Rorug02G0651200

Belongs to the nucleosome assembly protein (NAP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000381
Physical Location & Seq
Reverse (-)
75916430 .. 75919417
2988 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0651200.1

Sequence Viewer

Length: 2067 bp
ATGAGGATTTCGAAGTGGAGGTTGTGTCTCATCATCAAACGCCAATATTCAGGTTCAAGTAAACCCAGCCAATATTCAGGTTCAAGTAAACCCAGCCATTATTCAGGTTCAAGTAAACCCAGCCAATATTCAGGTTCAAGTAAACCCAGCCATTATTCAGGTTCAAGTAAACCCAACCTCACAGCCTGGTTCAACAAATACGTGGACAAAGCCGATGTCTGTTCGTGGAACTCGGTCATTGCAGACTTGGCTCGGAGCGGTAACTCCGTCGAAGCCCTCCGAGCCTTTTCGTCAATGCGAAGGCTCTCTCTCACCCCCAACCGCTCCTCCTTTCCTTGCGCCATCAAATCCTGCTCGGCTCTGTTGGATCTTTACTCCGGCAGGCAAGCCCACCAGCAGGCCTTGGTTTTCGGCTTCGAGTCCGATCTTTTCGTCTCCTCTGCTCTCATTGACATGTACTGCAGGTGCGGTTTATTGAGGGACGCATGGAAGTTGTTCGACGAAATTCCTCGCAGAAATGTGGTCTCTTGGACGTCCATGATCACAGGCTGCTTGCTAAACGACCACACCCACCAAGCCTTGTTGCTTTTTAAGGACTTGTTGGTCGATGAATTTGACAATGAGGACGTTGCTTTAGATCCGGTTGTTCTGGTTTCGGTTTTATCGGCTTGTTCTCGTGTATCCAGCAAGGGACTTACCCAATGTGTTCATGGGTTGGTGATGACAAGGGGTTTTGATGAGGATTTAGGAGTTGGAAACACCTTGATGGTTGCATACGCCAAGTGCGGCGAGCTCGGTCTGTCTAGGAAGGTGTTTGATGGAATGGCTCAAAGGGATTTGGTTTCTTGGAACTCCATGATTGCAATATATGCACAAAGTGGATTGTCTAATGAAGCATTGCATGTTTTCTATGGGATGGTGAAGGAGGGTGACTTCCTCTACAATGCAGTGACATTGTCTGCTGTGCTGTTAGCCTGTGCGCACGCTGGGGCTCTGCTAGTGGGGCAATGCGTACATGATCAGGTCGTAAAAATGGGCTTGGAAGAGAATGTGATTGTGTCTACCTCTATTATTGACATGTATTGTAAGTGTGGAAGAGTTGACATGGCAAGGAAGGCATTTGATTGCATGAAGGAGAAGAATGTCAAGACCTGGACTGCTATGGTTGCAGGTTATGGAATGCATGGTCGGGCCAAGGAGGCTTTGGAAGTCTTCTACAAAATGATAAGCCATGGCATTAAGCCAAATTACATAACATTTGTGTCGCTTCTAAATGCTTGCAGCCATGCTGGTCTATTAGCAGAAGGATGGTATTGGTTTAATACCATGAACCATGAATTTGGTGTAAAACCTGGGATTGAGCACTATGGGTGCATGGTGGACCTTCTTGGGCGTGCCGGTGATCTCACTAAGGCTTATGATTTAATAAAAGGAATGACAATGAGGCCAGATTCTGTGGTCTGGGGTTCCTTTCTTGGGGCTTGTAGGATACACAAAAACGTGAAGCTTGCAGAGATTTCTGCTAGGAAACTGTTTGAGTTGGATCCAAATAATTGTGGGTACTACATCTTGCTTTCAAATATATATGCCGATGCTGGGAGATGGGAAGATGTTGAGAAGATGAGACTACTAATGAAGAATCGTGGACTGGCTAAACCGCCTGGATTCAGTGTGGTTGAACTGAAAGGTATGGTTCATTTATTTTTAGTTGGAGATAGAGAGCATCCTCAGCATAAAAAGATTTATGAGTATCTGGAAAAACTAACTATAAAGCTGCAAGAAGCTGGCTATGCACCTGATATGGCTTCAGTTCTTCACGACGTTGATGAGGAAGAGAAAGAAATGACCCTGAGAGTTCATAGTGAGAAGCTAGCTGTTGCCTTTGGAATCATGAATTCAGTACCTGGTACAACAATTCAGATCATCAAGAATCTTCGAGTATGTGCTGACTGTCACACTGTGATCAAGCTGATATCCAAGGTTGTAAATCGGAAGATTGTAGTCAGAGATTCAAAACGGTTTCATCACTTCAGGGATGGGTTGTGTTCTTGTGGAGATTTTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAP

Protein Analysis

688

Amino Acids

76.72

Weight (kDa)

8.65

Isoelectric Point (pI)

33.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 281 - 310 3.5e-06 PPR repeat
PPR PF01535 355 - 382 5.6e-06 PPR repeat
PPR_2 PF13041 380 - 428 1.9e-10 PPR repeat family
PPR_3 PF13812 381 - 427 2.7e-06 Pentatricopeptide repeat domain
PPR PF01535 384 - 413 1.8e-07 PPR repeat
E_motif PF20431 498 - 560 7.6e-22 E motif
Eplus_motif PF20430 565 - 590 9.4e-06 E+ motif
DYW_deaminase PF14432 596 - 688 7.5e-43 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000381)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 453
AasI GACNNNNNNGTC 1 cut(s) 602
AatII GACGTC 1 cut(s) 536
Acc16I TGCGCA 1 cut(s) 981
Acc36I ACCTGC 2 cut(s) 453, 1160
AccBSI CCGCTC 2 cut(s) 258, 324
AccI GTMKAC 1 cut(s) 1061
AciI CCGC 5 cut(s) 258, 322, 468, 786, 1658
AclWI GGATC 4 cut(s) 375, 632, 1538, 1551
AcsI RAATTY 4 cut(s) 504, 611, 1337, 1894
AcuI CTGAAG 2 cut(s) 1791, 2014
AcyI GRCGYC 1 cut(s) 533
AdeI CACNNNGTG 2 cut(s) 878, 1960
AfaI GTAC 5 cut(s) 458, 1014, 1562, 1902, 1909
AfiI CCNNNNNNNGG 3 cut(s) 397, 1476, 1596
AflIII ACRYGT 2 cut(s) 453, 1077
AgsI TTSAA 9 cut(s) 57, 84, 111, 138, 165, 193, 1578, 1679, 2013
AjnI CCWGG 5 cut(s) 185, 1151, 1351, 1660, 1903
AluBI AGCT 7 cut(s) 793, 1507, 1774, 1784, 1870, 1874, 1969
AluI AGCT 7 cut(s) 793, 1507, 1774, 1784, 1870, 1874, 1969
Alw21I GWGCWC 2 cut(s) 795, 1365
Alw26I GTCTC 4 cut(s) 32, 439, 529, 1618
AlwI GGATC 4 cut(s) 375, 632, 1538, 1551
AlwNI CAGNNNCTG 2 cut(s) 1454, 1904
AoxI GGCC 3 cut(s) 399, 1191, 1445
ApeKI GCWGC 3 cut(s) 549, 1281, 1774
ApoI RAATTY 4 cut(s) 504, 611, 1337, 1894
ArsI GACNNNNNNTTYG 2 cut(s) 201, 233
Asp700I GAANNNNTTC 1 cut(s) 494
AspLEI GCGC 2 cut(s) 341, 982
AspS9I GGNCC 2 cut(s) 1191, 1381
AsuHPI GGTGA 5 cut(s) 304, 730, 931, 941, 1412
AsuII TTCGAA 1 cut(s) 11
AsuNHI GCTAGC 1 cut(s) 1870
AvaII GGWCC 1 cut(s) 1381
BamHI GGATCC 1 cut(s) 1543
BanII GRGCYC 2 cut(s) 795, 994
BauI CACGAG 1 cut(s) 675
BbsI GAAGAC 1 cut(s) 1204
Bbv12I GWGCWC 2 cut(s) 795, 1365
BbvCI CCTCAGC 1 cut(s) 1728
BbvI GCAGC 3 cut(s) 536, 1293, 1761
BccI CCATC 7 cut(s) 350, 760, 812, 910, 1302, 1596, 2030
BciT130I CCWGG 5 cut(s) 187, 1153, 1353, 1662, 1905
BciVI GTATCC 2 cut(s) 691, 1482
BclI TGATCA 3 cut(s) 540, 1018, 1962
BcoDI GTCTC 4 cut(s) 32, 439, 529, 1618
BfaI CTAG 4 cut(s) 804, 998, 1524, 1871
BfmI CTRYAG 1 cut(s) 460
BfuAI ACCTGC 2 cut(s) 453, 1160
BfuI GTATCC 2 cut(s) 691, 1482
BglI GCCNNNNNGGC 1 cut(s) 1199
BisI GCNGC 4 cut(s) 550, 787, 1282, 1775
BlsI GCNGC 4 cut(s) 551, 788, 1283, 1776
Bme1390I CCNGG 5 cut(s) 187, 1153, 1353, 1662, 1905
Bme18I GGWCC 1 cut(s) 1381
BmgT120I GGNCC 2 cut(s) 1191, 1381
BmiI GGNNCC 2 cut(s) 1468, 1545
BmrFI CCNGG 5 cut(s) 187, 1153, 1353, 1662, 1905
BmsI GCATC 2 cut(s) 1582, 1732
BmtI GCTAGC 1 cut(s) 1874
BpiI GAAGAC 1 cut(s) 1204
Bpu10I CCTNAGC 1 cut(s) 1728
Bpu14I TTCGAA 1 cut(s) 11
BsaAI YACGTR 1 cut(s) 202
BsaHI GRCGYC 1 cut(s) 533
BsaI GGTCTC 1 cut(s) 529
BsaJI CCNNGG 5 cut(s) 402, 1194, 1231, 1352, 1977
BsaWI WCCGGW 1 cut(s) 640
BsaXI ACNNNNNCTCC 4 cut(s) 10, 40, 311, 341
Bsc4I CCNNNNNNNGG 3 cut(s) 397, 1476, 1596
Bse118I RCCGGY 1 cut(s) 1397
Bse1I ACTGG 1 cut(s) 1653
Bse3DI GCAATG 3 cut(s) 237, 896, 1013
BseBI CCWGG 5 cut(s) 187, 1153, 1353, 1662, 1905
BseDI CCNNGG 5 cut(s) 402, 1194, 1231, 1352, 1977
BseGI GGATG 4 cut(s) 921, 1313, 1723, 2041
BseLI CCNNNNNNNGG 3 cut(s) 397, 1476, 1596
BseMI GCAATG 3 cut(s) 237, 896, 1013
BseMII CTCAG 2 cut(s) 1742, 1841
BseNI ACTGG 1 cut(s) 1653
BseRI GAGGAG 2 cut(s) 316, 427
BseXI GCAGC 3 cut(s) 536, 1293, 1761
BseYI CCCAGC 6 cut(s) 65, 92, 119, 146, 986, 1595
BshFI GGCC 3 cut(s) 401, 1193, 1447
BsiHKAI GWGCWC 2 cut(s) 795, 1365
BsiSI CCGG 3 cut(s) 378, 641, 1398
BslFI GGGAC 2 cut(s) 494, 705
BslI CCNNNNNNNGG 3 cut(s) 397, 1476, 1596
BsmAI GTCTC 4 cut(s) 32, 439, 529, 1618
BsmBI CGTCTC 1 cut(s) 439
BsmFI GGGAC 2 cut(s) 494, 705
BsmI GAATGC 1 cut(s) 1185
BsnI GGCC 3 cut(s) 401, 1193, 1447
Bso31I GGTCTC 1 cut(s) 529
Bsp119I TTCGAA 1 cut(s) 11
Bsp1286I GDGCHC 3 cut(s) 795, 994, 1365
Bsp143I GATC 9 cut(s) 367, 424, 540, 637, 1018, 1402, 1543, 1920, 1962
Bsp19I CCATGG 1 cut(s) 1231
BspACI CCGC 5 cut(s) 258, 322, 468, 786, 1658
BspANI GGCC 3 cut(s) 401, 1193, 1447
BspCNI CTCAG 2 cut(s) 1741, 1842
BspHI TCATGA 1 cut(s) 1890
BspLI GGNNCC 2 cut(s) 1468, 1545
BspMAI CTGCAG 1 cut(s) 464
BspMI ACCTGC 2 cut(s) 453, 1160
BspOI GCTAGC 1 cut(s) 1874
BspPI GGATC 4 cut(s) 375, 632, 1538, 1551
BspT104I TTCGAA 1 cut(s) 11
BspTNI GGTCTC 1 cut(s) 529
BsrBI CCGCTC 2 cut(s) 258, 324
BsrDI GCAATG 3 cut(s) 237, 896, 1013
BsrFI RCCGGY 1 cut(s) 1397
BsrI ACTGG 1 cut(s) 1653
BssAI RCCGGY 1 cut(s) 1397
BssECI CCNNGG 5 cut(s) 402, 1194, 1231, 1352, 1977
BssMI GATC 9 cut(s) 367, 424, 540, 637, 1018, 1402, 1543, 1920, 1962
BssNI GRCGYC 1 cut(s) 533
BssSI CACGAG 1 cut(s) 675
BssT1I CCWWGG 4 cut(s) 402, 1194, 1231, 1977
Bst2BI CACGAG 1 cut(s) 675
Bst2UI CCWGG 5 cut(s) 187, 1153, 1353, 1662, 1905
Bst4CI ACNGT 4 cut(s) 1533, 1952, 1960, 2019
Bst6I CTCTTC 3 cut(s) 1038, 1090, 1827
BstACI GRCGYC 1 cut(s) 533
BstAPI GCANNNNNTGC 1 cut(s) 869
BstBAI YACGTR 1 cut(s) 202
BstBI TTCGAA 1 cut(s) 11
BstDEI CTNAG 3 cut(s) 1410, 1728, 1850
BstDSI CCRYGG 1 cut(s) 1231
BstF5I GGATG 4 cut(s) 921, 1313, 1723, 2041
BstHHI GCGC 2 cut(s) 341, 982
BstKTI GATC 9 cut(s) 370, 427, 543, 640, 1021, 1405, 1546, 1923, 1965
BstMAI GTCTC 4 cut(s) 32, 439, 529, 1618
BstMBI GATC 9 cut(s) 367, 424, 540, 637, 1018, 1402, 1543, 1920, 1962
BstMWI GCNNNNNNNGC 9 cut(s) 248, 281, 869, 1003, 1115, 1166, 1199, 1729, 1790
BstNI CCWGG 5 cut(s) 187, 1153, 1353, 1662, 1905
BstNSI RCATGY 3 cut(s) 457, 905, 1081
BstSCI CCNGG 5 cut(s) 185, 1151, 1351, 1660, 1903
BstSFI CTRYAG 1 cut(s) 460
BstV1I GCAGC 3 cut(s) 536, 1293, 1761
BstV2I GAAGAC 1 cut(s) 1204
BstX2I RGATCY 3 cut(s) 367, 637, 1543
BstXI CCANNNNNNTGG 1 cut(s) 1340
BstYI RGATCY 3 cut(s) 367, 637, 1543
BsuI GTATCC 2 cut(s) 691, 1482
BsuRI GGCC 3 cut(s) 401, 1193, 1447
BtgI CCRYGG 1 cut(s) 1231
BtsCI GGATG 4 cut(s) 921, 1313, 1723, 2041
BtsI GCAGTG 1 cut(s) 954
BtsIMutI CAGTG 3 cut(s) 954, 1675, 1956
BveI ACCTGC 2 cut(s) 453, 1160
CaiI CAGNNNCTG 2 cut(s) 1454, 1904
CciI TCATGA 1 cut(s) 1890
CfoI GCGC 2 cut(s) 341, 982
Cfr10I RCCGGY 1 cut(s) 1397
Cfr13I GGNCC 2 cut(s) 1191, 1381
CseI GACGC 1 cut(s) 491
CsiI ACCWGGT 1 cut(s) 1903
Csp6I GTAC 5 cut(s) 457, 1013, 1561, 1901, 1908
CviQI GTAC 5 cut(s) 457, 1013, 1561, 1901, 1908
DdeI CTNAG 3 cut(s) 1410, 1728, 1850
DpnI GATC 9 cut(s) 369, 426, 542, 639, 1020, 1404, 1545, 1922, 1964
DpnII GATC 9 cut(s) 367, 424, 540, 637, 1018, 1402, 1543, 1920, 1962
DraIII CACNNNGTG 2 cut(s) 878, 1960
DrdI GACNNNNNNGTC 1 cut(s) 602
DseDI GACNNNNNNGTC 1 cut(s) 602
Eam1104I CTCTTC 3 cut(s) 1038, 1090, 1827
EarI CTCTTC 3 cut(s) 1038, 1090, 1827
Ecl136II GAGCTC 1 cut(s) 793
Eco130I CCWWGG 4 cut(s) 402, 1194, 1231, 1977
Eco147I AGGCCT 1 cut(s) 401
Eco24I GRGCYC 2 cut(s) 795, 994
Eco31I GGTCTC 1 cut(s) 529
Eco32I GATATC 1 cut(s) 1974
Eco47I GGWCC 1 cut(s) 1381
Eco53kI GAGCTC 1 cut(s) 793
Eco57I CTGAAG 2 cut(s) 1791, 2014
EcoICRI GAGCTC 1 cut(s) 793
EcoRI GAATTC 1 cut(s) 1894
EcoRII CCWGG 5 cut(s) 185, 1151, 1351, 1660, 1903
EcoRV GATATC 1 cut(s) 1974
EcoT14I CCWWGG 4 cut(s) 402, 1194, 1231, 1977
EcoT22I ATGCAT 1 cut(s) 1185
EcoT38I GRGCYC 2 cut(s) 795, 994
ErhI CCWWGG 4 cut(s) 402, 1194, 1231, 1977
Esp3I CGTCTC 1 cut(s) 439
FaqI GGGAC 2 cut(s) 494, 705
FbaI TGATCA 3 cut(s) 540, 1018, 1962
FblI GTMKAC 1 cut(s) 1061
Fnu4HI GCNGC 4 cut(s) 550, 787, 1282, 1775
FokI GGATG 4 cut(s) 928, 1320, 1710, 2048
FriOI GRGCYC 2 cut(s) 795, 994
Fsp4HI GCNGC 4 cut(s) 550, 787, 1282, 1775
FspAI RTGCGCAY 1 cut(s) 981
FspBI CTAG 4 cut(s) 804, 998, 1524, 1871
FspI TGCGCA 1 cut(s) 981
GlaI GCGC 2 cut(s) 340, 981
GluI GCNGC 4 cut(s) 550, 787, 1282, 1775
GsaI CCCAGC 6 cut(s) 69, 96, 123, 150, 990, 1599
HaeIII GGCC 3 cut(s) 401, 1193, 1447
HapII CCGG 3 cut(s) 378, 641, 1398
HgaI GACGC 1 cut(s) 491
HhaI GCGC 2 cut(s) 341, 982
Hin1I GRCGYC 1 cut(s) 533
Hin6I GCGC 2 cut(s) 339, 980
HinP1I GCGC 2 cut(s) 339, 980
HincII GTYRAC 1 cut(s) 1102
HindII GTYRAC 1 cut(s) 1102
HindIII AAGCTT 1 cut(s) 1505
HinfI GANTC 7 cut(s) 419, 1451, 1639, 1665, 1887, 1930, 2009
HpaII CCGG 3 cut(s) 378, 641, 1398
HphI GGTGA 5 cut(s) 304, 730, 931, 941, 1412
Hpy188I TCNGA 6 cut(s) 255, 281, 424, 1920, 1992, 2006
Hpy188III TCNNGA 5 cut(s) 1147, 1754, 1817, 1891, 1927
Hpy99I CGWCG 3 cut(s) 272, 503, 1823
HpyAV CCTTC 7 cut(s) 294, 802, 916, 1108, 1126, 1298, 1394
HpyCH4III ACNGT 4 cut(s) 1533, 1952, 1960, 2019
HpyCH4IV ACGT 5 cut(s) 201, 533, 627, 1500, 1821
HpyF10VI GCNNNNNNNGC 9 cut(s) 248, 281, 869, 1003, 1115, 1166, 1199, 1729, 1790
HpyF3I CTNAG 3 cut(s) 1410, 1728, 1850
HpySE526I ACGT 5 cut(s) 201, 533, 627, 1500, 1821
Hsp92I GRCGYC 1 cut(s) 533
HspAI GCGC 2 cut(s) 339, 980
Ksp22I TGATCA 3 cut(s) 540, 1018, 1962
Kzo9I GATC 9 cut(s) 367, 424, 540, 637, 1018, 1402, 1543, 1920, 1962
LmnI GCTCC 2 cut(s) 255, 329
Lsp1109I GCAGC 3 cut(s) 536, 1293, 1761
LweI GCATC 2 cut(s) 1582, 1732
MabI ACCWGGT 1 cut(s) 1903
MaeI CTAG 4 cut(s) 804, 998, 1524, 1871
MaeII ACGT 5 cut(s) 201, 533, 627, 1500, 1821
MaeIII GTNAC 4 cut(s) 260, 929, 949, 1952
MalI GATC 9 cut(s) 369, 426, 542, 639, 1020, 1404, 1545, 1922, 1964
MbiI CCGCTC 2 cut(s) 258, 324
MboI GATC 9 cut(s) 367, 424, 540, 637, 1018, 1402, 1543, 1920, 1962
MflI RGATCY 3 cut(s) 367, 637, 1543
MhlI GDGCHC 3 cut(s) 795, 994, 1365
MluCI AATT 7 cut(s) 504, 611, 1246, 1337, 1552, 1894, 1914
MlyI GAGTC 1 cut(s) 428
MmeI TCCRAC 4 cut(s) 345, 733, 1521, 1690
Mph1103I ATGCAT 1 cut(s) 1185
MroXI GAANNNNTTC 1 cut(s) 494
MseI TTAA 4 cut(s) 591, 1239, 1320, 1424
MslI CAYNNNNRTG 2 cut(s) 452, 764
MspI CCGG 3 cut(s) 378, 641, 1398
MspR9I CCNGG 5 cut(s) 187, 1153, 1353, 1662, 1905
Mva1269I GAATGC 1 cut(s) 1185
MvaI CCWGG 5 cut(s) 187, 1153, 1353, 1662, 1905
MwoI GCNNNNNNNGC 9 cut(s) 248, 281, 869, 1003, 1115, 1166, 1199, 1729, 1790
NcoI CCATGG 1 cut(s) 1231
NdeII GATC 9 cut(s) 367, 424, 540, 637, 1018, 1402, 1543, 1920, 1962
NheI GCTAGC 1 cut(s) 1870
NlaIV GGNNCC 2 cut(s) 1468, 1545
NmeAIII GCCGAG 1 cut(s) 335
NmuCI GTSAC 3 cut(s) 929, 949, 1952
NsbI TGCGCA 1 cut(s) 981
NsiI ATGCAT 1 cut(s) 1185
NspI RCATGY 3 cut(s) 457, 905, 1081
NspV TTCGAA 1 cut(s) 11
PagI TCATGA 1 cut(s) 1890
PaqCI CACCTGC 1 cut(s) 453
PceI AGGCCT 1 cut(s) 401
PciI ACATGT 2 cut(s) 453, 1077
PctI GAATGC 1 cut(s) 1185
PdmI GAANNNNTTC 1 cut(s) 494
PfeI GAWTC 6 cut(s) 1451, 1639, 1665, 1887, 1930, 2009
PflFI GACNNNGTC 1 cut(s) 955
PkrI GCNGC 4 cut(s) 551, 788, 1283, 1776
PleI GAGTC 1 cut(s) 427
PpsI GAGTC 1 cut(s) 427
Ppu21I YACGTR 1 cut(s) 202
PscI ACATGT 2 cut(s) 453, 1077
Psp124BI GAGCTC 1 cut(s) 795
Psp6I CCWGG 5 cut(s) 185, 1151, 1351, 1660, 1903
PspFI CCCAGC 6 cut(s) 65, 92, 119, 146, 986, 1595
PspGI CCWGG 5 cut(s) 185, 1151, 1351, 1660, 1903
PspN4I GGNNCC 2 cut(s) 1468, 1545
PspPI GGNCC 2 cut(s) 1191, 1381
PstI CTGCAG 1 cut(s) 464
PstNI CAGNNNCTG 2 cut(s) 1454, 1904
PsuI RGATCY 3 cut(s) 367, 637, 1543
PsyI GACNNNGTC 1 cut(s) 955
RsaI GTAC 5 cut(s) 458, 1014, 1562, 1902, 1909
RsaNI GTAC 5 cut(s) 457, 1013, 1561, 1901, 1908
RseI CAYNNNNRTG 2 cut(s) 452, 764
SacI GAGCTC 1 cut(s) 795
SaqAI TTAA 4 cut(s) 591, 1239, 1320, 1424
SatI GCNGC 4 cut(s) 550, 787, 1282, 1775
Sau3AI GATC 9 cut(s) 367, 424, 540, 637, 1018, 1402, 1543, 1920, 1962
Sau96I GGNCC 2 cut(s) 1191, 1381
SchI GAGTC 1 cut(s) 428
ScrFI CCNGG 5 cut(s) 187, 1153, 1353, 1662, 1905
SduI GDGCHC 3 cut(s) 795, 994, 1365
SexAI ACCWGGT 1 cut(s) 1903
SfaNI GCATC 2 cut(s) 1582, 1732
SfcI CTRYAG 1 cut(s) 460
SfuI TTCGAA 1 cut(s) 11
SinI GGWCC 1 cut(s) 1381
SmiMI CAYNNNNRTG 2 cut(s) 452, 764
Sse9I AATT 7 cut(s) 504, 611, 1246, 1337, 1552, 1894, 1914
SseBI AGGCCT 1 cut(s) 401
SsiI CCGC 5 cut(s) 258, 322, 468, 786, 1658
SspI AATATT 3 cut(s) 47, 74, 128
SspMI CTAG 4 cut(s) 804, 998, 1524, 1871
SstI GAGCTC 1 cut(s) 795
StuI AGGCCT 1 cut(s) 401
StyD4I CCNGG 5 cut(s) 185, 1151, 1351, 1660, 1903
StyI CCWWGG 4 cut(s) 402, 1194, 1231, 1977
TaaI ACNGT 4 cut(s) 1533, 1952, 1960, 2019
TaiI ACGT 5 cut(s) 204, 536, 630, 1503, 1824
TaqI TCGA 6 cut(s) 11, 270, 417, 498, 606, 1936
TaqII GACCGA 2 cut(s) 223, 785
TasI AATT 7 cut(s) 504, 611, 1246, 1337, 1552, 1894, 1914
TatI WGTACW 1 cut(s) 456
TauI GCSGC 1 cut(s) 789
TfiI GAWTC 6 cut(s) 1451, 1639, 1665, 1887, 1930, 2009
Tru1I TTAA 4 cut(s) 591, 1239, 1320, 1424
Tru9I TTAA 4 cut(s) 591, 1239, 1320, 1424
TscAI CASTG 3 cut(s) 954, 1675, 1963
TseFI GTSAC 3 cut(s) 929, 949, 1952
TseI GCWGC 3 cut(s) 549, 1281, 1774
Tsp45I GTSAC 3 cut(s) 929, 949, 1952
TspGWI ACGGA 1 cut(s) 256
TspRI CASTG 3 cut(s) 954, 1675, 1963
Tth111I GACNNNGTC 1 cut(s) 955
VpaK11BI GGWCC 1 cut(s) 1381
XapI RAATTY 4 cut(s) 504, 611, 1337, 1894
XceI RCATGY 3 cut(s) 457, 905, 1081
XcmI CCANNNNNNNNNTGG 2 cut(s) 707, 1201
XmiI GTMKAC 1 cut(s) 1061
XmnI GAANNNNTTC 1 cut(s) 494
XspI CTAG 4 cut(s) 804, 998, 1524, 1871
ZraI GACGTC 1 cut(s) 534
Zsp2I ATGCAT 1 cut(s) 1185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.