)	127
DpnI	GATC	2 cut(s)	457, 589
DpnII	GATC	2 cut(s)	455, 587
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	16
Eco32I	GATATC	1 cut(s)	511
Eco47III	AGCGCT	1 cut(s)	178
Eco57I	CTGAAG	3 cut(s)	246, 396, 456
EcoRII	CCWGG	1 cut(s)	796
EcoRV	GATATC	1 cut(s)	511
EcoT14I	CCWWGG	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	3 cut(s)	170, 359, 627
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	3 cut(s)	166, 355, 623
FauI	CCCGC	1 cut(s)	261
Fnu4HI	GCNGC	3 cut(s)	119, 175, 534
Fsp4HI	GCNGC	3 cut(s)	119, 175, 534
FspBI	CTAG	3 cut(s)	17, 486, 680
FspI	TGCGCA	1 cut(s)	173
GlaI	GCGC	3 cut(s)	173, 178, 257
GluI	GCNGC	3 cut(s)	119, 175, 534
GsaI	CCCAGC	1 cut(s)	717
HaeII	RGCGCY	1 cut(s)	180
HaeIII	GGCC	1 cut(s)	654
HhaI	GCGC	3 cut(s)	174, 179, 258
Hin1II	CATG	3 cut(s)	170, 359, 627
Hin6I	GCGC	3 cut(s)	172, 177, 256
HinP1I	GCGC	3 cut(s)	172, 177, 256
HincII	GTYRAC	1 cut(s)	372
HindII	GTYRAC	1 cut(s)	372
HindIII	AAGCTT	1 cut(s)	809
HinfI	GANTC	3 cut(s)	236, 446, 701
HphI	GGTGA	3 cut(s)	373, 758, 776
Hpy166II	GTNNAC	3 cut(s)	372, 428, 749
Hpy188I	TCNGA	4 cut(s)	154, 226, 706, 774
Hpy188III	TCNNGA	4 cut(s)	144, 504, 591, 727
Hpy8I	GTNNAC	3 cut(s)	372, 428, 749
HpyAV	CCTTC	3 cut(s)	374, 474, 507
HpyCH4III	ACNGT	1 cut(s)	282
HpyCH4IV	ACGT	1 cut(s)	148
HpyCH4V	TGCA	5 cut(s)	92, 109, 320, 422, 779
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 776
HpyF3I	CTNAG	1 cut(s)	127
HpySE526I	ACGT	1 cut(s)	148
Hsp92II	CATG	3 cut(s)	170, 359, 627
HspAI	GCGC	3 cut(s)	172, 177, 256
Kzo9I	GATC	2 cut(s)	455, 587
LmnI	GCTCC	3 cut(s)	184, 415, 619
Lsp1109I	GCAGC	3 cut(s)	130, 186, 520
LweI	GCATC	1 cut(s)	757
MaeI	CTAG	3 cut(s)	17, 486, 680
MaeII	ACGT	1 cut(s)	148
MaeIII	GTNAC	2 cut(s)	162, 351
MalI	GATC	2 cut(s)	457, 589
MboI	GATC	2 cut(s)	455, 587
MboII	GAAGA	6 cut(s)	227, 239, 389, 492, 597, 752
MfeI	CAATTG	1 cut(s)	696
MflI	RGATCY	1 cut(s)	587
MhlI	GDGCHC	1 cut(s)	616
MluCI	AATT	5 cut(s)	36, 208, 402, 555, 696
MlyI	GAGTC	1 cut(s)	710
MmeI	TCCRAC	1 cut(s)	736
MnlI	CCTC	9 cut(s)	316, 357, 405, 408, 627, 643, 677, 712, 799
MseI	TTAA	3 cut(s)	332, 554, 804
MspR9I	CCNGG	1 cut(s)	798
MteI	GCGCNGCGC	1 cut(s)	175
MunI	CAATTG	1 cut(s)	696
Mva1269I	GAATGC	1 cut(s)	258
MvaI	CCWGG	1 cut(s)	798
MvnI	CGCG	1 cut(s)	256
MwoI	GCNNNNNNNGC	2 cut(s)	115, 776
NdeII	GATC	2 cut(s)	455, 587
NlaIII	CATG	3 cut(s)	170, 359, 627
NsbI	TGCGCA	1 cut(s)	173
NspI	RCATGY	2 cut(s)	170, 359
PaqCI	CACCTGC	1 cut(s)	439
PciI	ACATGT	2 cut(s)	166, 355
PctI	GAATGC	1 cut(s)	258
PfeI	GAWTC	2 cut(s)	236, 446
PkrI	GCNGC	3 cut(s)	120, 176, 535
PleI	GAGTC	1 cut(s)	709
PpsI	GAGTC	1 cut(s)	709
PscI	ACATGT	2 cut(s)	166, 355
Psp6I	CCWGG	1 cut(s)	796
PspFI	CCCAGC	1 cut(s)	713
PspGI	CCWGG	1 cut(s)	796
PspPI	GGNCC	1 cut(s)	652
PsuI	RGATCY	1 cut(s)	587
RsaI	GTAC	1 cut(s)	427
RsaNI	GTAC	1 cut(s)	426
SaqAI	TTAA	3 cut(s)	332, 554, 804
SatI	GCNGC	3 cut(s)	119, 175, 534
Sau3AI	GATC	2 cut(s)	455, 587
Sau96I	GGNCC	1 cut(s)	652
SchI	GAGTC	1 cut(s)	710
ScrFI	CCNGG	1 cut(s)	798
SduI	GDGCHC	1 cut(s)	616
SfaNI	GCATC	1 cut(s)	757
SfcI	CTRYAG	1 cut(s)	10
Sse9I	AATT	5 cut(s)	36, 208, 402, 555, 696
SsiI	CCGC	2 cut(s)	116, 254
SspMI	CTAG	3 cut(s)	17, 486, 680
StyD4I	CCNGG	1 cut(s)	796
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	1 cut(s)	282
TaiI	ACGT	1 cut(s)	151
TaqI	TCGA	3 cut(s)	327, 592, 672
TasI	AATT	5 cut(s)	36, 208, 402, 555, 696
TatI	WGTACW	1 cut(s)	425
TfiI	GAWTC	2 cut(s)	236, 446
Tru1I	TTAA	3 cut(s)	332, 554, 804
Tru9I	TTAA	3 cut(s)	332, 554, 804
TscAI	CASTG	1 cut(s)	424
TseI	GCWGC	3 cut(s)	118, 174, 533
TspRI	CASTG	1 cut(s)	424
XapI	RAATTY	1 cut(s)	208
XceI	RCATGY	2 cut(s)	170, 359
XmaJI	CCTAGG	1 cut(s)	16
XspI	CTAG	3 cut(s)	17, 486, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.