Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Reverse (-)

4102518 .. 4105788

Gene Structure 3271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g07740.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGAGCAGCGACGACAACAACATCAACATGACCGATCTCGCCGCCGCTTTGAAGGATTCCAACCAGGAAGGAATCCTCAACGCTCTCAAGGGTTTAGCTGGTGGTCAGCATGTGGAGGAAGTCCTGAGAGGTTTATCTCCTAATGTCAGGAAGCGTGTTGATTTCCTTAGGGAAATCCAGAGCCAACATGATGAGTTGGAGACCAAGTTTTTTGAGGAGCGAGCTGCTTTGGAAGCTAAGTATCAGAAGCTGTACCAACCTTTGTACAACAAGCGTTACGAGATTGTAACTGGTGCTGTTGAAGCTGAAGGAGTCACTACTGAAGCATCCACAAATGAAGAGGATGCTGAAGACAAAGGAGTGCCTGATTTCTGGCTGAATGCCTTGAAAAACAATGATGTGCTCTCTGAGGAGATAACAGAGCGTGATGAAGGTGCTCTAAAATATCTGAAGGACATCAAGTGGTCTAGGATAGAAAACCCCAAGGGATTCAAACTCGACTTCTACTTCAACACTAATCCCTATTTTAAGAACACCATCTTGACAAAGACGTATCACATGATTGATGAAGATGAACCTATTCTTGAGAAGGCAATTGGAACCGAGATTGAGTGGTATCCGGGCAAGTGCTTGACACAGAAGATCCTTAAGAAGAAGCCTAAGAAGGGAACAAAGAACAGTAAGCCAATCACAAAAACTGAAGATTGTGAGAGTTTCTTTAACTTTTTTAGTCCACCACAAGTTCCTGAAGAGGATGAAGATATTGATGAAGATGCTGCTGAGGAACTCCAGAATCAGATGGAACAAGATTATGATGTTGGGTCCACTATCCGGGATAAGATCATCCCACATGCGGTCTCCTGGTTTACTGGAGAGGCTATCCAGGATGACGATATAGACATGGATGACGATGATGATGAAGATGAAGATGATGATGACCTGGACGATGAGGAAGATGAGGAAGATGAGGATGAGGACGATGAGGAAGATGAAGGCCAAGCCAAAAAGAAGGGATCAGGTCAGAAGGGTGCGAGAGCACAACTCGGTGATGGTCAACAGGGTGAGAGGCCTCCAGAGTGCAAACAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

364

Amino Acids

41.47

Weight (kDa)

4.27

Isoelectric Point (pI)

47.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	51 - 292	1.9e-89	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	42, 45, 854
AclWI	GGATC	2 cut(s)	637, 1021
AcuI	CTGAAG	6 cut(s)	327, 342, 369, 470, 720, 768
AfaI	GTAC	2 cut(s)	254, 266
AfiI	CCNNNNNNNGG	3 cut(s)	665, 831, 853
AflII	CTTAAG	1 cut(s)	647
AgsI	TTSAA	5 cut(s)	52, 302, 388, 493, 511
AjnI	CCWGG	4 cut(s)	63, 860, 882, 939
AluBI	AGCT	5 cut(s)	98, 224, 236, 250, 305
AluI	AGCT	5 cut(s)	98, 224, 236, 250, 305
Alw21I	GWGCWC	3 cut(s)	405, 439, 1039
Alw26I	GTCTC	2 cut(s)	194, 862
AlwI	GGATC	2 cut(s)	637, 1021
AlwNI	CAGNNNCTG	1 cut(s)	250
AoxI	GGCC	2 cut(s)	994, 1067
ApeKI	GCWGC	3 cut(s)	6, 224, 776
Asp700I	GAANNNNTTC	1 cut(s)	579
AspS9I	GGNCC	1 cut(s)	822
AsuC2I	CCSGG	2 cut(s)	621, 833
AsuHPI	GGTGA	2 cut(s)	1058, 1073
AvaII	GGWCC	1 cut(s)	822
AxyI	CCTNAGG	1 cut(s)	167
BbsI	GAAGAC	1 cut(s)	357
Bbv12I	GWGCWC	3 cut(s)	405, 439, 1039
BbvCI	CCTCAGC	1 cut(s)	780
BbvI	GCAGC	3 cut(s)	18, 211, 763
BccI	CCATC	3 cut(s)	545, 793, 1043
BciT130I	CCWGG	4 cut(s)	65, 862, 884, 941
BciVI	GTATCC	1 cut(s)	627
BcnI	CCSGG	2 cut(s)	621, 833
BcoDI	GTCTC	2 cut(s)	194, 862
BfaI	CTAG	1 cut(s)	468
BfrI	CTTAAG	1 cut(s)	647
BfuI	GTATCC	1 cut(s)	627
BisI	GCNGC	5 cut(s)	7, 42, 45, 225, 777
BlsI	GCNGC	5 cut(s)	8, 43, 46, 226, 778
Bme1390I	CCNGG	6 cut(s)	65, 621, 833, 862, 884, 941
Bme18I	GGWCC	1 cut(s)	822
BmgT120I	GGNCC	1 cut(s)	822
BmiI	GGNNCC	2 cut(s)	601, 823
BmrFI	CCNGG	6 cut(s)	65, 621, 833, 862, 884, 941
BmsI	GCATC	3 cut(s)	334, 335, 763
BpiI	GAAGAC	1 cut(s)	357
BplI	GAGNNNNNCTC	2 cut(s)	1026, 1058
BpmI	CTGGAG	3 cut(s)	773, 891, 1056
Bpu10I	CCTNAGC	1 cut(s)	780
BpuEI	CTTGAG	2 cut(s)	71, 605
BpuMI	CCSGG	2 cut(s)	621, 833
BsaI	GGTCTC	2 cut(s)	194, 862
BsaJI	CCNNGG	1 cut(s)	483
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bsc4I	CCNNNNNNNGG	3 cut(s)	665, 831, 853
Bse1I	ACTGG	2 cut(s)	295, 874
Bse21I	CCTNAGG	1 cut(s)	167
BseBI	CCWGG	4 cut(s)	65, 862, 884, 941
BseDI	CCNNGG	1 cut(s)	483
BseGI	GGATG	7 cut(s)	326, 349, 760, 843, 892, 910, 976
BseLI	CCNNNNNNNGG	3 cut(s)	665, 831, 853
BseMII	CTCAG	3 cut(s)	116, 399, 771
BseNI	ACTGG	2 cut(s)	295, 874
BseRI	GAGGAG	2 cut(s)	230, 425
BseXI	GCAGC	3 cut(s)	18, 211, 763
BshFI	GGCC	2 cut(s)	996, 1069
BsiHKAI	GWGCWC	3 cut(s)	405, 439, 1039
BsiSI	CCGG	2 cut(s)	620, 832
BslI	CCNNNNNNNGG	3 cut(s)	665, 831, 853
BsmAI	GTCTC	2 cut(s)	194, 862
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	2 cut(s)	996, 1069
Bso31I	GGTCTC	2 cut(s)	194, 862
Bsp1286I	GDGCHC	3 cut(s)	405, 439, 1039
Bsp1407I	TGTACA	1 cut(s)	264
Bsp143I	GATC	4 cut(s)	34, 642, 840, 1013
BspACI	CCGC	3 cut(s)	42, 45, 854
BspANI	GGCC	2 cut(s)	996, 1069
BspCNI	CTCAG	3 cut(s)	117, 400, 772
BspLI	GGNNCC	2 cut(s)	601, 823
BspPI	GGATC	2 cut(s)	637, 1021
BspTI	CTTAAG	1 cut(s)	647
BspTNI	GGTCTC	2 cut(s)	194, 862
BsrGI	TGTACA	1 cut(s)	264
BsrI	ACTGG	2 cut(s)	295, 874
BssECI	CCNNGG	1 cut(s)	483
BssMI	GATC	4 cut(s)	34, 642, 840, 1013
BssT1I	CCWWGG	1 cut(s)	483
Bst2UI	CCWGG	4 cut(s)	65, 862, 884, 941
Bst4CI	ACNGT	1 cut(s)	680
Bst6I	CTCTTC	2 cut(s)	333, 744
BstAFI	CTTAAG	1 cut(s)	647
BstAUI	TGTACA	1 cut(s)	264
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	6 cut(s)	125, 167, 237, 408, 660, 780
BstF5I	GGATG	7 cut(s)	326, 349, 760, 843, 892, 910, 976
BstKTI	GATC	4 cut(s)	37, 645, 843, 1016
BstMAI	GTCTC	2 cut(s)	194, 862
BstMBI	GATC	4 cut(s)	34, 642, 840, 1013
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 302
BstNI	CCWGG	4 cut(s)	65, 862, 884, 941
BstNSI	RCATGY	2 cut(s)	113, 854
BstSCI	CCNGG	6 cut(s)	63, 619, 831, 860, 882, 939
BstV1I	GCAGC	3 cut(s)	18, 211, 763
BstV2I	GAAGAC	1 cut(s)	357
BstX2I	RGATCY	1 cut(s)	642
BstYI	RGATCY	1 cut(s)	642
Bsu36I	CCTNAGG	1 cut(s)	167
BsuI	GTATCC	1 cut(s)	627
BsuRI	GGCC	2 cut(s)	996, 1069
BtsCI	GGATG	7 cut(s)	326, 349, 760, 843, 892, 910, 976
Cac8I	GCNNGC	1 cut(s)	222
CaiI	CAGNNNCTG	1 cut(s)	250
Cfr13I	GGNCC	1 cut(s)	822
Csp6I	GTAC	2 cut(s)	253, 265
CviAII	CATG	6 cut(s)	28, 110, 188, 559, 851, 901
CviQI	GTAC	2 cut(s)	253, 265
DdeI	CTNAG	6 cut(s)	125, 167, 237, 408, 660, 780
DpnI	GATC	4 cut(s)	36, 644, 842, 1015
DpnII	GATC	4 cut(s)	34, 642, 840, 1013
Eam1104I	CTCTTC	2 cut(s)	333, 744
EarI	CTCTTC	2 cut(s)	333, 744
Eco130I	CCWWGG	1 cut(s)	483
Eco147I	AGGCCT	1 cut(s)	1069
Eco31I	GGTCTC	2 cut(s)	194, 862
Eco47I	GGWCC	1 cut(s)	822
Eco57I	CTGAAG	6 cut(s)	327, 342, 369, 470, 720, 768
Eco81I	CCTNAGG	1 cut(s)	167
EcoRII	CCWGG	4 cut(s)	63, 860, 882, 939
EcoT14I	CCWWGG	1 cut(s)	483
ErhI	CCWWGG	1 cut(s)	483
FaeI	CATG	6 cut(s)	31, 113, 191, 562, 854, 904
FaiI	YATR	8 cut(s)	29, 111, 189, 560, 813, 852, 896, 902
FatI	CATG	6 cut(s)	27, 109, 187, 558, 850, 900
Fnu4HI	GCNGC	5 cut(s)	7, 42, 45, 225, 777
FokI	GGATG	7 cut(s)	313, 356, 767, 830, 899, 917, 983
Fsp4HI	GCNGC	5 cut(s)	7, 42, 45, 225, 777
FspBI	CTAG	1 cut(s)	468
GluI	GCNGC	5 cut(s)	7, 42, 45, 225, 777
GsuI	CTGGAG	3 cut(s)	773, 891, 1056
HaeIII	GGCC	2 cut(s)	996, 1069
HapII	CCGG	2 cut(s)	620, 832
Hin1II	CATG	6 cut(s)	31, 113, 191, 562, 854, 904
HincII	GTYRAC	1 cut(s)	1055
HindII	GTYRAC	1 cut(s)	1055
HinfI	GANTC	5 cut(s)	56, 72, 312, 489, 793
HpaII	CCGG	2 cut(s)	620, 832
HphI	GGTGA	2 cut(s)	1058, 1073
Hpy166II	GTNNAC	4 cut(s)	734, 825, 867, 1055
Hpy188I	TCNGA	5 cut(s)	246, 409, 450, 798, 1023
Hpy188III	TCNNGA	8 cut(s)	124, 148, 178, 541, 584, 746, 790, 1073
Hpy8I	GTNNAC	4 cut(s)	734, 825, 867, 1055
Hpy99I	CGWCG	1 cut(s)	14
HpyCH4III	ACNGT	1 cut(s)	680
HpyCH4IV	ACGT	1 cut(s)	551
HpyCH4V	TGCA	1 cut(s)	1080
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 302
HpyF3I	CTNAG	6 cut(s)	125, 167, 237, 408, 660, 780
HpySE526I	ACGT	1 cut(s)	551
Hsp92II	CATG	6 cut(s)	31, 113, 191, 562, 854, 904
Kzo9I	GATC	4 cut(s)	34, 642, 840, 1013
LmnI	GCTCC	1 cut(s)	217
Lsp1109I	GCAGC	3 cut(s)	18, 211, 763
LweI	GCATC	3 cut(s)	334, 335, 763
MaeI	CTAG	1 cut(s)	468
MaeII	ACGT	1 cut(s)	551
MaeIII	GTNAC	3 cut(s)	275, 286, 313
MalI	GATC	4 cut(s)	36, 644, 842, 1015
MboI	GATC	4 cut(s)	34, 642, 840, 1013
MfeI	CAATTG	1 cut(s)	594
MflI	RGATCY	1 cut(s)	642
MhlI	GDGCHC	3 cut(s)	405, 439, 1039
MluCI	AATT	1 cut(s)	594
MlyI	GAGTC	1 cut(s)	321
MmeI	TCCRAC	2 cut(s)	84, 177
MroXI	GAANNNNTTC	1 cut(s)	579
MseI	TTAA	3 cut(s)	528, 648, 720
MslI	CAYNNNNRTG	1 cut(s)	26
MspCI	CTTAAG	1 cut(s)	647
MspI	CCGG	2 cut(s)	620, 832
MspR9I	CCNGG	6 cut(s)	65, 621, 833, 862, 884, 941
MunI	CAATTG	1 cut(s)	594
Mva1269I	GAATGC	1 cut(s)	385
MvaI	CCWGG	4 cut(s)	65, 862, 884, 941
MwoI	GCNNNNNNNGC	2 cut(s)	233, 302
NciI	CCSGG	2 cut(s)	621, 833
NdeII	GATC	4 cut(s)	34, 642, 840, 1013
NlaIII	CATG	6 cut(s)	31, 113, 191, 562, 854, 904
NlaIV	GGNNCC	2 cut(s)	601, 823
NmuCI	GTSAC	1 cut(s)	313
NspI	RCATGY	2 cut(s)	113, 854
PceI	AGGCCT	1 cut(s)	1069
PctI	GAATGC	1 cut(s)	385
PdmI	GAANNNNTTC	1 cut(s)	579
PfeI	GAWTC	4 cut(s)	56, 72, 489, 793
PfoI	TCCNGGA	2 cut(s)	831, 882
PkrI	GCNGC	5 cut(s)	8, 43, 46, 226, 778
PleI	GAGTC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	320
Psp6I	CCWGG	4 cut(s)	63, 860, 882, 939
PspGI	CCWGG	4 cut(s)	63, 860, 882, 939
PspN4I	GGNNCC	2 cut(s)	601, 823
PspPI	GGNCC	1 cut(s)	822
PstNI	CAGNNNCTG	1 cut(s)	250
PsuI	RGATCY	1 cut(s)	642
RsaI	GTAC	2 cut(s)	254, 266
RsaNI	GTAC	2 cut(s)	253, 265
RseI	CAYNNNNRTG	1 cut(s)	26
SaqAI	TTAA	3 cut(s)	528, 648, 720
SatI	GCNGC	5 cut(s)	7, 42, 45, 225, 777
Sau3AI	GATC	4 cut(s)	34, 642, 840, 1013
Sau96I	GGNCC	1 cut(s)	822
SchI	GAGTC	1 cut(s)	321
ScrFI	CCNGG	6 cut(s)	65, 621, 833, 862, 884, 941
SduI	GDGCHC	3 cut(s)	405, 439, 1039
SfaNI	GCATC	3 cut(s)	334, 335, 763
SinI	GGWCC	1 cut(s)	822
SmiMI	CAYNNNNRTG	1 cut(s)	26
SmlI	CTYRAG	3 cut(s)	86, 584, 647
SmoI	CTYRAG	3 cut(s)	86, 584, 647
Sse9I	AATT	1 cut(s)	594
SseBI	AGGCCT	1 cut(s)	1069
SsiI	CCGC	3 cut(s)	42, 45, 854
SspMI	CTAG	1 cut(s)	468
StuI	AGGCCT	1 cut(s)	1069
StyD4I	CCNGG	6 cut(s)	63, 619, 831, 860, 882, 939
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	1 cut(s)	680
TaiI	ACGT	1 cut(s)	554
TaqI	TCGA	1 cut(s)	498
TaqII	GACCGA	1 cut(s)	47
TasI	AATT	1 cut(s)	594
TatI	WGTACW	1 cut(s)	264
TauI	GCSGC	2 cut(s)	44, 47
TfiI	GAWTC	4 cut(s)	56, 72, 489, 793
Tru1I	TTAA	3 cut(s)	528, 648, 720
Tru9I	TTAA	3 cut(s)	528, 648, 720
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	3 cut(s)	6, 224, 776
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	9 cut(s)	351, 444, 582, 588, 771, 783, 933, 939, 1005
Vha464I	CTTAAG	1 cut(s)	647
VpaK11BI	GGWCC	1 cut(s)	822
XceI	RCATGY	2 cut(s)	113, 854
XmnI	GAANNNNTTC	1 cut(s)	579
XspI	CTAG	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.