Rh2AG588700

Belongs to the nucleosome assembly protein (NAP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000381
Physical Location & Seq
Reverse (-)
82003518 .. 82006787
3270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG588700.1

Sequence Viewer

Length: 1185 bp
ATGAGTGTTAATATCCAAAGGAAAATATCTGAAGCTTATCAAAAAAAGGGAAGGCAAGTTTCTGAAGAGGTGCTCAAGACACTCACCCAGGAAATGTTGCATTTAGGTCCAAATTTGGCTCCAATTTTTGAACAGGTGCATTCCACCTTGAAAGAAGCAAACAACATCAATGGGTGTATAGAGGAATTAACAAGGATACAGCGGCTACAAAAGATCCACGAAATTGAATTTCTCCAGAAGAGAGCTAAATTGAAGGATGATTACCTGAAGGCTTGTAAAATCGTGCATGAGCGAGGGTGGAACCAATTTTTACTTTCTAAAATGAAGAGAATTGAAATCACTGAACATGATGAAGATGTTCTTAAGCATCTATTAGATATCAGGTGTACATCTGGAAGTCCTAAGGAATTCAAGACTGAGGAAGCTCGGATTCAAATGGAGCGCGATTATTGCATTGGGTCAACGATTCGAGACAACTTTTCTTTCCAGATGGCGCTAGAGGACTGGCGGTTAAAACATCCTGTTAGCTACAGGGCGGAAAAGTATCGTGTCCTAGAACGAGACTTTTTAGATAGAAGAGCAAAATTGGAGGCAAAATACCAAAATTGTTTCCGGGATCTGTACAGGGAGAGGTTTGAGATTGTGAATGGTGTAACTAAAGTTGGAGGACCAAACACTAGAGGAGTGCCGGAGTTTTGGCTTAAAGCAATGAAAAACAATGAAGTCCTTGCTGAGCAGGTGGGGATTTCACAAGCAACGAGGCCGCCCCCCCCCCCCCCCCCCCACACACACACACAGATATATCCTGAGTACCTACAAGACATCCAATGGAGGAGGTCAGAGATCAAATGGCGTCATGATCAAAGCTTGACACATAAGCTTATAGAGAAGCCAGGAAAGAAAGGAAAACCCATTGTCAAAACTTGTCAAAGCTTTTTTAACTTCTTCAGCCGTCGTCCGGATCCTCAAGCCACTGAGGAGAATACTTACAGTGAAGATATTGTTCAGGGGTTTAGAGCCCAGATCAAATATGATTTTTACATTGGTAAAATAATCCGAGACAAAATTATTCCTCATGGAATAGCCTGGTTTACAAAGGAGGCGCTTGAAAATAATAGTGAGTATTATGATTTAGAAGACTACTACAATGAGTCTGAGTCCGAGGACGAGGATGAGGAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAP

Protein Analysis

394

Amino Acids

46.75

Weight (kDa)

6.67

Isoelectric Point (pI)

50.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 180 - 247 1.4e-09 Nucleosome assembly protein (NAP)
NAP PF00956 278 - 367 8.3e-15 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000381)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 727
Acc36I ACCTGC 1 cut(s) 727
AccII CGCG 1 cut(s) 444
AccIII TCCGGA 1 cut(s) 958
AciI CCGC 4 cut(s) 202, 508, 536, 764
AclWI GGATC 4 cut(s) 208, 624, 956, 969
AcsI RAATTY 3 cut(s) 112, 227, 407
AcuI CTGAAG 4 cut(s) 51, 84, 287, 931
AcyI GRCGYC 1 cut(s) 853
AfaI GTAC 3 cut(s) 388, 623, 812
AfiI CCNNNNNNNGG 1 cut(s) 958
AflII CTTAAG 1 cut(s) 362
AgsI TTSAA 8 cut(s) 131, 151, 227, 253, 335, 412, 434, 1109
AjnI CCWGG 3 cut(s) 87, 892, 1085
AluBI AGCT 7 cut(s) 35, 245, 425, 528, 867, 880, 933
AluI AGCT 7 cut(s) 35, 245, 425, 528, 867, 880, 933
Alw21I GWGCWC 1 cut(s) 75
Alw26I GTCTC 3 cut(s) 465, 555, 1053
AlwI GGATC 4 cut(s) 208, 624, 956, 969
Aor13HI TCCGGA 1 cut(s) 958
AoxI GGCC 1 cut(s) 761
ApoI RAATTY 3 cut(s) 112, 227, 407
Asp700I GAANNNNTTC 1 cut(s) 357
AspLEI GCGC 3 cut(s) 444, 496, 1105
AspS9I GGNCC 2 cut(s) 107, 668
AsuC2I CCSGG 1 cut(s) 614
AsuHPI GGTGA 1 cut(s) 76
AvaII GGWCC 2 cut(s) 107, 668
AxyI CCTNAGG 1 cut(s) 402
BamHI GGATCC 1 cut(s) 961
BanII GRGCYC 1 cut(s) 1021
BarI GAAGNNNNNNTAC 2 cut(s) 245, 277
BbsI GAAGAC 1 cut(s) 1143
Bbv12I GWGCWC 1 cut(s) 75
BccI CCATC 1 cut(s) 484
BceAI ACGGC 1 cut(s) 936
BciT130I CCWGG 3 cut(s) 89, 894, 1087
BciVI GTATCC 1 cut(s) 189
BclI TGATCA 1 cut(s) 859
BcnI CCSGG 1 cut(s) 614
BcoDI GTCTC 3 cut(s) 465, 555, 1053
BfaI CTAG 3 cut(s) 497, 554, 678
BfmI CTRYAG 1 cut(s) 529
BfoI RGCGCY 2 cut(s) 497, 1106
BfrI CTTAAG 1 cut(s) 362
BfuAI ACCTGC 1 cut(s) 727
BfuI GTATCC 1 cut(s) 189
BisI GCNGC 2 cut(s) 203, 764
BlpI GCTNAGC 1 cut(s) 732
BlsI GCNGC 2 cut(s) 204, 765
Bme1390I CCNGG 4 cut(s) 89, 614, 894, 1087
Bme18I GGWCC 2 cut(s) 107, 668
BmgT120I GGNCC 2 cut(s) 107, 668
BmiI GGNNCC 3 cut(s) 120, 302, 963
BmrFI CCNGG 4 cut(s) 89, 614, 894, 1087
BmsI GCATC 1 cut(s) 376
BpiI GAAGAC 1 cut(s) 1143
BpmI CTGGAG 1 cut(s) 218
Bpu1102I GCTNAGC 1 cut(s) 732
BpuEI CTTGAG 2 cut(s) 59, 951
BpuMI CCSGG 1 cut(s) 614
BsaHI GRCGYC 1 cut(s) 853
BsaJI CCNNGG 2 cut(s) 87, 1161
BsaWI WCCGGW 1 cut(s) 958
Bsc4I CCNNNNNNNGG 1 cut(s) 958
Bse1I ACTGG 1 cut(s) 509
Bse21I CCTNAGG 1 cut(s) 402
Bse3DI GCAATG 1 cut(s) 714
BseAI TCCGGA 1 cut(s) 958
BseBI CCWGG 3 cut(s) 89, 894, 1087
BseDI CCNNGG 2 cut(s) 87, 1161
BseGI GGATG 4 cut(s) 262, 517, 822, 1177
BseLI CCNNNNNNNGG 1 cut(s) 958
BseMI GCAATG 1 cut(s) 714
BseMII CTCAG 5 cut(s) 408, 723, 798, 966, 1146
BseNI ACTGG 1 cut(s) 509
BseRI GAGGAG 3 cut(s) 696, 847, 992
Bsh1236I CGCG 1 cut(s) 444
BshFI GGCC 1 cut(s) 763
BsiHKAI GWGCWC 1 cut(s) 75
BsiSI CCGG 3 cut(s) 613, 689, 959
BslI CCNNNNNNNGG 1 cut(s) 958
BsmAI GTCTC 3 cut(s) 465, 555, 1053
BsmI GAATGC 1 cut(s) 139
BsnI GGCC 1 cut(s) 763
Bsp1286I GDGCHC 2 cut(s) 75, 1021
Bsp13I TCCGGA 1 cut(s) 958
Bsp1407I TGTACA 2 cut(s) 386, 621
Bsp143I GATC 6 cut(s) 213, 616, 843, 859, 961, 1023
Bsp1720I GCTNAGC 1 cut(s) 732
BspACI CCGC 4 cut(s) 202, 508, 536, 764
BspANI GGCC 1 cut(s) 763
BspCNI CTCAG 5 cut(s) 409, 724, 799, 967, 1147
BspEI TCCGGA 1 cut(s) 958
BspFNI CGCG 1 cut(s) 444
BspHI TCATGA 1 cut(s) 856
BspLI GGNNCC 3 cut(s) 120, 302, 963
BspMI ACCTGC 1 cut(s) 727
BspPI GGATC 4 cut(s) 208, 624, 956, 969
BspQI GCTCTTC 1 cut(s) 571
BspTI CTTAAG 1 cut(s) 362
BsrDI GCAATG 1 cut(s) 714
BsrGI TGTACA 2 cut(s) 386, 621
BsrI ACTGG 1 cut(s) 509
BssECI CCNNGG 2 cut(s) 87, 1161
BssMI GATC 6 cut(s) 213, 616, 843, 859, 961, 1023
BssNI GRCGYC 1 cut(s) 853
Bst2UI CCWGG 3 cut(s) 89, 894, 1087
Bst4CI ACNGT 1 cut(s) 992
Bst6I CTCTTC 5 cut(s) 60, 233, 320, 571, 1173
BstACI GRCGYC 1 cut(s) 853
BstAFI CTTAAG 1 cut(s) 362
BstAUI TGTACA 2 cut(s) 386, 621
BstDEI CTNAG 6 cut(s) 402, 417, 732, 807, 975, 1155
BstF5I GGATG 4 cut(s) 262, 517, 822, 1177
BstFNI CGCG 1 cut(s) 444
BstH2I RGCGCY 2 cut(s) 497, 1106
BstHHI GCGC 3 cut(s) 444, 496, 1105
BstKTI GATC 6 cut(s) 216, 619, 846, 862, 964, 1026
BstMAI GTCTC 3 cut(s) 465, 555, 1053
BstMBI GATC 6 cut(s) 213, 616, 843, 859, 961, 1023
BstMWI GCNNNNNNNGC 1 cut(s) 450
BstNI CCWGG 3 cut(s) 89, 894, 1087
BstSCI CCNGG 4 cut(s) 87, 612, 892, 1085
BstSFI CTRYAG 1 cut(s) 529
BstUI CGCG 1 cut(s) 444
BstV2I GAAGAC 1 cut(s) 1143
BstX2I RGATCY 3 cut(s) 213, 616, 961
BstYI RGATCY 3 cut(s) 213, 616, 961
Bsu36I CCTNAGG 1 cut(s) 402
BsuI GTATCC 1 cut(s) 189
BsuRI GGCC 1 cut(s) 763
BtsCI GGATG 4 cut(s) 262, 517, 822, 1177
BtsIMutI CAGTG 3 cut(s) 339, 972, 997
BveI ACCTGC 1 cut(s) 727
CciI TCATGA 1 cut(s) 856
CfoI GCGC 3 cut(s) 444, 496, 1105
Cfr13I GGNCC 2 cut(s) 107, 668
CseI GACGC 1 cut(s) 842
Csp6I GTAC 3 cut(s) 387, 622, 811
CviAII CATG 4 cut(s) 287, 347, 857, 1076
CviQI GTAC 3 cut(s) 387, 622, 811
DdeI CTNAG 6 cut(s) 402, 417, 732, 807, 975, 1155
DpnI GATC 6 cut(s) 215, 618, 845, 861, 963, 1025
DpnII GATC 6 cut(s) 213, 616, 843, 859, 961, 1023
Eam1104I CTCTTC 5 cut(s) 60, 233, 320, 571, 1173
EarI CTCTTC 5 cut(s) 60, 233, 320, 571, 1173
EciI GGCGGA 1 cut(s) 551
Eco24I GRGCYC 1 cut(s) 1021
Eco32I GATATC 1 cut(s) 379
Eco47I GGWCC 2 cut(s) 107, 668
Eco57I CTGAAG 4 cut(s) 51, 84, 287, 931
Eco81I CCTNAGG 1 cut(s) 402
EcoRI GAATTC 1 cut(s) 407
EcoRII CCWGG 3 cut(s) 87, 892, 1085
EcoRV GATATC 1 cut(s) 379
EcoT38I GRGCYC 1 cut(s) 1021
FaeI CATG 4 cut(s) 290, 350, 860, 1079
FalI AAGNNNNNCTT 2 cut(s) 345, 377
FatI CATG 4 cut(s) 286, 346, 856, 1075
FbaI TGATCA 1 cut(s) 859
Fnu4HI GCNGC 2 cut(s) 203, 764
FokI GGATG 3 cut(s) 269, 504, 809
FriOI GRGCYC 1 cut(s) 1021
Fsp4HI GCNGC 2 cut(s) 203, 764
FspBI CTAG 3 cut(s) 497, 554, 678
GlaI GCGC 3 cut(s) 443, 495, 1104
GluI GCNGC 2 cut(s) 203, 764
GsuI CTGGAG 1 cut(s) 218
HaeII RGCGCY 2 cut(s) 497, 1106
HaeIII GGCC 1 cut(s) 763
HapII CCGG 3 cut(s) 613, 689, 959
HgaI GACGC 1 cut(s) 842
HhaI GCGC 3 cut(s) 444, 496, 1105
Hin1I GRCGYC 1 cut(s) 853
Hin1II CATG 4 cut(s) 290, 350, 860, 1079
Hin6I GCGC 3 cut(s) 442, 494, 1103
HinP1I GCGC 3 cut(s) 442, 494, 1103
HincII GTYRAC 1 cut(s) 462
HindII GTYRAC 1 cut(s) 462
HindIII AAGCTT 4 cut(s) 33, 865, 878, 931
HinfI GANTC 4 cut(s) 430, 466, 1151, 1157
HpaII CCGG 3 cut(s) 613, 689, 959
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 3 cut(s) 387, 462, 1092
Hpy188I TCNGA 7 cut(s) 31, 64, 429, 841, 1058, 1156, 1162
Hpy188III TCNNGA 9 cut(s) 76, 235, 393, 412, 470, 487, 806, 857, 959
Hpy8I GTNNAC 3 cut(s) 387, 462, 1092
Hpy99I CGWCG 1 cut(s) 957
HpyAV CCTTC 3 cut(s) 45, 247, 262
HpyCH4III ACNGT 1 cut(s) 992
HpyCH4V TGCA 4 cut(s) 100, 139, 286, 453
HpyF10VI GCNNNNNNNGC 1 cut(s) 450
HpyF3I CTNAG 6 cut(s) 402, 417, 732, 807, 975, 1155
Hsp92I GRCGYC 1 cut(s) 853
Hsp92II CATG 4 cut(s) 290, 350, 860, 1079
HspAI GCGC 3 cut(s) 442, 494, 1103
Kpn2I TCCGGA 1 cut(s) 958
Ksp22I TGATCA 1 cut(s) 859
Kzo9I GATC 6 cut(s) 213, 616, 843, 859, 961, 1023
LguI GCTCTTC 1 cut(s) 571
LmnI GCTCC 2 cut(s) 124, 439
LweI GCATC 1 cut(s) 376
MaeI CTAG 3 cut(s) 497, 554, 678
MaeIII GTNAC 1 cut(s) 652
MalI GATC 6 cut(s) 215, 618, 845, 861, 963, 1025
MboI GATC 6 cut(s) 213, 616, 843, 859, 961, 1023
MboII GAAGA 8 cut(s) 77, 250, 337, 365, 588, 937, 1007, 1148
MflI RGATCY 3 cut(s) 213, 616, 961
MhlI GDGCHC 2 cut(s) 75, 1021
MlyI GAGTC 2 cut(s) 1160, 1166
MmeI TCCRAC 1 cut(s) 643
MroI TCCGGA 1 cut(s) 958
MroXI GAANNNNTTC 1 cut(s) 357
MseI TTAA 6 cut(s) 9, 188, 363, 512, 702, 939
MspA1I CMGCKG 1 cut(s) 202
MspCI CTTAAG 1 cut(s) 362
MspI CCGG 3 cut(s) 613, 689, 959
MspR9I CCNGG 4 cut(s) 89, 614, 894, 1087
Mva1269I GAATGC 1 cut(s) 139
MvaI CCWGG 3 cut(s) 89, 894, 1087
MvnI CGCG 1 cut(s) 444
MwoI GCNNNNNNNGC 1 cut(s) 450
NciI CCSGG 1 cut(s) 614
NdeII GATC 6 cut(s) 213, 616, 843, 859, 961, 1023
NlaIII CATG 4 cut(s) 290, 350, 860, 1079
NlaIV GGNNCC 3 cut(s) 120, 302, 963
PagI TCATGA 1 cut(s) 856
PaqCI CACCTGC 1 cut(s) 727
PciSI GCTCTTC 1 cut(s) 571
PctI GAATGC 1 cut(s) 139
PdmI GAANNNNTTC 1 cut(s) 357
PfeI GAWTC 2 cut(s) 430, 466
PfoI TCCNGGA 1 cut(s) 612
PkrI GCNGC 2 cut(s) 204, 765
PleI GAGTC 2 cut(s) 1159, 1165
PpsI GAGTC 2 cut(s) 1159, 1165
Psp6I CCWGG 3 cut(s) 87, 892, 1085
PspGI CCWGG 3 cut(s) 87, 892, 1085
PspN4I GGNNCC 3 cut(s) 120, 302, 963
PspPI GGNCC 2 cut(s) 107, 668
PsuI RGATCY 3 cut(s) 213, 616, 961
RsaI GTAC 3 cut(s) 388, 623, 812
RsaNI GTAC 3 cut(s) 387, 622, 811
SapI GCTCTTC 1 cut(s) 571
SaqAI TTAA 6 cut(s) 9, 188, 363, 512, 702, 939
SatI GCNGC 2 cut(s) 203, 764
Sau3AI GATC 6 cut(s) 213, 616, 843, 859, 961, 1023
Sau96I GGNCC 2 cut(s) 107, 668
SchI GAGTC 2 cut(s) 1160, 1166
ScrFI CCNGG 4 cut(s) 89, 614, 894, 1087
SduI GDGCHC 2 cut(s) 75, 1021
SfaNI GCATC 1 cut(s) 376
SfcI CTRYAG 1 cut(s) 529
SinI GGWCC 2 cut(s) 107, 668
SmlI CTYRAG 3 cut(s) 74, 362, 966
SmoI CTYRAG 3 cut(s) 74, 362, 966
SsiI CCGC 4 cut(s) 202, 508, 536, 764
SspMI CTAG 3 cut(s) 497, 554, 678
StyD4I CCNGG 4 cut(s) 87, 612, 892, 1085
TaaI ACNGT 1 cut(s) 992
TaqI TCGA 1 cut(s) 469
TatI WGTACW 2 cut(s) 386, 621
TauI GCSGC 2 cut(s) 205, 766
TfiI GAWTC 2 cut(s) 430, 466
Tru1I TTAA 6 cut(s) 9, 188, 363, 512, 702, 939
Tru9I TTAA 6 cut(s) 9, 188, 363, 512, 702, 939
TscAI CASTG 3 cut(s) 346, 979, 997
TspDTI ATGAA 4 cut(s) 338, 366, 725, 735
TspRI CASTG 3 cut(s) 346, 979, 997
Vha464I CTTAAG 1 cut(s) 362
VpaK11BI GGWCC 2 cut(s) 107, 668
XapI RAATTY 3 cut(s) 112, 227, 407
XmnI GAANNNNTTC 1 cut(s) 357
XspI CTAG 3 cut(s) 497, 554, 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.