Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Reverse (-)

57644015 .. 57646851

Gene Structure 2837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG421800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGAGTTCCTCTGGATCTGGCTTCAATGGCTCCGACCACAACCTCAATTCCGAGGGAAGAGATCCTGGTCTTACTGCTCAGAAGCAGATAATGGAGCTTGACGAACACGCTCTCCAGTATCTCAAAGATATCAAGTGGTGCAGGATACATGATCCTAAAGGGTTTAGGCTGGAATTCTTATTTGATCCTAATCCTTACTTTCGAAACTCCGTCCTGACAAAAACATATTACATGATTGAAGAACATGAGCCCATATGGAGCAAAGAAATCGGGACGGAGATTGATTGGTATCCCGGGCAAAGCTTGACAATCAGTCCAAGAAAAGACCCAAAGAATGCCAAGTCCATGACTGCAGCTGATATTTGTTACAGCTTCTTTACGTTCTTCAAACCTCCCCAACATGATGATTATACCGGGGCAGATATGGTTTCTATGTTCAAGACTAGGATAGAAAACGACCGTGAAATGGGGTACGAATTAAGTAGCTGGACTAATGCTGAGAGAGCAATGGCTGGGCTAACGCTGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

176

Amino Acids

20.34

Weight (kDa)

5.22

Isoelectric Point (pI)

36.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	27 - 160	1e-30	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	22, 56, 146, 179
AcsI	RAATTY	1 cut(s)	173
AfaI	GTAC	1 cut(s)	473
AfiI	CCNNNNNNNGG	1 cut(s)	466
AgsI	TTSAA	4 cut(s)	25, 239, 388, 439
AhdI	GACNNNNNGTC	1 cut(s)	312
AjnI	CCWGG	1 cut(s)	64
AloI	GAACNNNNNNTCC	2 cut(s)	96, 128
AluBI	AGCT	5 cut(s)	97, 303, 356, 372, 486
AluI	AGCT	5 cut(s)	97, 303, 356, 372, 486
AlwI	GGATC	4 cut(s)	22, 56, 146, 179
Ama87I	CYCGRG	1 cut(s)	293
ApeKI	GCWGC	2 cut(s)	353, 523
ApoI	RAATTY	1 cut(s)	173
AsuC2I	CCSGG	3 cut(s)	294, 295, 415
AsuII	TTCGAA	1 cut(s)	202
AvaI	CYCGRG	1 cut(s)	293
BanII	GRGCYC	1 cut(s)	252
BbvI	GCAGC	2 cut(s)	365, 510
BcgI	CGANNNNNNTGC	2 cut(s)	250, 284
BciT130I	CCWGG	1 cut(s)	66
BciVI	GTATCC	2 cut(s)	138, 300
BcnI	CCSGG	3 cut(s)	294, 295, 415
BfaI	CTAG	1 cut(s)	444
BfmI	CTRYAG	1 cut(s)	351
BfuI	GTATCC	2 cut(s)	138, 300
BisI	GCNGC	2 cut(s)	354, 524
BlsI	GCNGC	2 cut(s)	355, 525
Bme1390I	CCNGG	4 cut(s)	66, 294, 295, 415
BmeRI	GACNNNNNGTC	1 cut(s)	312
BmeT110I	CYCGRG	1 cut(s)	293
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	4 cut(s)	66, 294, 295, 415
BpmI	CTGGAG	1 cut(s)	98
Bpu14I	TTCGAA	1 cut(s)	202
BpuMI	CCSGG	3 cut(s)	294, 295, 415
BsaBI	GATNNNNATC	2 cut(s)	189, 288
BsaJI	CCNNGG	3 cut(s)	51, 293, 414
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	1 cut(s)	466
Bse1I	ACTGG	1 cut(s)	115
Bse3DI	GCAATG	1 cut(s)	513
Bse8I	GATNNNNATC	2 cut(s)	189, 288
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	3 cut(s)	51, 293, 414
BseJI	GATNNNNATC	2 cut(s)	189, 288
BseLI	CCNNNNNNNGG	1 cut(s)	466
BseMI	GCAATG	1 cut(s)	513
BseMII	CTCAG	2 cut(s)	92, 489
BseNI	ACTGG	1 cut(s)	115
BseXI	GCAGC	2 cut(s)	365, 510
BseYI	CCCAGC	1 cut(s)	512
BsgI	GTGCAG	1 cut(s)	160
Bsh1285I	CGRYCG	1 cut(s)	460
BsiEI	CGRYCG	1 cut(s)	460
BsiHKCI	CYCGRG	1 cut(s)	293
BsiSI	CCGG	2 cut(s)	294, 414
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	1 cut(s)	466
BsmFI	GGGAC	1 cut(s)	286
BsmI	GAATGC	1 cut(s)	340
BsoBI	CYCGRG	1 cut(s)	293
Bsp119I	TTCGAA	1 cut(s)	202
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	4 cut(s)	14, 61, 151, 184
BspCNI	CTCAG	2 cut(s)	91, 490
BspLI	GGNNCC	1 cut(s)	31
BspMAI	CTGCAG	1 cut(s)	355
BspPI	GGATC	4 cut(s)	22, 56, 146, 179
BspT104I	TTCGAA	1 cut(s)	202
BsrDI	GCAATG	1 cut(s)	513
BsrI	ACTGG	1 cut(s)	115
BssECI	CCNNGG	3 cut(s)	51, 293, 414
BssMI	GATC	4 cut(s)	14, 61, 151, 184
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	461
Bst6I	CTCTTC	1 cut(s)	52
BstBI	TTCGAA	1 cut(s)	202
BstDEI	CTNAG	2 cut(s)	78, 498
BstKTI	GATC	4 cut(s)	17, 64, 154, 187
BstMBI	GATC	4 cut(s)	14, 61, 151, 184
BstMCI	CGRYCG	1 cut(s)	460
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 503, 523
BstNI	CCWGG	1 cut(s)	66
BstSCI	CCNGG	4 cut(s)	64, 292, 293, 413
BstSFI	CTRYAG	1 cut(s)	351
BstV1I	GCAGC	2 cut(s)	365, 510
BstX2I	RGATCY	2 cut(s)	14, 61
BstYI	RGATCY	2 cut(s)	14, 61
BsuI	GTATCC	2 cut(s)	138, 300
Cfr9I	CCCGGG	1 cut(s)	293
Csp6I	GTAC	1 cut(s)	472
CviAII	CATG	5 cut(s)	149, 232, 245, 346, 401
CviQI	GTAC	1 cut(s)	472
DdeI	CTNAG	2 cut(s)	78, 498
DpnI	GATC	4 cut(s)	16, 63, 153, 186
DpnII	GATC	4 cut(s)	14, 61, 151, 184
DriI	GACNNNNNGTC	1 cut(s)	312
Eam1104I	CTCTTC	1 cut(s)	52
Eam1105I	GACNNNNNGTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	252
Eco32I	GATATC	1 cut(s)	130
Eco88I	CYCGRG	1 cut(s)	293
EcoRI	GAATTC	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	64
EcoRV	GATATC	1 cut(s)	130
EcoT38I	GRGCYC	1 cut(s)	252
FaeI	CATG	5 cut(s)	152, 235, 248, 349, 404
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	5 cut(s)	148, 231, 244, 345, 400
FauNDI	CATATG	1 cut(s)	254
Fnu4HI	GCNGC	2 cut(s)	354, 524
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	2 cut(s)	354, 524
FspBI	CTAG	1 cut(s)	444
GluI	GCNGC	2 cut(s)	354, 524
GsaI	CCCAGC	1 cut(s)	516
GsuI	CTGGAG	1 cut(s)	98
HapII	CCGG	2 cut(s)	294, 414
Hin1II	CATG	5 cut(s)	152, 235, 248, 349, 404
HindIII	AAGCTT	1 cut(s)	301
HpaII	CCGG	2 cut(s)	294, 414
Hpy188I	TCNGA	3 cut(s)	34, 52, 81
Hpy188III	TCNNGA	4 cut(s)	12, 214, 271, 439
HpyCH4III	ACNGT	1 cut(s)	461
HpyCH4IV	ACGT	1 cut(s)	380
HpyCH4V	TGCA	3 cut(s)	141, 353, 526
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 503, 523
HpyF3I	CTNAG	2 cut(s)	78, 498
HpySE526I	ACGT	1 cut(s)	380
Hsp92II	CATG	5 cut(s)	152, 235, 248, 349, 404
Kzo9I	GATC	4 cut(s)	14, 61, 151, 184
LmnI	GCTCC	3 cut(s)	35, 94, 258
Lsp1109I	GCAGC	2 cut(s)	365, 510
MaeI	CTAG	1 cut(s)	444
MaeII	ACGT	1 cut(s)	380
MaeIII	GTNAC	1 cut(s)	365
MalI	GATC	4 cut(s)	16, 63, 153, 186
MboI	GATC	4 cut(s)	14, 61, 151, 184
MboII	GAAGA	3 cut(s)	69, 251, 376
MflI	RGATCY	2 cut(s)	14, 61
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	3 cut(s)	46, 173, 476
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	4 cut(s)	19, 46, 53, 402
MseI	TTAA	1 cut(s)	479
MspA1I	CMGCKG	1 cut(s)	356
MspI	CCGG	2 cut(s)	294, 414
MspR9I	CCNGG	4 cut(s)	66, 294, 295, 415
Mva1269I	GAATGC	1 cut(s)	340
MvaI	CCWGG	1 cut(s)	66
MwoI	GCNNNNNNNGC	3 cut(s)	27, 503, 523
NciI	CCSGG	3 cut(s)	294, 295, 415
NdeI	CATATG	1 cut(s)	254
NdeII	GATC	4 cut(s)	14, 61, 151, 184
NlaIII	CATG	5 cut(s)	152, 235, 248, 349, 404
NlaIV	GGNNCC	1 cut(s)	31
NspV	TTCGAA	1 cut(s)	202
PctI	GAATGC	1 cut(s)	340
PkrI	GCNGC	2 cut(s)	355, 525
Psp6I	CCWGG	1 cut(s)	64
PspFI	CCCAGC	1 cut(s)	512
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	31
PstI	CTGCAG	1 cut(s)	355
PsuI	RGATCY	2 cut(s)	14, 61
PvuII	CAGCTG	1 cut(s)	356
RsaI	GTAC	1 cut(s)	473
RsaNI	GTAC	1 cut(s)	472
SaqAI	TTAA	1 cut(s)	479
SatI	GCNGC	2 cut(s)	354, 524
Sau3AI	GATC	4 cut(s)	14, 61, 151, 184
ScrFI	CCNGG	4 cut(s)	66, 294, 295, 415
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	8 cut(s)	45, 99, 305, 358, 374, 383, 394, 488
SfcI	CTRYAG	1 cut(s)	351
SfuI	TTCGAA	1 cut(s)	202
SmaI	CCCGGG	1 cut(s)	295
Sse9I	AATT	3 cut(s)	46, 173, 476
SspMI	CTAG	1 cut(s)	444
StyD4I	CCNGG	4 cut(s)	64, 292, 293, 413
TaaI	ACNGT	1 cut(s)	461
TaiI	ACGT	1 cut(s)	383
TaqI	TCGA	1 cut(s)	202
TasI	AATT	3 cut(s)	46, 173, 476
Tru1I	TTAA	1 cut(s)	479
Tru9I	TTAA	1 cut(s)	479
TseI	GCWGC	2 cut(s)	353, 523
TspGWI	ACGGA	2 cut(s)	199, 290
TspMI	CCCGGG	1 cut(s)	293
XapI	RAATTY	1 cut(s)	173
XmaI	CCCGGG	1 cut(s)	293
XspI	CTAG	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.