pycom02g06460

Belongs to the nucleosome assembly protein (NAP) family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
4506420 .. 4509160
2741 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g06460.9

Sequence Viewer

Length: 1110 bp
ATGGGCAGCGATAAGGATAACATCAACATGTCCGATCTCTCCTCAGCTCTCAACGACGTGGATCGAGCAGGCCTCGTCAATGCTCTCAAGAATAAGATAGAGAGTTTGGCCGGGCAGCACTCTGATATCCTCGAGAGCTTATCTCCTGCAGTCCGAAAGCGGGTCGATGTCCTTAGAGAGATTCAGACCCAACATGATGAACTTGAGGCAAAGTTTTTCGAGGAGAGAGCAGCTCTTGAAGCCAAATATCAGAAATTGTATCAACCTTTGTATACCAAGAGATACGAGATTGTAAATTGTGTTGTTGAAGCTGAAGGAGTCACTAATGAAGCAGTAACAACAGAAGAGGGTAAAGATTCTGAAGAAAAAGGAGTGCCTGATTTCTGGCTCAACGCAATGAAGAACAATGAAGTGCTAGCTGAGGAGATATCTGAGCGTGATGAAGGGGCTCTTAAATATCTTAGAGACATCAAGTGGTTTAGGATAGATAACCCTAAGGGCTTCAAACTGGAGTTCTACTTTGACACCAATCCCTATTTTAAGAACTCTATCTTGACAAAGACATACCACATGATTGATGAAAATGAACCCATTCTCGAGAAAGCAATAGGGACGGAGATTGAATGGTATCCTTCTAAATGCTTGACACAAAAGCTCCTTAAGAAGAAGCCTAAGAAGGGATCGAAGAATGCTAAGCCAATAACTAGAACTGAAAATTGCGAAAGTTTCTTCAACTTTTTCAGTCCGCCTCAAGTCCCTGAGGACGACGAAGATATTGATGAGGATGTTGCCGAGGAACTCCAAAACCAGATGGAAAATGATTATGACATTGGGTCTACCATTCGAGATAAGATCATACCCCATGCTGTTTCATGGTATACTGGAGAGGCCATTGAGGGAGAAGATTTTGGAGACTTGGAAGAAGATGAAGAAGATGAAGATGACGAAGAGGAAGATGAAGATGATGAGGATGAAGAAGACGAGGAAGATGATGAAGACGATGAAGATGAAGGCAAAACCAAAAAGAAGACATCGGCTAGCCACAAGAAGAGTGCAAGAGCACCAACCGGGGAGCAGGGTGAAAGGCCTCCAGAATGCAAACAGCAGTAG

Protein Analysis

370

Amino Acids

42.44

Weight (kDa)

4.38

Isoelectric Point (pI)

48.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000381)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 272, 836, 878
AciI CCGC 2 cut(s) 160, 746
AclWI GGATC 2 cut(s) 69, 688
AcoI YGGCCR 1 cut(s) 108
AcuI CTGAAG 2 cut(s) 333, 381
AfiI CCNNNNNNNGG 2 cut(s) 160, 677
AflII CTTAAG 1 cut(s) 659
AflIII ACRYGT 1 cut(s) 27
AgsI TTSAA 5 cut(s) 239, 308, 505, 623, 733
AhdI GACNNNNNGTC 1 cut(s) 832
AjiI CACGTC 1 cut(s) 58
AluBI AGCT 6 cut(s) 47, 138, 233, 311, 419, 655
AluI AGCT 6 cut(s) 47, 138, 233, 311, 419, 655
Alw21I GWGCWC 1 cut(s) 1063
Alw26I GTCTC 2 cut(s) 459, 906
AlwI GGATC 2 cut(s) 69, 688
Ama87I CYCGRG 2 cut(s) 131, 596
AoxI GGCC 4 cut(s) 70, 108, 888, 1085
ApeKI GCWGC 3 cut(s) 6, 115, 230
Asp700I GAANNNNTTC 1 cut(s) 591
AsuC2I CCSGG 2 cut(s) 112, 1069
AsuHPI GGTGA 1 cut(s) 1091
AsuNHI GCTAGC 2 cut(s) 415, 1037
AvaI CYCGRG 2 cut(s) 131, 596
AxyI CCTNAGG 2 cut(s) 495, 759
BanII GRGCYC 1 cut(s) 451
BbsI GAAGAC 3 cut(s) 984, 1002, 1034
Bbv12I GWGCWC 1 cut(s) 1063
BbvCI CCTCAGC 2 cut(s) 43, 420
BbvI GCAGC 3 cut(s) 18, 127, 242
BccI CCATC 1 cut(s) 805
BciVI GTATCC 1 cut(s) 639
BcnI CCSGG 2 cut(s) 112, 1069
BcoDI GTCTC 2 cut(s) 459, 906
BfaI CTAG 3 cut(s) 416, 705, 1038
BfmI CTRYAG 1 cut(s) 147
BfrI CTTAAG 1 cut(s) 659
BfuI GTATCC 1 cut(s) 639
BisI GCNGC 3 cut(s) 7, 116, 231
BlpI GCTNAGC 1 cut(s) 693
BlsI GCNGC 3 cut(s) 8, 117, 232
Bme1390I CCNGG 2 cut(s) 112, 1069
BmeRI GACNNNNNGTC 1 cut(s) 832
BmeT110I CYCGRG 2 cut(s) 131, 596
BmgBI CACGTC 1 cut(s) 58
BmrFI CCNGG 2 cut(s) 112, 1069
BmtI GCTAGC 2 cut(s) 419, 1041
BpiI GAAGAC 3 cut(s) 984, 1002, 1034
BplI GAGNNNNNCTC 6 cut(s) 57, 89, 127, 159, 217, 249
BpmI CTGGAG 3 cut(s) 530, 903, 1074
Bpu10I CCTNAGC 2 cut(s) 43, 420
Bpu1102I GCTNAGC 1 cut(s) 693
BpuEI CTTGAG 3 cut(s) 71, 224, 735
BpuMI CCSGG 2 cut(s) 112, 1069
BsaJI CCNNGG 2 cut(s) 792, 1068
BsaXI ACNNNNNCTCC 2 cut(s) 639, 669
Bsc4I CCNNNNNNNGG 2 cut(s) 160, 677
Bse1I ACTGG 2 cut(s) 513, 886
Bse21I CCTNAGG 2 cut(s) 495, 759
Bse3DI GCAATG 1 cut(s) 402
BseDI CCNNGG 2 cut(s) 792, 1068
BseGI GGATG 2 cut(s) 790, 976
BseLI CCNNNNNNNGG 2 cut(s) 160, 677
BseMI GCAATG 1 cut(s) 402
BseMII CTCAG 4 cut(s) 57, 411, 423, 750
BseNI ACTGG 2 cut(s) 513, 886
BseRI GAGGAG 3 cut(s) 31, 236, 437
BseXI GCAGC 3 cut(s) 18, 127, 242
BshFI GGCC 4 cut(s) 72, 110, 890, 1087
BsiHKAI GWGCWC 1 cut(s) 1063
BsiHKCI CYCGRG 2 cut(s) 131, 596
BsiSI CCGG 2 cut(s) 111, 1068
BslFI GGGAC 2 cut(s) 625, 740
BslI CCNNNNNNNGG 2 cut(s) 160, 677
BsmAI GTCTC 2 cut(s) 459, 906
BsmFI GGGAC 2 cut(s) 625, 740
BsmI GAATGC 2 cut(s) 694, 1100
BsnI GGCC 4 cut(s) 72, 110, 890, 1087
BsoBI CYCGRG 2 cut(s) 131, 596
Bsp1286I GDGCHC 2 cut(s) 451, 1063
Bsp143I GATC 4 cut(s) 34, 61, 680, 852
Bsp1720I GCTNAGC 1 cut(s) 693
BspACI CCGC 2 cut(s) 160, 746
BspANI GGCC 4 cut(s) 72, 110, 890, 1087
BspCNI CTCAG 4 cut(s) 56, 412, 424, 751
BspMAI CTGCAG 1 cut(s) 151
BspOI GCTAGC 2 cut(s) 419, 1041
BspPI GGATC 2 cut(s) 69, 688
BspTI CTTAAG 1 cut(s) 659
BsrDI GCAATG 1 cut(s) 402
BsrI ACTGG 2 cut(s) 513, 886
BssECI CCNNGG 2 cut(s) 792, 1068
BssMI GATC 4 cut(s) 34, 61, 680, 852
BssNAI GTATAC 2 cut(s) 273, 879
Bst1107I GTATAC 2 cut(s) 273, 879
Bst6I CTCTTC 3 cut(s) 339, 942, 1043
BstAFI CTTAAG 1 cut(s) 659
BstC8I GCNNGC 3 cut(s) 70, 417, 1039
BstDEI CTNAG 9 cut(s) 43, 173, 420, 432, 461, 495, 672, 693, 759
BstF5I GGATG 2 cut(s) 790, 976
BstKTI GATC 4 cut(s) 37, 64, 683, 855
BstMAI GTCTC 2 cut(s) 459, 906
BstMBI GATC 4 cut(s) 34, 61, 680, 852
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 31
BstSCI CCNGG 2 cut(s) 110, 1067
BstSFI CTRYAG 1 cut(s) 147
BstV1I GCAGC 3 cut(s) 18, 127, 242
BstV2I GAAGAC 3 cut(s) 984, 1002, 1034
BstZ17I GTATAC 2 cut(s) 273, 879
Bsu36I CCTNAGG 2 cut(s) 495, 759
BsuI GTATCC 1 cut(s) 639
BsuRI GGCC 4 cut(s) 72, 110, 890, 1087
BtrI CACGTC 1 cut(s) 58
BtsCI GGATG 2 cut(s) 790, 976
Cac8I GCNNGC 3 cut(s) 70, 417, 1039
CviAII CATG 5 cut(s) 28, 194, 571, 863, 873
DdeI CTNAG 9 cut(s) 43, 173, 420, 432, 461, 495, 672, 693, 759
DpnI GATC 4 cut(s) 36, 63, 682, 854
DpnII GATC 4 cut(s) 34, 61, 680, 852
DriI GACNNNNNGTC 1 cut(s) 832
EaeI YGGCCR 1 cut(s) 108
Eam1104I CTCTTC 3 cut(s) 339, 942, 1043
Eam1105I GACNNNNNGTC 1 cut(s) 832
EarI CTCTTC 3 cut(s) 339, 942, 1043
EciI GGCGGA 1 cut(s) 735
Eco147I AGGCCT 2 cut(s) 72, 1087
Eco24I GRGCYC 1 cut(s) 451
Eco32I GATATC 2 cut(s) 127, 429
Eco57I CTGAAG 2 cut(s) 333, 381
Eco81I CCTNAGG 2 cut(s) 495, 759
Eco88I CYCGRG 2 cut(s) 131, 596
EcoRV GATATC 2 cut(s) 127, 429
EcoT38I GRGCYC 1 cut(s) 451
FaeI CATG 5 cut(s) 31, 197, 574, 866, 876
FalI AAGNNNNNCTT 2 cut(s) 435, 467
FaqI GGGAC 2 cut(s) 625, 740
FatI CATG 5 cut(s) 27, 193, 570, 862, 872
FauI CCCGC 1 cut(s) 153
FblI GTMKAC 3 cut(s) 272, 836, 878
Fnu4HI GCNGC 3 cut(s) 7, 116, 231
FokI GGATG 2 cut(s) 797, 983
FriOI GRGCYC 1 cut(s) 451
Fsp4HI GCNGC 3 cut(s) 7, 116, 231
FspBI CTAG 3 cut(s) 416, 705, 1038
GluI GCNGC 3 cut(s) 7, 116, 231
GsuI CTGGAG 3 cut(s) 530, 903, 1074
HaeIII GGCC 4 cut(s) 72, 110, 890, 1087
HapII CCGG 2 cut(s) 111, 1068
Hin1II CATG 5 cut(s) 31, 197, 574, 866, 876
HinfI GANTC 3 cut(s) 181, 318, 356
HpaII CCGG 2 cut(s) 111, 1068
HphI GGTGA 1 cut(s) 1091
Hpy166II GTNNAC 3 cut(s) 273, 837, 879
Hpy188I TCNGA 7 cut(s) 34, 124, 155, 186, 252, 361, 433
Hpy188III TCNNGA 8 cut(s) 88, 133, 236, 553, 596, 598, 845, 1091
Hpy8I GTNNAC 3 cut(s) 273, 837, 879
Hpy99I CGWCG 2 cut(s) 59, 770
HpyAV CCTTC 5 cut(s) 308, 437, 642, 670, 1004
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 3 cut(s) 149, 1055, 1098
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 9 cut(s) 43, 173, 420, 432, 461, 495, 672, 693, 759
HpySE526I ACGT 1 cut(s) 57
Hsp92II CATG 5 cut(s) 31, 197, 574, 866, 876
Kzo9I GATC 4 cut(s) 34, 61, 680, 852
LmnI GCTCC 2 cut(s) 660, 1072
Lsp1109I GCAGC 3 cut(s) 18, 127, 242
MaeI CTAG 3 cut(s) 416, 705, 1038
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 2 cut(s) 319, 334
MalI GATC 4 cut(s) 36, 63, 682, 854
MboI GATC 4 cut(s) 34, 61, 680, 852
MhlI GDGCHC 2 cut(s) 451, 1063
MluCI AATT 3 cut(s) 254, 295, 715
MlyI GAGTC 1 cut(s) 327
MroXI GAANNNNTTC 1 cut(s) 591
MseI TTAA 3 cut(s) 453, 540, 660
MslI CAYNNNNRTG 1 cut(s) 26
MspCI CTTAAG 1 cut(s) 659
MspI CCGG 2 cut(s) 111, 1068
MspR9I CCNGG 2 cut(s) 112, 1069
Mva1269I GAATGC 2 cut(s) 694, 1100
MwoI GCNNNNNNNGC 1 cut(s) 239
NciI CCSGG 2 cut(s) 112, 1069
NdeII GATC 4 cut(s) 34, 61, 680, 852
NheI GCTAGC 2 cut(s) 415, 1037
NlaIII CATG 5 cut(s) 31, 197, 574, 866, 876
NmeAIII GCCGAG 1 cut(s) 817
NmuCI GTSAC 1 cut(s) 319
NspI RCATGY 1 cut(s) 31
PaeR7I CTCGAG 2 cut(s) 131, 596
PceI AGGCCT 2 cut(s) 72, 1087
PciI ACATGT 1 cut(s) 27
PctI GAATGC 2 cut(s) 694, 1100
PdmI GAANNNNTTC 1 cut(s) 591
PfeI GAWTC 2 cut(s) 181, 356
PkrI GCNGC 3 cut(s) 8, 117, 232
PleI GAGTC 1 cut(s) 326
PpsI GAGTC 1 cut(s) 326
PscI ACATGT 1 cut(s) 27
PstI CTGCAG 1 cut(s) 151
RseI CAYNNNNRTG 1 cut(s) 26
SaqAI TTAA 3 cut(s) 453, 540, 660
SatI GCNGC 3 cut(s) 7, 116, 231
Sau3AI GATC 4 cut(s) 34, 61, 680, 852
SchI GAGTC 1 cut(s) 327
ScrFI CCNGG 2 cut(s) 112, 1069
SduI GDGCHC 2 cut(s) 451, 1063
SetI ASST 8 cut(s) 49, 60, 140, 235, 268, 313, 421, 657
SfcI CTRYAG 1 cut(s) 147
Sfr274I CTCGAG 2 cut(s) 131, 596
SlaI CTCGAG 2 cut(s) 131, 596
SmiMI CAYNNNNRTG 1 cut(s) 26
SmlI CTYRAG 6 cut(s) 86, 131, 203, 596, 659, 750
SmoI CTYRAG 6 cut(s) 86, 131, 203, 596, 659, 750
Sse9I AATT 3 cut(s) 254, 295, 715
SseBI AGGCCT 2 cut(s) 72, 1087
SsiI CCGC 2 cut(s) 160, 746
SspMI CTAG 3 cut(s) 416, 705, 1038
StuI AGGCCT 2 cut(s) 72, 1087
StyD4I CCNGG 2 cut(s) 110, 1067
TaiI ACGT 1 cut(s) 60
TaqI TCGA 7 cut(s) 64, 132, 165, 219, 597, 683, 844
TasI AATT 3 cut(s) 254, 295, 715
TfiI GAWTC 2 cut(s) 181, 356
Tru1I TTAA 3 cut(s) 453, 540, 660
Tru9I TTAA 3 cut(s) 453, 540, 660
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 3 cut(s) 6, 115, 230
Tsp45I GTSAC 1 cut(s) 319
TspGWI ACGGA 1 cut(s) 629
Vha464I CTTAAG 1 cut(s) 659
XceI RCATGY 1 cut(s) 31
XhoI CTCGAG 2 cut(s) 131, 596
XmiI GTMKAC 3 cut(s) 272, 836, 878
XmnI GAANNNNTTC 1 cut(s) 591
XspI CTAG 3 cut(s) 416, 705, 1038
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.