Rh5DG449900

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000381
Physical Location & Seq
Forward (+)
71751330 .. 71753396
2067 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG449900.1

Sequence Viewer

Length: 909 bp
ATGTTGCATTTTACTTCAAATTTCTGGCATTGCTTTGTCTTCTGCTTTTTTCCTCTTACCTCCCCGCTTTCTATAAATGGGAACTTACGAACCAGGATGAGCAAAGACTTAAATAACATCAATTTAGCTGGCCAGCACACCATGGACATCCTTGAGAGCCTACCTCATAATGTCAGAAAGCGGCTTGAGTTCATGAGAGAAATTGAGAGTCAACGTGATGAATTAGAGGCCAAGTTTTTCAAGGAGAAAGCTGAACTTGAAGCCAAGTATCAGAAATTATATCAGACTCTCTACAGCAGGCGATACTTGATTGTGAATGGTGTTGTTGAAACTGAAGGAGTTGCCCCTGGAACAACAACAGATCATGAGAACAAAACTGCAAACGAGAGAGGAGTGCCTGATTTCTGGCTTAATGCATTGAAGAACAATGCCGTGCTAGCCAAGGAGATTGCCGAGTGTGATGGAGGAGCTCTTAAATATCTTAGGGATATCAAGTGTTTTAAGATACATAATTCGAAGGGGTTCAAGCTTGAGTTCGACTTTGACACCAATCCATTTTTCAAAAACTCTGTTTTGACAAAGACATATCACATGATTGATGAAGATGAACCAAACAGCACAGCAGGGACGGAGATTGAATGGTATCCAGCAAAATGCCTGACACAGAAGATTGTTAAGAAGAAGCATAAGAAGGGATCAAAGAATTCTAAGCTTCTGACTAAAACTAATTGTAAAAGTTTCTTCAATTTCTTTAGCCCACATCAAGTCTCCAAGGACGATGAAGTTACTGATGAAGCTGCTGCCGAGGAACTCAAAAACCAGAAGAAACAAGACTATGATGTTGGGTCAACCATTTGTTATAAGATCATCCCACATGCAGTTTCGTGGTATACTGGAGAAGCTTTTTAG

Protein Analysis

302

Amino Acids

34.91

Weight (kDa)

8.05

Isoelectric Point (pI)

31.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 60 - 300 1.1e-72 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000381)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 861
AccI GTMKAC 1 cut(s) 890
AciI CCGC 2 cut(s) 65, 181
AclWI GGATC 1 cut(s) 703
AcoI YGGCCR 1 cut(s) 130
AcsI RAATTY 2 cut(s) 19, 703
AcuI CTGAAG 1 cut(s) 354
AgsI TTSAA 9 cut(s) 18, 241, 260, 329, 421, 526, 562, 638, 745
AjnI CCWGG 2 cut(s) 92, 346
AjuI GAANNNNNNNTTGG 2 cut(s) 542, 574
AluBI AGCT 7 cut(s) 128, 251, 470, 529, 712, 797, 902
AluI AGCT 7 cut(s) 128, 251, 470, 529, 712, 797, 902
Alw21I GWGCWC 1 cut(s) 472
Alw26I GTCTC 1 cut(s) 772
AlwI GGATC 1 cut(s) 703
AoxI GGCC 2 cut(s) 130, 228
ApeKI GCWGC 2 cut(s) 797, 800
ApoI RAATTY 2 cut(s) 19, 703
Asp700I GAANNNNTTC 1 cut(s) 521
AsuII TTCGAA 1 cut(s) 515
AsuNHI GCTAGC 1 cut(s) 436
BalI TGGCCA 1 cut(s) 132
BanII GRGCYC 1 cut(s) 472
BbsI GAAGAC 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 472
BbvI GCAGC 2 cut(s) 784, 787
BccI CCATC 1 cut(s) 455
BceAI ACGGC 1 cut(s) 416
BciT130I CCWGG 2 cut(s) 94, 348
BciVI GTATCC 1 cut(s) 654
BcoDI GTCTC 1 cut(s) 772
BfaI CTAG 1 cut(s) 437
BfmI CTRYAG 1 cut(s) 292
BfuI GTATCC 1 cut(s) 654
BisI GCNGC 3 cut(s) 182, 798, 801
BlsI GCNGC 3 cut(s) 183, 799, 802
Bme1390I CCNGG 2 cut(s) 94, 348
BmrFI CCNGG 2 cut(s) 94, 348
BmtI GCTAGC 1 cut(s) 440
BpiI GAAGAC 1 cut(s) 31
BplI GAGNNNNNCTC 2 cut(s) 148, 180
Bpu14I TTCGAA 1 cut(s) 515
BpuEI CTTGAG 3 cut(s) 173, 206, 551
BsaJI CCNNGG 5 cut(s) 141, 346, 441, 771, 804
Bse1I ACTGG 1 cut(s) 898
Bse3DI GCAATG 1 cut(s) 28
BseBI CCWGG 2 cut(s) 94, 348
BseDI CCNNGG 5 cut(s) 141, 346, 441, 771, 804
BseGI GGATG 3 cut(s) 102, 147, 867
BseMI GCAATG 1 cut(s) 28
BseNI ACTGG 1 cut(s) 898
BseRI GAGGAG 2 cut(s) 405, 480
BseXI GCAGC 2 cut(s) 784, 787
BshFI GGCC 2 cut(s) 132, 230
BsiHKAI GWGCWC 1 cut(s) 472
BslFI GGGAC 1 cut(s) 640
BsmAI GTCTC 1 cut(s) 772
BsmFI GGGAC 1 cut(s) 640
BsnI GGCC 2 cut(s) 132, 230
Bsp119I TTCGAA 1 cut(s) 515
Bsp1286I GDGCHC 1 cut(s) 472
Bsp143I GATC 3 cut(s) 361, 695, 864
Bsp19I CCATGG 1 cut(s) 141
BspACI CCGC 2 cut(s) 65, 181
BspANI GGCC 2 cut(s) 132, 230
BspHI TCATGA 2 cut(s) 192, 364
BspOI GCTAGC 1 cut(s) 440
BspPI GGATC 1 cut(s) 703
BspT104I TTCGAA 1 cut(s) 515
BsrDI GCAATG 1 cut(s) 28
BsrI ACTGG 1 cut(s) 898
BssECI CCNNGG 5 cut(s) 141, 346, 441, 771, 804
BssMI GATC 3 cut(s) 361, 695, 864
BssNAI GTATAC 1 cut(s) 891
BssT1I CCWWGG 3 cut(s) 141, 441, 771
Bst1107I GTATAC 1 cut(s) 891
Bst2UI CCWGG 2 cut(s) 94, 348
BstBI TTCGAA 1 cut(s) 515
BstC8I GCNNGC 4 cut(s) 130, 134, 299, 438
BstDEI CTNAG 2 cut(s) 482, 708
BstDSI CCRYGG 1 cut(s) 141
BstF5I GGATG 3 cut(s) 102, 147, 867
BstKTI GATC 3 cut(s) 364, 698, 867
BstMAI GTCTC 1 cut(s) 772
BstMBI GATC 3 cut(s) 361, 695, 864
BstMWI GCNNNNNNNGC 1 cut(s) 437
BstNI CCWGG 2 cut(s) 94, 348
BstNSI RCATGY 1 cut(s) 878
BstSCI CCNGG 2 cut(s) 92, 346
BstSFI CTRYAG 1 cut(s) 292
BstV1I GCAGC 2 cut(s) 784, 787
BstV2I GAAGAC 1 cut(s) 31
BstZ17I GTATAC 1 cut(s) 891
BsuI GTATCC 1 cut(s) 654
BsuRI GGCC 2 cut(s) 132, 230
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 3 cut(s) 102, 147, 867
Cac8I GCNNGC 4 cut(s) 130, 134, 299, 438
CciI TCATGA 2 cut(s) 192, 364
CviAII CATG 5 cut(s) 142, 193, 365, 592, 875
DdeI CTNAG 2 cut(s) 482, 708
DpnI GATC 3 cut(s) 363, 697, 866
DpnII GATC 3 cut(s) 361, 695, 864
EaeI YGGCCR 1 cut(s) 130
Ecl136II GAGCTC 1 cut(s) 470
Eco130I CCWWGG 3 cut(s) 141, 441, 771
Eco24I GRGCYC 1 cut(s) 472
Eco32I GATATC 1 cut(s) 490
Eco53kI GAGCTC 1 cut(s) 470
Eco57I CTGAAG 1 cut(s) 354
EcoICRI GAGCTC 1 cut(s) 470
EcoRI GAATTC 1 cut(s) 703
EcoRII CCWGG 2 cut(s) 92, 346
EcoRV GATATC 1 cut(s) 490
EcoT14I CCWWGG 3 cut(s) 141, 441, 771
EcoT22I ATGCAT 1 cut(s) 418
EcoT38I GRGCYC 1 cut(s) 472
ErhI CCWWGG 3 cut(s) 141, 441, 771
FaeI CATG 5 cut(s) 145, 196, 368, 595, 878
FalI AAGNNNNNCTT 2 cut(s) 240, 272
FaqI GGGAC 1 cut(s) 640
FatI CATG 5 cut(s) 141, 192, 364, 591, 874
FauI CCCGC 1 cut(s) 72
FblI GTMKAC 1 cut(s) 890
Fnu4HI GCNGC 3 cut(s) 182, 798, 801
FokI GGATG 3 cut(s) 109, 134, 854
FriOI GRGCYC 1 cut(s) 472
Fsp4HI GCNGC 3 cut(s) 182, 798, 801
FspBI CTAG 1 cut(s) 437
GluI GCNGC 3 cut(s) 182, 798, 801
HaeIII GGCC 2 cut(s) 132, 230
Hin1II CATG 5 cut(s) 145, 196, 368, 595, 878
HincII GTYRAC 2 cut(s) 212, 849
HindII GTYRAC 2 cut(s) 212, 849
HindIII AAGCTT 3 cut(s) 527, 710, 900
HinfI GANTC 2 cut(s) 208, 286
Hpy166II GTNNAC 3 cut(s) 212, 849, 891
Hpy188I TCNGA 4 cut(s) 176, 273, 285, 717
Hpy188III TCNNGA 2 cut(s) 193, 365
Hpy8I GTNNAC 3 cut(s) 212, 849, 891
HpyAV CCTTC 3 cut(s) 329, 511, 685
HpyCH4IV ACGT 1 cut(s) 214
HpyCH4V TGCA 4 cut(s) 7, 380, 416, 878
HpyF10VI GCNNNNNNNGC 1 cut(s) 437
HpyF3I CTNAG 2 cut(s) 482, 708
HpySE526I ACGT 1 cut(s) 214
Hsp92II CATG 5 cut(s) 145, 196, 368, 595, 878
Kzo9I GATC 3 cut(s) 361, 695, 864
LmnI GCTCC 1 cut(s) 467
Lsp1109I GCAGC 2 cut(s) 784, 787
MaeI CTAG 1 cut(s) 437
MaeII ACGT 1 cut(s) 214
MaeIII GTNAC 1 cut(s) 784
MalI GATC 3 cut(s) 363, 697, 866
MboI GATC 3 cut(s) 361, 695, 864
MboII GAAGA 7 cut(s) 31, 433, 614, 679, 691, 733, 835
MhlI GDGCHC 1 cut(s) 472
MlsI TGGCCA 1 cut(s) 132
MluCI AATT 9 cut(s) 19, 121, 201, 221, 275, 511, 703, 727, 745
MluNI TGGCCA 1 cut(s) 132
MlyI GAGTC 2 cut(s) 217, 280
MnlI CCTC 7 cut(s) 63, 70, 174, 220, 383, 458, 799
Mox20I TGGCCA 1 cut(s) 132
Mph1103I ATGCAT 1 cut(s) 418
MroXI GAANNNNTTC 1 cut(s) 521
MscI TGGCCA 1 cut(s) 132
MseI TTAA 5 cut(s) 110, 411, 474, 501, 675
Msp20I TGGCCA 1 cut(s) 132
MspR9I CCNGG 2 cut(s) 94, 348
MvaI CCWGG 2 cut(s) 94, 348
MwoI GCNNNNNNNGC 1 cut(s) 437
NcoI CCATGG 1 cut(s) 141
NdeII GATC 3 cut(s) 361, 695, 864
NheI GCTAGC 1 cut(s) 436
NlaIII CATG 5 cut(s) 145, 196, 368, 595, 878
NmeAIII GCCGAG 2 cut(s) 478, 829
NsiI ATGCAT 1 cut(s) 418
NspI RCATGY 1 cut(s) 878
NspV TTCGAA 1 cut(s) 515
PagI TCATGA 2 cut(s) 192, 364
PdmI GAANNNNTTC 1 cut(s) 521
PkrI GCNGC 3 cut(s) 183, 799, 802
PleI GAGTC 2 cut(s) 216, 280
PpsI GAGTC 2 cut(s) 216, 280
PsiI TTATAA 1 cut(s) 861
Psp124BI GAGCTC 1 cut(s) 472
Psp6I CCWGG 2 cut(s) 92, 346
PspGI CCWGG 2 cut(s) 92, 346
SacI GAGCTC 1 cut(s) 472
SaqAI TTAA 5 cut(s) 110, 411, 474, 501, 675
SatI GCNGC 3 cut(s) 182, 798, 801
Sau3AI GATC 3 cut(s) 361, 695, 864
SchI GAGTC 2 cut(s) 217, 280
ScrFI CCNGG 2 cut(s) 94, 348
SduI GDGCHC 1 cut(s) 472
SfcI CTRYAG 1 cut(s) 292
SfuI TTCGAA 1 cut(s) 515
SmlI CTYRAG 3 cut(s) 152, 185, 530
SmoI CTYRAG 3 cut(s) 152, 185, 530
Sse9I AATT 9 cut(s) 19, 121, 201, 221, 275, 511, 703, 727, 745
SsiI CCGC 2 cut(s) 65, 181
SspMI CTAG 1 cut(s) 437
SstI GAGCTC 1 cut(s) 472
StyD4I CCNGG 2 cut(s) 92, 346
StyI CCWWGG 3 cut(s) 141, 441, 771
TaiI ACGT 1 cut(s) 217
TaqI TCGA 2 cut(s) 515, 537
TasI AATT 9 cut(s) 19, 121, 201, 221, 275, 511, 703, 727, 745
TauI GCSGC 1 cut(s) 184
Tru1I TTAA 5 cut(s) 110, 411, 474, 501, 675
Tru9I TTAA 5 cut(s) 110, 411, 474, 501, 675
TseI GCWGC 2 cut(s) 797, 800
TspDTI ATGAA 6 cut(s) 181, 234, 615, 621, 795, 807
TspGWI ACGGA 1 cut(s) 644
XapI RAATTY 2 cut(s) 19, 703
XceI RCATGY 1 cut(s) 878
XmiI GTMKAC 1 cut(s) 890
XmnI GAANNNNTTC 1 cut(s) 521
XspI CTAG 1 cut(s) 437
Zsp2I ATGCAT 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.