Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Reverse (-)

1763237 .. 1764343

Gene Structure 1107 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015834

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAGCTGGAAAAGAACTGTGTTGTGGAGAGAGCTGCATAGGAAGAAAAATATTGGGAGCGCTTTCATTACCATTTCGAGAACCAAGAGATATGAGATTGTGTATGGTTTAACTGAAGTTGAAGGAGTAACTAATGAAGCTTCAATCGATCAAGAAGGAGAGAAATCCACCAAAGGTGTTGCAGAATACAGTCCGAAAGGATCATTCAAGCTCGATTTCATCTTTAATCTGAATCCTTATTTTGAAAACCTGGTCCTTACTAAAATGTATCGCATGACTGGTGACGACGAGTCTTTACTGGAGAAAACTATTGGGACCGAGATCAAATGGTATCCATTAAGAAGCTCAGCAGAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

120

Amino Acids

13.86

Weight (kDa)

8.8

Isoelectric Point (pI)

38.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	65 - 112	3.6e-10	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	208
AcuI	CTGAAG	1 cut(s)	135
AfeI	AGCGCT	1 cut(s)	61
AgsI	TTSAA	4 cut(s)	122, 144, 208, 245
AhdI	GACNNNNNGTC	1 cut(s)	289
AjnI	CCWGG	1 cut(s)	249
AluBI	AGCT	5 cut(s)	6, 34, 140, 211, 345
AluI	AGCT	5 cut(s)	6, 34, 140, 211, 345
AlwI	GGATC	1 cut(s)	208
Aor51HI	AGCGCT	1 cut(s)	61
ApeKI	GCWGC	1 cut(s)	34
AspLEI	GCGC	1 cut(s)	62
AspS9I	GGNCC	2 cut(s)	253, 315
AsuHPI	GGTGA	1 cut(s)	293
AvaII	GGWCC	2 cut(s)	253, 315
BbvI	GCAGC	1 cut(s)	21
BciT130I	CCWGG	1 cut(s)	251
BciVI	GTATCC	1 cut(s)	342
BfoI	RGCGCY	1 cut(s)	63
BfuI	GTATCC	1 cut(s)	342
BisI	GCNGC	1 cut(s)	35
BlpI	GCTNAGC	1 cut(s)	346
BlsI	GCNGC	1 cut(s)	36
Bme1390I	CCNGG	1 cut(s)	251
Bme18I	GGWCC	2 cut(s)	253, 315
BmeRI	GACNNNNNGTC	1 cut(s)	289
BmgT120I	GGNCC	2 cut(s)	253, 315
BmiI	GGNNCC	1 cut(s)	316
BmrFI	CCNGG	1 cut(s)	251
BpmI	CTGGAG	1 cut(s)	320
Bpu1102I	GCTNAGC	1 cut(s)	346
Bsa29I	ATCGAT	1 cut(s)	147
Bse1I	ACTGG	2 cut(s)	283, 303
BseBI	CCWGG	1 cut(s)	251
BseCI	ATCGAT	1 cut(s)	147
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	2 cut(s)	283, 303
BseXI	GCAGC	1 cut(s)	21
BshVI	ATCGAT	1 cut(s)	147
BslFI	GGGAC	1 cut(s)	328
BsmFI	GGGAC	1 cut(s)	328
Bsp143I	GATC	3 cut(s)	148, 200, 321
Bsp1720I	GCTNAGC	1 cut(s)	346
BspCNI	CTCAG	1 cut(s)	359
BspDI	ATCGAT	1 cut(s)	147
BspLI	GGNNCC	1 cut(s)	316
BspPI	GGATC	1 cut(s)	208
BsrI	ACTGG	2 cut(s)	283, 303
BssMI	GATC	3 cut(s)	148, 200, 321
Bst2UI	CCWGG	1 cut(s)	251
Bst4CI	ACNGT	2 cut(s)	19, 191
BstDEI	CTNAG	1 cut(s)	346
BstH2I	RGCGCY	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	3 cut(s)	151, 203, 324
BstMBI	GATC	3 cut(s)	148, 200, 321
BstNI	CCWGG	1 cut(s)	251
BstSCI	CCNGG	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	21
Bsu15I	ATCGAT	1 cut(s)	147
BsuI	GTATCC	1 cut(s)	342
BsuTUI	ATCGAT	1 cut(s)	147
CfoI	GCGC	1 cut(s)	62
Cfr13I	GGNCC	2 cut(s)	253, 315
ClaI	ATCGAT	1 cut(s)	147
CsiI	ACCWGGT	1 cut(s)	249
CviAII	CATG	1 cut(s)	274
CviJI	RGCY	5 cut(s)	6, 34, 140, 211, 345
CviKI_1	RGCY	5 cut(s)	6, 34, 140, 211, 345
DdeI	CTNAG	1 cut(s)	346
DpnI	GATC	3 cut(s)	150, 202, 323
DpnII	GATC	3 cut(s)	148, 200, 321
DriI	GACNNNNNGTC	1 cut(s)	289
Eam1105I	GACNNNNNGTC	1 cut(s)	289
Eco47I	GGWCC	2 cut(s)	253, 315
Eco47III	AGCGCT	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	135
EcoRII	CCWGG	1 cut(s)	249
FaeI	CATG	1 cut(s)	277
FaiI	YATR	4 cut(s)	39, 93, 105, 275
FaqI	GGGAC	1 cut(s)	328
FatI	CATG	1 cut(s)	273
Fnu4HI	GCNGC	1 cut(s)	35
Fsp4HI	GCNGC	1 cut(s)	35
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	1 cut(s)	35
GsuI	CTGGAG	1 cut(s)	320
HaeII	RGCGCY	1 cut(s)	63
HhaI	GCGC	1 cut(s)	62
Hin1II	CATG	1 cut(s)	277
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HindIII	AAGCTT	1 cut(s)	138
HinfI	GANTC	2 cut(s)	232, 290
HphI	GGTGA	1 cut(s)	293
Hpy188I	TCNGA	2 cut(s)	195, 231
Hpy188III	TCNNGA	2 cut(s)	78, 152
Hpy99I	CGWCG	1 cut(s)	290
HpyAV	CCTTC	2 cut(s)	116, 149
HpyCH4III	ACNGT	2 cut(s)	19, 191
HpyCH4V	TGCA	2 cut(s)	37, 182
HpyF3I	CTNAG	1 cut(s)	346
Hsp92II	CATG	1 cut(s)	277
HspAI	GCGC	1 cut(s)	60
Kzo9I	GATC	3 cut(s)	148, 200, 321
LmnI	GCTCC	1 cut(s)	57
LpnPI	CCDG	4 cut(s)	236, 263, 264, 284
Lsp1109I	GCAGC	1 cut(s)	21
MabI	ACCWGGT	1 cut(s)	249
MaeIII	GTNAC	2 cut(s)	127, 281
MalI	GATC	3 cut(s)	150, 202, 323
MboI	GATC	3 cut(s)	148, 200, 321
MboII	GAAGA	1 cut(s)	55
MlyI	GAGTC	1 cut(s)	299
MseI	TTAA	3 cut(s)	110, 225, 338
MspR9I	CCNGG	1 cut(s)	251
MvaI	CCWGG	1 cut(s)	251
NdeII	GATC	3 cut(s)	148, 200, 321
NlaIII	CATG	1 cut(s)	277
NlaIV	GGNNCC	1 cut(s)	316
NmuCI	GTSAC	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	232
PkrI	GCNGC	1 cut(s)	36
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
Psp6I	CCWGG	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	1 cut(s)	316
PspPI	GGNCC	2 cut(s)	253, 315
SaqAI	TTAA	3 cut(s)	110, 225, 338
SatI	GCNGC	1 cut(s)	35
Sau3AI	GATC	3 cut(s)	148, 200, 321
Sau96I	GGNCC	2 cut(s)	253, 315
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	1 cut(s)	251
SetI	ASST	7 cut(s)	8, 36, 142, 178, 213, 252, 347
SexAI	ACCWGGT	1 cut(s)	249
SinI	GGWCC	2 cut(s)	253, 315
SspI	AATATT	1 cut(s)	52
StyD4I	CCNGG	1 cut(s)	249
TaaI	ACNGT	2 cut(s)	19, 191
TaqI	TCGA	3 cut(s)	77, 147, 213
TaqII	GACCGA	1 cut(s)	332
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	3 cut(s)	110, 225, 338
Tru9I	TTAA	3 cut(s)	110, 225, 338
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	3 cut(s)	55, 150, 208
VpaK11BI	GGWCC	2 cut(s)	253, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.