Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Reverse (-)

62766947 .. 62768746

Gene Structure 1800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG443100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGAACCATGACGAACGCGCTCTCCAGTATCTGAACGATATCAAGTGGTCCAGGATACATGATCCTAAGGGATTCAGGCTGGAATTTTTATTTGATCCTAATCCTTACTTTCGAAACTCCGTCCTGACAAAAACATATTACATGGTTGAAGAACATGTACCGATATGGAGCAAGGAAATCGGGACGGAGATTGATTGGTATCCCGGGCAATGCTTGACAATCAATCCAAGAACGGACCCAAAGAGTGCCAAGTCTATGACTCCAGCTGATATTTGTTCCAGCTTCTTTACGATTTTCAAACTTCCCCAACATGATGATTATACTGGTGCAGATATGGCTTCTATGTTCAAGACTAGGATAGAAAACGACCGTGAAATGGGCTTAACAATTCGAGACAAGATCATCCCTCACGCAGTGTCATGGTTCGCTGTTAATATAGACGAGCTTGATGATAGTGAAGACGACGATGACAGTGATCATGACTATCATTTTGACTTTGATAGTGATGATGAAGATGACGCGTACAAGAAGTATGCTGCTGCTTATAACAACAAGAAAGAAGAGGAAGATCGCAAAAGAAAGAGAGAGAGTGACTGGACTAATGCTGAGAGAGCAATGGCTAGGTTAACGCTGCGAGAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

214

Amino Acids

25.39

Weight (kDa)

4.76

Isoelectric Point (pI)

40.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	2 - 143	1.4e-35	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	546
AccII	CGCG	2 cut(s)	18, 521
AclWI	GGATC	2 cut(s)	56, 89
AcsI	RAATTY	1 cut(s)	83
AdeI	CACNNNGTG	1 cut(s)	415
AfaI	GTAC	2 cut(s)	159, 524
AfiI	CCNNNNNNNGG	1 cut(s)	376
AflIII	ACRYGT	2 cut(s)	154, 519
AgsI	TTSAA	3 cut(s)	149, 298, 349
AjnI	CCWGG	1 cut(s)	50
AloI	GAACNNNNNNTCC	1 cut(s)	38
AluBI	AGCT	3 cut(s)	266, 282, 445
AluI	AGCT	3 cut(s)	266, 282, 445
Alw26I	GTCTC	1 cut(s)	387
AlwI	GGATC	2 cut(s)	56, 89
AlwNI	CAGNNNCTG	1 cut(s)	31
Ama87I	CYCGRG	1 cut(s)	203
ApeKI	GCWGC	3 cut(s)	536, 539, 631
ApoI	RAATTY	1 cut(s)	83
ArsI	GACNNNNNNTTYG	2 cut(s)	473, 505
AspLEI	GCGC	1 cut(s)	20
AspS9I	GGNCC	2 cut(s)	48, 235
AsuC2I	CCSGG	2 cut(s)	204, 205
AsuII	TTCGAA	1 cut(s)	112
AvaI	CYCGRG	1 cut(s)	203
AvaII	GGWCC	2 cut(s)	48, 235
AxyI	CCTNAGG	1 cut(s)	66
BarI	GAAGNNNNNNTAC	2 cut(s)	141, 173
BbsI	GAAGAC	1 cut(s)	465
BbvI	GCAGC	3 cut(s)	523, 526, 618
BcgI	CGANNNNNNTGC	2 cut(s)	160, 194
BciT130I	CCWGG	1 cut(s)	52
BciVI	GTATCC	2 cut(s)	48, 210
BclI	TGATCA	1 cut(s)	475
BcnI	CCSGG	2 cut(s)	204, 205
BcoDI	GTCTC	1 cut(s)	387
BfaI	CTAG	2 cut(s)	354, 621
BfuI	GTATCC	2 cut(s)	48, 210
BisI	GCNGC	3 cut(s)	537, 540, 632
BlsI	GCNGC	3 cut(s)	538, 541, 633
Bme1390I	CCNGG	3 cut(s)	52, 204, 205
Bme18I	GGWCC	2 cut(s)	48, 235
BmeT110I	CYCGRG	1 cut(s)	203
BmgT120I	GGNCC	2 cut(s)	48, 235
BmiI	GGNNCC	1 cut(s)	237
BmrFI	CCNGG	3 cut(s)	52, 204, 205
BpiI	GAAGAC	1 cut(s)	465
BpmI	CTGGAG	2 cut(s)	8, 246
Bpu14I	TTCGAA	1 cut(s)	112
BpuMI	CCSGG	2 cut(s)	204, 205
BsaBI	GATNNNNATC	2 cut(s)	99, 198
BsaJI	CCNNGG	1 cut(s)	203
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bsc4I	CCNNNNNNNGG	1 cut(s)	376
Bse1I	ACTGG	3 cut(s)	25, 328, 599
Bse21I	CCTNAGG	1 cut(s)	66
Bse3DI	GCAATG	2 cut(s)	215, 621
Bse8I	GATNNNNATC	2 cut(s)	99, 198
BseBI	CCWGG	1 cut(s)	52
BseDI	CCNNGG	1 cut(s)	203
BseGI	GGATG	1 cut(s)	402
BseJI	GATNNNNATC	2 cut(s)	99, 198
BseLI	CCNNNNNNNGG	1 cut(s)	376
BseMI	GCAATG	2 cut(s)	215, 621
BseMII	CTCAG	1 cut(s)	597
BseNI	ACTGG	3 cut(s)	25, 328, 599
BseXI	GCAGC	3 cut(s)	523, 526, 618
BsgI	GTGCAG	1 cut(s)	348
Bsh1236I	CGCG	2 cut(s)	18, 521
Bsh1285I	CGRYCG	1 cut(s)	370
BsiEI	CGRYCG	1 cut(s)	370
BsiHKCI	CYCGRG	1 cut(s)	203
BsiSI	CCGG	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	196
BslI	CCNNNNNNNGG	1 cut(s)	376
BsmAI	GTCTC	1 cut(s)	387
BsmFI	GGGAC	1 cut(s)	196
BsoBI	CYCGRG	1 cut(s)	203
Bsp119I	TTCGAA	1 cut(s)	112
Bsp143I	GATC	5 cut(s)	61, 94, 399, 475, 568
BspCNI	CTCAG	1 cut(s)	598
BspFNI	CGCG	2 cut(s)	18, 521
BspHI	TCATGA	1 cut(s)	478
BspLI	GGNNCC	1 cut(s)	237
BspPI	GGATC	2 cut(s)	56, 89
BspT104I	TTCGAA	1 cut(s)	112
BsrDI	GCAATG	2 cut(s)	215, 621
BsrI	ACTGG	3 cut(s)	25, 328, 599
BssECI	CCNNGG	1 cut(s)	203
BssMI	GATC	5 cut(s)	61, 94, 399, 475, 568
Bst2UI	CCWGG	1 cut(s)	52
Bst4CI	ACNGT	2 cut(s)	371, 473
Bst6I	CTCTTC	1 cut(s)	555
BstBI	TTCGAA	1 cut(s)	112
BstDEI	CTNAG	2 cut(s)	66, 606
BstF5I	GGATG	1 cut(s)	402
BstFNI	CGCG	2 cut(s)	18, 521
BstHHI	GCGC	1 cut(s)	20
BstKTI	GATC	5 cut(s)	64, 97, 402, 478, 571
BstMAI	GTCTC	1 cut(s)	387
BstMBI	GATC	5 cut(s)	61, 94, 399, 475, 568
BstMCI	CGRYCG	1 cut(s)	370
BstMWI	GCNNNNNNNGC	3 cut(s)	335, 611, 637
BstNI	CCWGG	1 cut(s)	52
BstNSI	RCATGY	1 cut(s)	158
BstSCI	CCNGG	3 cut(s)	50, 202, 203
BstUI	CGCG	2 cut(s)	18, 521
BstV1I	GCAGC	3 cut(s)	523, 526, 618
BstV2I	GAAGAC	1 cut(s)	465
Bsu36I	CCTNAGG	1 cut(s)	66
BsuI	GTATCC	2 cut(s)	48, 210
BtsCI	GGATG	1 cut(s)	402
BtsI	GCAGTG	1 cut(s)	420
BtsIMutI	CAGTG	2 cut(s)	420, 478
CaiI	CAGNNNCTG	1 cut(s)	31
CciI	TCATGA	1 cut(s)	478
CfoI	GCGC	1 cut(s)	20
Cfr13I	GGNCC	2 cut(s)	48, 235
Cfr9I	CCCGGG	1 cut(s)	203
CseI	GACGC	1 cut(s)	527
Csp6I	GTAC	2 cut(s)	158, 523
CviAII	CATG	7 cut(s)	8, 59, 142, 155, 311, 420, 479
CviJI	RGCY	7 cut(s)	79, 266, 282, 338, 381, 445, 620
CviKI_1	RGCY	7 cut(s)	79, 266, 282, 338, 381, 445, 620
CviQI	GTAC	2 cut(s)	158, 523
DdeI	CTNAG	2 cut(s)	66, 606
DpnI	GATC	5 cut(s)	63, 96, 401, 477, 570
DpnII	GATC	5 cut(s)	61, 94, 399, 475, 568
DraIII	CACNNNGTG	1 cut(s)	415
Eam1104I	CTCTTC	1 cut(s)	555
EarI	CTCTTC	1 cut(s)	555
Eco32I	GATATC	1 cut(s)	40
Eco47I	GGWCC	2 cut(s)	48, 235
Eco81I	CCTNAGG	1 cut(s)	66
Eco88I	CYCGRG	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	50
EcoRV	GATATC	1 cut(s)	40
FaeI	CATG	7 cut(s)	11, 62, 145, 158, 314, 423, 482
FaqI	GGGAC	1 cut(s)	196
FatI	CATG	7 cut(s)	7, 58, 141, 154, 310, 419, 478
FbaI	TGATCA	1 cut(s)	475
Fnu4HI	GCNGC	3 cut(s)	537, 540, 632
FokI	GGATG	1 cut(s)	389
Fsp4HI	GCNGC	3 cut(s)	537, 540, 632
FspBI	CTAG	2 cut(s)	354, 621
GlaI	GCGC	1 cut(s)	19
GluI	GCNGC	3 cut(s)	537, 540, 632
GsuI	CTGGAG	2 cut(s)	8, 246
HapII	CCGG	1 cut(s)	204
HgaI	GACGC	1 cut(s)	527
HhaI	GCGC	1 cut(s)	20
Hin1II	CATG	7 cut(s)	11, 62, 145, 158, 314, 423, 482
Hin6I	GCGC	1 cut(s)	18
HinP1I	GCGC	1 cut(s)	18
HincII	GTYRAC	1 cut(s)	627
HindII	GTYRAC	1 cut(s)	627
HinfI	GANTC	2 cut(s)	72, 259
HpaI	GTTAAC	1 cut(s)	627
HpaII	CCGG	1 cut(s)	204
Hpy166II	GTNNAC	1 cut(s)	627
Hpy188I	TCNGA	1 cut(s)	33
Hpy188III	TCNNGA	5 cut(s)	124, 181, 349, 392, 479
Hpy8I	GTNNAC	1 cut(s)	627
Hpy99I	CGWCG	1 cut(s)	467
HpyCH4III	ACNGT	2 cut(s)	371, 473
HpyCH4V	TGCA	1 cut(s)	329
HpyF10VI	GCNNNNNNNGC	3 cut(s)	335, 611, 637
HpyF3I	CTNAG	2 cut(s)	66, 606
Hsp92II	CATG	7 cut(s)	11, 62, 145, 158, 314, 423, 482
HspAI	GCGC	1 cut(s)	18
Ksp22I	TGATCA	1 cut(s)	475
KspAI	GTTAAC	1 cut(s)	627
Kzo9I	GATC	5 cut(s)	61, 94, 399, 475, 568
LmnI	GCTCC	1 cut(s)	168
Lsp1109I	GCAGC	3 cut(s)	523, 526, 618
MaeI	CTAG	2 cut(s)	354, 621
MaeIII	GTNAC	1 cut(s)	590
MalI	GATC	5 cut(s)	63, 96, 401, 477, 570
MboI	GATC	5 cut(s)	61, 94, 399, 475, 568
MboII	GAAGA	5 cut(s)	161, 470, 524, 572, 578
MluCI	AATT	2 cut(s)	83, 387
MluI	ACGCGT	1 cut(s)	519
MlyI	GAGTC	1 cut(s)	253
MnlI	CCTC	2 cut(s)	417, 556
MseI	TTAA	3 cut(s)	383, 432, 626
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	1 cut(s)	204
MspR9I	CCNGG	3 cut(s)	52, 204, 205
MvaI	CCWGG	1 cut(s)	52
MvnI	CGCG	2 cut(s)	18, 521
MwoI	GCNNNNNNNGC	3 cut(s)	335, 611, 637
NciI	CCSGG	2 cut(s)	204, 205
NdeII	GATC	5 cut(s)	61, 94, 399, 475, 568
NlaIII	CATG	7 cut(s)	11, 62, 145, 158, 314, 423, 482
NlaIV	GGNNCC	1 cut(s)	237
NmuCI	GTSAC	1 cut(s)	590
NspI	RCATGY	1 cut(s)	158
NspV	TTCGAA	1 cut(s)	112
PagI	TCATGA	1 cut(s)	478
PciI	ACATGT	1 cut(s)	154
PfeI	GAWTC	1 cut(s)	72
PfoI	TCCNGGA	1 cut(s)	50
PkrI	GCNGC	3 cut(s)	538, 541, 633
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
PscI	ACATGT	1 cut(s)	154
PsiI	TTATAA	1 cut(s)	546
Psp6I	CCWGG	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	50
PspN4I	GGNNCC	1 cut(s)	237
PspPI	GGNCC	2 cut(s)	48, 235
PstNI	CAGNNNCTG	1 cut(s)	31
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	2 cut(s)	159, 524
RsaNI	GTAC	2 cut(s)	158, 523
SaqAI	TTAA	3 cut(s)	383, 432, 626
SatI	GCNGC	3 cut(s)	537, 540, 632
Sau3AI	GATC	5 cut(s)	61, 94, 399, 475, 568
Sau96I	GGNCC	2 cut(s)	48, 235
SchI	GAGTC	1 cut(s)	253
ScrFI	CCNGG	3 cut(s)	52, 204, 205
SetI	ASST	4 cut(s)	268, 284, 447, 626
SfuI	TTCGAA	1 cut(s)	112
SinI	GGWCC	2 cut(s)	48, 235
SmaI	CCCGGG	1 cut(s)	205
Sse9I	AATT	2 cut(s)	83, 387
SspMI	CTAG	2 cut(s)	354, 621
StyD4I	CCNGG	3 cut(s)	50, 202, 203
TaaI	ACNGT	2 cut(s)	371, 473
TaqI	TCGA	2 cut(s)	112, 391
TasI	AATT	2 cut(s)	83, 387
TfiI	GAWTC	1 cut(s)	72
Tru1I	TTAA	3 cut(s)	383, 432, 626
Tru9I	TTAA	3 cut(s)	383, 432, 626
TscAI	CASTG	2 cut(s)	420, 478
TseFI	GTSAC	1 cut(s)	590
TseI	GCWGC	3 cut(s)	536, 539, 631
Tsp45I	GTSAC	1 cut(s)	590
TspDTI	ATGAA	2 cut(s)	17, 525
TspGWI	ACGGA	3 cut(s)	109, 200, 248
TspMI	CCCGGG	1 cut(s)	203
TspRI	CASTG	2 cut(s)	420, 478
VpaK11BI	GGWCC	2 cut(s)	48, 235
XapI	RAATTY	1 cut(s)	83
XceI	RCATGY	1 cut(s)	158
XmaI	CCCGGG	1 cut(s)	203
XspI	CTAG	2 cut(s)	354, 621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.