Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Reverse (-)

65707993 .. 65710827

Gene Structure 2835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG453700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGAGTTCCTCTGGATCTGGCTTCAATGGCTCCGACCACAACCTCAATTCCGAGGGAAGAGATCCTGGTCTTACTGCTCAGAAGCAGATTAAGTCTCGGATTACACCCAAGATAGTGAAGCGCGTTCATGTTTTGAGACAGATAGAGGGGCAGCATAAGAAGCTGGAACAACAATTTTTTGAGGACAGAGCTGCACTGGTAGATAAATACCATCAGCTTTACAAACCTCTCTACGAAAAGATAATGGAGCTTGACGAACACGCTCTCCAGTATCTCAAAGATATCAAGTGGTGCAGGATACATGATCCTAAAGGGTTTAGGCTGGAATTCTTATTTGATCCTAATCCTTACTTTCGAAACTCCATCCTGACAAAAACATATTACATGATTGAAGAACATGAGCCCATATGGAGCAAAGAAATCGGGACGGAGATTGATTGGTATCCCGGGCAAAGCTTGACAATCAGTCCAAGAAAGGACCCAAAGAATGCCAAGTCCATGACTGCAGCTGATATTTGTTACAGCTTCTTTACGTTCTTCAAACCTCCCCAACATGATGATTATACCGGGGCAGATATGGTTTCTATGTTCAAGACTAGGATAGAAAACGACCGTGAAATGGGCTTAACAATTCGAGACAAGATCATCCCTTACGCGGTGTCATGGTTCACTGGGGAAGCTGTTAAAGGATACGAGTTTGAAGATGACGATGATAGTGAAGACGATGATGACAGTGACTATTATTTTTACTCTGATAGAGATGATGAGGACGAGGAGGGTGCTGCTGCTGAAGACAAAAAAAGAGAGGAGGAAGATGGCAAAAGAAAGGAATTAAGTAGATGGACTAATGCTGAGAAAGCAATGGCTGTGCTAACGCTGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

294

Amino Acids

34.49

Weight (kDa)

4.98

Isoelectric Point (pI)

43.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	40 - 81	6.2e-06	Nucleosome assembly protein (NAP)
NAP	PF00956	80 - 226	3.5e-39	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	123, 656
AciI	CCGC	1 cut(s)	656
AclWI	GGATC	4 cut(s)	22, 56, 299, 332
AcsI	RAATTY	1 cut(s)	326
AcuI	CTGAAG	1 cut(s)	810
AfiI	CCNNNNNNNGG	2 cut(s)	619, 655
AgsI	TTSAA	5 cut(s)	25, 392, 541, 592, 701
AhdI	GACNNNNNGTC	1 cut(s)	465
AjnI	CCWGG	1 cut(s)	64
AloI	GAACNNNNNNTCC	2 cut(s)	249, 281
AluBI	AGCT	8 cut(s)	163, 191, 217, 250, 456, 509, 525, 680
AluI	AGCT	8 cut(s)	163, 191, 217, 250, 456, 509, 525, 680
Alw26I	GTCTC	3 cut(s)	99, 130, 630
AlwI	GGATC	4 cut(s)	22, 56, 299, 332
Ama87I	CYCGRG	1 cut(s)	446
ApeKI	GCWGC	6 cut(s)	151, 191, 506, 782, 785, 877
ApoI	RAATTY	1 cut(s)	326
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	478
AsuC2I	CCSGG	3 cut(s)	447, 448, 568
AsuII	TTCGAA	1 cut(s)	355
AvaI	CYCGRG	1 cut(s)	446
AvaII	GGWCC	1 cut(s)	478
BanII	GRGCYC	1 cut(s)	405
BbsI	GAAGAC	2 cut(s)	726, 798
BbvI	GCAGC	6 cut(s)	163, 178, 518, 769, 772, 864
BccI	CCATC	4 cut(s)	219, 371, 809, 834
BcgI	CGANNNNNNTGC	4 cut(s)	403, 437, 761, 795
BciT130I	CCWGG	1 cut(s)	66
BciVI	GTATCC	3 cut(s)	291, 453, 683
BcnI	CCSGG	3 cut(s)	447, 448, 568
BcoDI	GTCTC	3 cut(s)	99, 130, 630
BfaI	CTAG	1 cut(s)	597
BfmI	CTRYAG	1 cut(s)	504
BfuI	GTATCC	3 cut(s)	291, 453, 683
BisI	GCNGC	6 cut(s)	152, 192, 507, 783, 786, 878
BlsI	GCNGC	6 cut(s)	153, 193, 508, 784, 787, 879
Bme1390I	CCNGG	4 cut(s)	66, 447, 448, 568
Bme18I	GGWCC	1 cut(s)	478
BmeRI	GACNNNNNGTC	1 cut(s)	465
BmeT110I	CYCGRG	1 cut(s)	446
BmgT120I	GGNCC	1 cut(s)	478
BmiI	GGNNCC	2 cut(s)	31, 480
BmrFI	CCNGG	4 cut(s)	66, 447, 448, 568
BmrI	ACTGGG	1 cut(s)	681
BmuI	ACTGGG	1 cut(s)	681
BpiI	GAAGAC	2 cut(s)	726, 798
BpmI	CTGGAG	1 cut(s)	251
Bpu14I	TTCGAA	1 cut(s)	355
BpuMI	CCSGG	3 cut(s)	447, 448, 568
BsaBI	GATNNNNATC	2 cut(s)	342, 441
BsaJI	CCNNGG	3 cut(s)	51, 446, 567
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	2 cut(s)	619, 655
Bse1I	ACTGG	3 cut(s)	201, 268, 676
Bse3DI	GCAATG	1 cut(s)	867
Bse8I	GATNNNNATC	2 cut(s)	342, 441
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	3 cut(s)	51, 446, 567
BseGI	GGATG	2 cut(s)	363, 645
BseJI	GATNNNNATC	2 cut(s)	342, 441
BseLI	CCNNNNNNNGG	2 cut(s)	619, 655
BseMI	GCAATG	1 cut(s)	867
BseMII	CTCAG	2 cut(s)	92, 843
BseNI	ACTGG	3 cut(s)	201, 268, 676
BseRI	GAGGAG	2 cut(s)	788, 821
BseXI	GCAGC	6 cut(s)	163, 178, 518, 769, 772, 864
BsgI	GTGCAG	2 cut(s)	177, 313
Bsh1236I	CGCG	2 cut(s)	123, 656
Bsh1285I	CGRYCG	1 cut(s)	613
BsiEI	CGRYCG	1 cut(s)	613
BsiHKCI	CYCGRG	1 cut(s)	446
BsiSI	CCGG	2 cut(s)	447, 567
BslFI	GGGAC	1 cut(s)	439
BslI	CCNNNNNNNGG	2 cut(s)	619, 655
BsmAI	GTCTC	3 cut(s)	99, 130, 630
BsmFI	GGGAC	1 cut(s)	439
BsmI	GAATGC	1 cut(s)	493
BsoBI	CYCGRG	1 cut(s)	446
Bsp119I	TTCGAA	1 cut(s)	355
Bsp1286I	GDGCHC	1 cut(s)	405
Bsp143I	GATC	5 cut(s)	14, 61, 304, 337, 642
BspACI	CCGC	1 cut(s)	656
BspCNI	CTCAG	2 cut(s)	91, 844
BspFNI	CGCG	2 cut(s)	123, 656
BspLI	GGNNCC	2 cut(s)	31, 480
BspMAI	CTGCAG	1 cut(s)	508
BspPI	GGATC	4 cut(s)	22, 56, 299, 332
BspT104I	TTCGAA	1 cut(s)	355
BsrDI	GCAATG	1 cut(s)	867
BsrI	ACTGG	3 cut(s)	201, 268, 676
BssECI	CCNNGG	3 cut(s)	51, 446, 567
BssMI	GATC	5 cut(s)	14, 61, 304, 337, 642
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	2 cut(s)	614, 734
Bst6I	CTCTTC	1 cut(s)	52
BstBI	TTCGAA	1 cut(s)	355
BstDEI	CTNAG	2 cut(s)	78, 852
BstF5I	GGATG	2 cut(s)	363, 645
BstFNI	CGCG	2 cut(s)	123, 656
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	5 cut(s)	17, 64, 307, 340, 645
BstMAI	GTCTC	3 cut(s)	99, 130, 630
BstMBI	GATC	5 cut(s)	14, 61, 304, 337, 642
BstMCI	CGRYCG	1 cut(s)	613
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 160, 857, 877
BstNI	CCWGG	1 cut(s)	66
BstSCI	CCNGG	4 cut(s)	64, 445, 446, 566
BstSFI	CTRYAG	1 cut(s)	504
BstUI	CGCG	2 cut(s)	123, 656
BstV1I	GCAGC	6 cut(s)	163, 178, 518, 769, 772, 864
BstV2I	GAAGAC	2 cut(s)	726, 798
BstX2I	RGATCY	2 cut(s)	14, 61
BstYI	RGATCY	2 cut(s)	14, 61
BsuI	GTATCC	3 cut(s)	291, 453, 683
BtsCI	GGATG	2 cut(s)	363, 645
BtsIMutI	CAGTG	3 cut(s)	194, 669, 739
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	478
Cfr9I	CCCGGG	1 cut(s)	446
CviAII	CATG	7 cut(s)	128, 302, 385, 398, 499, 554, 663
DdeI	CTNAG	2 cut(s)	78, 852
DpnI	GATC	5 cut(s)	16, 63, 306, 339, 644
DpnII	GATC	5 cut(s)	14, 61, 304, 337, 642
DriI	GACNNNNNGTC	1 cut(s)	465
Eam1104I	CTCTTC	1 cut(s)	52
Eam1105I	GACNNNNNGTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	405
Eco32I	GATATC	1 cut(s)	283
Eco47I	GGWCC	1 cut(s)	478
Eco57I	CTGAAG	1 cut(s)	810
Eco88I	CYCGRG	1 cut(s)	446
EcoO109I	RGGNCCY	1 cut(s)	478
EcoRI	GAATTC	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	64
EcoRV	GATATC	1 cut(s)	283
EcoT38I	GRGCYC	1 cut(s)	405
FaeI	CATG	7 cut(s)	131, 305, 388, 401, 502, 557, 666
FaqI	GGGAC	1 cut(s)	439
FatI	CATG	7 cut(s)	127, 301, 384, 397, 498, 553, 662
FauNDI	CATATG	1 cut(s)	407
Fnu4HI	GCNGC	6 cut(s)	152, 192, 507, 783, 786, 878
FokI	GGATG	2 cut(s)	350, 632
FriOI	GRGCYC	1 cut(s)	405
Fsp4HI	GCNGC	6 cut(s)	152, 192, 507, 783, 786, 878
FspBI	CTAG	1 cut(s)	597
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	6 cut(s)	152, 192, 507, 783, 786, 878
GsuI	CTGGAG	1 cut(s)	251
HapII	CCGG	2 cut(s)	447, 567
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	7 cut(s)	131, 305, 388, 401, 502, 557, 666
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	454
HpaII	CCGG	2 cut(s)	447, 567
Hpy166II	GTNNAC	1 cut(s)	669
Hpy188I	TCNGA	5 cut(s)	34, 52, 81, 99, 754
Hpy188III	TCNNGA	5 cut(s)	12, 367, 424, 592, 635
Hpy8I	GTNNAC	1 cut(s)	669
HpyCH4III	ACNGT	2 cut(s)	614, 734
HpyCH4IV	ACGT	1 cut(s)	533
HpyCH4V	TGCA	4 cut(s)	194, 294, 506, 880
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 160, 857, 877
HpyF3I	CTNAG	2 cut(s)	78, 852
HpySE526I	ACGT	1 cut(s)	533
Hsp92II	CATG	7 cut(s)	131, 305, 388, 401, 502, 557, 666
HspAI	GCGC	1 cut(s)	121
Kzo9I	GATC	5 cut(s)	14, 61, 304, 337, 642
LmnI	GCTCC	3 cut(s)	35, 247, 411
Lsp1109I	GCAGC	6 cut(s)	163, 178, 518, 769, 772, 864
MaeI	CTAG	1 cut(s)	597
MaeII	ACGT	1 cut(s)	533
MaeIII	GTNAC	2 cut(s)	518, 734
MalI	GATC	5 cut(s)	16, 63, 306, 339, 644
MboI	GATC	5 cut(s)	14, 61, 304, 337, 642
MboII	GAAGA	7 cut(s)	69, 404, 529, 713, 731, 803, 824
MflI	RGATCY	2 cut(s)	14, 61
MhlI	GDGCHC	1 cut(s)	405
MluCI	AATT	5 cut(s)	46, 173, 326, 630, 830
MmeI	TCCRAC	1 cut(s)	57
MseI	TTAA	4 cut(s)	90, 626, 684, 833
MspA1I	CMGCKG	1 cut(s)	509
MspI	CCGG	2 cut(s)	447, 567
MspR9I	CCNGG	4 cut(s)	66, 447, 448, 568
Mva1269I	GAATGC	1 cut(s)	493
MvaI	CCWGG	1 cut(s)	66
MvnI	CGCG	2 cut(s)	123, 656
MwoI	GCNNNNNNNGC	4 cut(s)	27, 160, 857, 877
NciI	CCSGG	3 cut(s)	447, 448, 568
NdeI	CATATG	1 cut(s)	407
NdeII	GATC	5 cut(s)	14, 61, 304, 337, 642
NlaIII	CATG	7 cut(s)	131, 305, 388, 401, 502, 557, 666
NlaIV	GGNNCC	2 cut(s)	31, 480
NmuCI	GTSAC	1 cut(s)	734
NspV	TTCGAA	1 cut(s)	355
PctI	GAATGC	1 cut(s)	493
PkrI	GCNGC	6 cut(s)	153, 193, 508, 784, 787, 879
PpuMI	RGGWCCY	1 cut(s)	478
Psp5II	RGGWCCY	1 cut(s)	478
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	2 cut(s)	31, 480
PspPI	GGNCC	1 cut(s)	478
PspPPI	RGGWCCY	1 cut(s)	478
PstI	CTGCAG	1 cut(s)	508
PsuI	RGATCY	2 cut(s)	14, 61
PvuII	CAGCTG	1 cut(s)	509
SaqAI	TTAA	4 cut(s)	90, 626, 684, 833
SatI	GCNGC	6 cut(s)	152, 192, 507, 783, 786, 878
Sau3AI	GATC	5 cut(s)	14, 61, 304, 337, 642
Sau96I	GGNCC	1 cut(s)	478
ScrFI	CCNGG	4 cut(s)	66, 447, 448, 568
SduI	GDGCHC	1 cut(s)	405
SfcI	CTRYAG	1 cut(s)	504
SfuI	TTCGAA	1 cut(s)	355
SinI	GGWCC	1 cut(s)	478
SmaI	CCCGGG	1 cut(s)	448
Sse9I	AATT	5 cut(s)	46, 173, 326, 630, 830
SsiI	CCGC	1 cut(s)	656
SspMI	CTAG	1 cut(s)	597
StyD4I	CCNGG	4 cut(s)	64, 445, 446, 566
TaaI	ACNGT	2 cut(s)	614, 734
TaiI	ACGT	1 cut(s)	536
TaqI	TCGA	2 cut(s)	355, 634
TasI	AATT	5 cut(s)	46, 173, 326, 630, 830
Tru1I	TTAA	4 cut(s)	90, 626, 684, 833
Tru9I	TTAA	4 cut(s)	90, 626, 684, 833
TscAI	CASTG	3 cut(s)	201, 676, 739
TseFI	GTSAC	1 cut(s)	734
TseI	GCWGC	6 cut(s)	151, 191, 506, 782, 785, 877
Tsp45I	GTSAC	1 cut(s)	734
TspDTI	ATGAA	1 cut(s)	116
TspGWI	ACGGA	1 cut(s)	443
TspMI	CCCGGG	1 cut(s)	446
TspRI	CASTG	3 cut(s)	201, 676, 739
VpaK11BI	GGWCC	1 cut(s)	478
XapI	RAATTY	1 cut(s)	326
XmaI	CCCGGG	1 cut(s)	446
XspI	CTAG	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.