Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Reverse (-)

60531393 .. 60534339

Gene Structure 2947 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020045

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGTCCGACCTCGGCGCCTCCCTTCCGGCCGCCGCCGCCGCTCTTAGTGCGGAGGATCGCGCTGGTCTTGTAAATGCTCTCAAGTTATGCTTTGACATTTTGTCATCATTTAGTATGCTCTATGATAGATACGAAATTGTCAACGGTGTCACTGAAGTTGAAGGAGTGAAAAATGAATCCGCATACCTCAAGGATATCAAGTGGTATAGGATAGATGAACCGAAAGGATTCAAGCTTGAGTTTTTCTTCAATGCCAATCCTTATTTCAAAAATTCTGTCCTGACAAAAACGTATCACATGATTGATGATGATGAACCTATTTTGGAGAAGGCAATTGGGACGGAGATTGAATGGTATCCTGGGAAAAGCTTGACGCAGAAGATCTTGAAGAAGAAGCCAAGAAAGGGATCAAAAAATTCTAAACCCATAACCAAAACTGAAGATTGTGAAAGCTTCTTTAACTTCTTCAACCCTCCTGAGATCCCTGATACTGATGATGGATTTGATGAGGAAACTGCTGAAGAACTTCAAGGTCAGATGGAGCAGGATTATGACATTGGTTCAACAATAAGAGACAAAATCATTCCCCATGCGGTGTCATGGTTTACTGGGGAGGCTGTTAAGGATGAATTTGAAGATATAGAAGATGATGATGATGATGATGATGATGTAGATGAGAATGAAGACGAAGACGAAGACGAGGAGGAAGATGAAGATGAAGATGAAGAGGACGATGACGATGATGAGGAAGAGGAAGAGAAGGGAAGGAAAAAGCCATCTGCTGCAGCTAAGAAAAGTGGGAAGGCACAAGGAGCAGAAGGTGGCGAGCGTCCTCCAGAGTGCAAGCAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

285

Amino Acids

32.21

Weight (kDa)

4.16

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	62 - 205	5.1e-52	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	14
AccBSI	CCGCTC	1 cut(s)	41
AccII	CGCG	1 cut(s)	60
AciI	CCGC	7 cut(s)	30, 33, 36, 39, 50, 180, 593
AclWI	GGATC	3 cut(s)	63, 415, 475
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	3 cut(s)	271, 415, 629
AcuI	CTGAAG	3 cut(s)	174, 459, 540
AcyI	GRCGYC	1 cut(s)	15
AfiI	CCNNNNNNNGG	1 cut(s)	404
AhdI	GACNNNNNGTC	1 cut(s)	100
AjnI	CCWGG	1 cut(s)	358
AjuI	GAANNNNNNNTTGG	2 cut(s)	248, 280
AluBI	AGCT	4 cut(s)	235, 369, 453, 788
AluI	AGCT	4 cut(s)	235, 369, 453, 788
Alw26I	GTCTC	1 cut(s)	567
AlwI	GGATC	3 cut(s)	63, 415, 475
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	3 cut(s)	782, 785, 847
ApoI	RAATTY	3 cut(s)	271, 415, 629
ArsI	GACNNNNNNTTYG	2 cut(s)	261, 293
Asp700I	GAANNNNTTC	2 cut(s)	227, 525
AspLEI	GCGC	2 cut(s)	17, 62
BanI	GGYRCC	1 cut(s)	14
BbsI	GAAGAC	3 cut(s)	690, 696, 702
BbvI	GCAGC	2 cut(s)	769, 797
BccI	CCATC	3 cut(s)	491, 532, 784
BciT130I	CCWGG	1 cut(s)	360
BciVI	GTATCC	1 cut(s)	366
BcoDI	GTCTC	1 cut(s)	567
BfmI	CTRYAG	1 cut(s)	783
BfoI	RGCGCY	1 cut(s)	18
BfuI	GTATCC	1 cut(s)	366
BglII	AGATCT	1 cut(s)	381
BisI	GCNGC	7 cut(s)	30, 33, 36, 39, 783, 786, 848
BlsI	GCNGC	7 cut(s)	31, 34, 37, 40, 784, 787, 849
Bme1390I	CCNGG	1 cut(s)	360
BmeRI	GACNNNNNGTC	1 cut(s)	100
BmiI	GGNNCC	1 cut(s)	16
BmrFI	CCNGG	1 cut(s)	360
BmrI	ACTGGG	1 cut(s)	618
BmuI	ACTGGG	1 cut(s)	618
BpiI	GAAGAC	3 cut(s)	690, 696, 702
BpmI	CTGGAG	1 cut(s)	819
BpuEI	CTTGAG	3 cut(s)	65, 173, 257
BsaHI	GRCGYC	1 cut(s)	15
BsaJI	CCNNGG	2 cut(s)	10, 359
Bsc4I	CCNNNNNNNGG	1 cut(s)	404
Bse1I	ACTGG	1 cut(s)	613
BseBI	CCWGG	1 cut(s)	360
BseDI	CCNNGG	2 cut(s)	10, 359
BseGI	GGATG	1 cut(s)	631
BseLI	CCNNNNNNNGG	1 cut(s)	404
BseMII	CTCAG	1 cut(s)	468
BseNI	ACTGG	1 cut(s)	613
BseRI	GAGGAG	1 cut(s)	716
BseX3I	CGGCCG	1 cut(s)	27
BseXI	GCAGC	2 cut(s)	769, 797
Bsh1236I	CGCG	1 cut(s)	60
Bsh1285I	CGRYCG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	29
BshNI	GGYRCC	1 cut(s)	14
BsiEI	CGRYCG	1 cut(s)	30
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	1 cut(s)	352
BslI	CCNNNNNNNGG	1 cut(s)	404
BsmAI	GTCTC	1 cut(s)	567
BsmFI	GGGAC	1 cut(s)	352
BsnI	GGCC	1 cut(s)	29
Bsp143I	GATC	4 cut(s)	55, 381, 407, 480
BspACI	CCGC	7 cut(s)	30, 33, 36, 39, 50, 180, 593
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	469
BspFNI	CGCG	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	16
BspMAI	CTGCAG	1 cut(s)	787
BspPI	GGATC	3 cut(s)	63, 415, 475
BspT107I	GGYRCC	1 cut(s)	14
BsrBI	CCGCTC	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	613
BssECI	CCNNGG	2 cut(s)	10, 359
BssMI	GATC	4 cut(s)	55, 381, 407, 480
BssNI	GRCGYC	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	360
Bst4CI	ACNGT	1 cut(s)	146
Bst6I	CTCTTC	3 cut(s)	720, 744, 750
BstACI	GRCGYC	1 cut(s)	15
BstC8I	GCNNGC	2 cut(s)	827, 845
BstDEI	CTNAG	3 cut(s)	44, 477, 789
BstF5I	GGATG	1 cut(s)	631
BstFNI	CGCG	1 cut(s)	60
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	2 cut(s)	17, 62
BstKTI	GATC	4 cut(s)	58, 384, 410, 483
BstMAI	GTCTC	1 cut(s)	567
BstMBI	GATC	4 cut(s)	55, 381, 407, 480
BstMCI	CGRYCG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 38, 47, 812
BstNI	CCWGG	1 cut(s)	360
BstSCI	CCNGG	1 cut(s)	358
BstSFI	CTRYAG	1 cut(s)	783
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	2 cut(s)	769, 797
BstV2I	GAAGAC	3 cut(s)	690, 696, 702
BstX2I	RGATCY	2 cut(s)	381, 480
BstYI	RGATCY	2 cut(s)	381, 480
BstZI	CGGCCG	1 cut(s)	27
BsuI	GTATCC	1 cut(s)	366
BsuRI	GGCC	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	631
BtsIMutI	CAGTG	1 cut(s)	150
Cac8I	GCNNGC	2 cut(s)	827, 845
CfoI	GCGC	2 cut(s)	17, 62
CseI	GACGC	2 cut(s)	382, 818
CviAII	CATG	3 cut(s)	298, 590, 600
CviJI	RGCY	8 cut(s)	29, 235, 369, 397, 453, 617, 775, 788
CviKI_1	RGCY	8 cut(s)	29, 235, 369, 397, 453, 617, 775, 788
DdeI	CTNAG	3 cut(s)	44, 477, 789
DinI	GGCGCC	1 cut(s)	16
DpnI	GATC	4 cut(s)	57, 383, 409, 482
DpnII	GATC	4 cut(s)	55, 381, 407, 480
DriI	GACNNNNNGTC	1 cut(s)	100
EaeI	YGGCCR	1 cut(s)	27
EagI	CGGCCG	1 cut(s)	27
Eam1104I	CTCTTC	3 cut(s)	720, 744, 750
Eam1105I	GACNNNNNGTC	1 cut(s)	100
EarI	CTCTTC	3 cut(s)	720, 744, 750
EclXI	CGGCCG	1 cut(s)	27
Eco32I	GATATC	1 cut(s)	196
Eco52I	CGGCCG	1 cut(s)	27
Eco57I	CTGAAG	3 cut(s)	174, 459, 540
EcoRII	CCWGG	1 cut(s)	358
EcoRV	GATATC	1 cut(s)	196
EgeI	GGCGCC	1 cut(s)	16
EheI	GGCGCC	1 cut(s)	16
FaeI	CATG	3 cut(s)	301, 593, 603
FalI	AAGNNNNNCTT	2 cut(s)	74, 106
FaqI	GGGAC	1 cut(s)	352
FatI	CATG	3 cut(s)	297, 589, 599
Fnu4HI	GCNGC	7 cut(s)	30, 33, 36, 39, 783, 786, 848
FokI	GGATG	1 cut(s)	638
Fsp4HI	GCNGC	7 cut(s)	30, 33, 36, 39, 783, 786, 848
GlaI	GCGC	2 cut(s)	16, 61
GluI	GCNGC	7 cut(s)	30, 33, 36, 39, 783, 786, 848
GsuI	CTGGAG	1 cut(s)	819
HaeII	RGCGCY	1 cut(s)	18
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	1 cut(s)	26
HgaI	GACGC	2 cut(s)	382, 818
HhaI	GCGC	2 cut(s)	17, 62
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	3 cut(s)	301, 593, 603
Hin6I	GCGC	2 cut(s)	15, 60
HinP1I	GCGC	2 cut(s)	15, 60
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HindIII	AAGCTT	3 cut(s)	233, 367, 451
HinfI	GANTC	2 cut(s)	176, 228
HpaII	CCGG	1 cut(s)	26
Hpy166II	GTNNAC	2 cut(s)	142, 606
Hpy188I	TCNGA	2 cut(s)	7, 537
Hpy188III	TCNNGA	4 cut(s)	280, 385, 476, 836
Hpy8I	GTNNAC	2 cut(s)	142, 606
HpyAV	CCTTC	7 cut(s)	32, 155, 322, 754, 759, 796, 812
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4IV	ACGT	1 cut(s)	290
HpyCH4V	TGCA	2 cut(s)	785, 843
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 38, 47, 812
HpyF3I	CTNAG	3 cut(s)	44, 477, 789
HpySE526I	ACGT	1 cut(s)	290
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	3 cut(s)	301, 593, 603
HspAI	GCGC	2 cut(s)	15, 60
KasI	GGCGCC	1 cut(s)	14
Kzo9I	GATC	4 cut(s)	55, 381, 407, 480
LmnI	GCTCC	2 cut(s)	541, 812
Lsp1109I	GCAGC	2 cut(s)	769, 797
MaeII	ACGT	1 cut(s)	290
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	4 cut(s)	57, 383, 409, 482
MbiI	CCGCTC	1 cut(s)	41
MboI	GATC	4 cut(s)	55, 381, 407, 480
MfeI	CAATTG	1 cut(s)	333
MflI	RGATCY	2 cut(s)	381, 480
MluCI	AATT	5 cut(s)	135, 271, 333, 415, 629
Mly113I	GGCGCC	1 cut(s)	15
MmeI	TCCRAC	1 cut(s)	30
MroXI	GAANNNNTTC	2 cut(s)	227, 525
MseI	TTAA	2 cut(s)	459, 621
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	360
MunI	CAATTG	1 cut(s)	333
MvaI	CCWGG	1 cut(s)	360
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	4 cut(s)	35, 38, 47, 812
NarI	GGCGCC	1 cut(s)	15
NdeII	GATC	4 cut(s)	55, 381, 407, 480
NlaIII	CATG	3 cut(s)	301, 593, 603
NlaIV	GGNNCC	1 cut(s)	16
NmuCI	GTSAC	1 cut(s)	148
PdmI	GAANNNNTTC	2 cut(s)	227, 525
PfeI	GAWTC	2 cut(s)	176, 228
PkrI	GCNGC	7 cut(s)	31, 34, 37, 40, 784, 787, 849
PluTI	GGCGCC	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	358
PspN4I	GGNNCC	1 cut(s)	16
PstI	CTGCAG	1 cut(s)	787
PsuI	RGATCY	2 cut(s)	381, 480
SaqAI	TTAA	2 cut(s)	459, 621
SatI	GCNGC	7 cut(s)	30, 33, 36, 39, 783, 786, 848
Sau3AI	GATC	4 cut(s)	55, 381, 407, 480
ScrFI	CCNGG	1 cut(s)	360
SfcI	CTRYAG	1 cut(s)	783
SfoI	GGCGCC	1 cut(s)	16
SmlI	CTYRAG	3 cut(s)	80, 188, 236
SmoI	CTYRAG	3 cut(s)	80, 188, 236
Sse9I	AATT	5 cut(s)	135, 271, 333, 415, 629
SsiI	CCGC	7 cut(s)	30, 33, 36, 39, 50, 180, 593
SspDI	GGCGCC	1 cut(s)	14
StyD4I	CCNGG	1 cut(s)	358
TaaI	ACNGT	1 cut(s)	146
TaiI	ACGT	1 cut(s)	293
TasI	AATT	5 cut(s)	135, 271, 333, 415, 629
TauI	GCSGC	4 cut(s)	32, 35, 38, 41
TfiI	GAWTC	2 cut(s)	176, 228
Tru1I	TTAA	2 cut(s)	459, 621
Tru9I	TTAA	2 cut(s)	459, 621
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	3 cut(s)	782, 785, 847
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	8 cut(s)	189, 231, 327, 642, 696, 726, 732, 738
TspGWI	ACGGA	1 cut(s)	356
TspRI	CASTG	1 cut(s)	157
XapI	RAATTY	3 cut(s)	271, 415, 629
XmnI	GAANNNNTTC	2 cut(s)	227, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.