Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Reverse (-)

84357597 .. 84358577

Gene Structure 981 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG611000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGAAAAACAATGAAGTCCTTGCTGAGGAGATTACTGAGTGCGATGAAGGTGCTTTGAAGTACCTACAAGACATCCAATGGAGGAGGTTAGTGACACGTTGGAGAGGGGGTTTCGAGCTGGAGTTCATATTTGCTCATAATCCATATTTTGAAGATTCTTCCCTGATAAAACAATTTCGGCATGAGCAAACATTTTCGTCAGAGATCAATTGGCGCCATGATCAAAGCTTGACACATAAGCTTATAGAGAAGCCAGGAAAGAAAGGAAAACACATTGTCAAAACTTGTCAAAGCTTTTTTAACTTCTTCAGCCGTCGTCCGGATCCTCAAGCCACTGAGGAGAATACTTATAGTGAAGATATTGTTCAGGGATTTAGAGCCCAGATCAAATATGATTTTTACATTGGTAAAATAATCCGAGACAAAATTATTCCTCATGGAATAGCATGGTTCACAAAGGAGGCGCTTGAAAATAATAGTGAGTTTCATGATTTAGAAGACTTCTACAATGACGGTTATTCGGATGAGTCTGAGTCCGAGGACGAGGAGGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGATGATTGTGGAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

198

Amino Acids

23.6

Weight (kDa)

4.55

Isoelectric Point (pI)

75.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	1 - 154	2.1e-34	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	213
AccIII	TCCGGA	1 cut(s)	319
AclWI	GGATC	2 cut(s)	317, 330
AcuI	CTGAAG	1 cut(s)	292
AcyI	GRCGYC	1 cut(s)	214
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	2 cut(s)	25, 319
AflIII	ACRYGT	1 cut(s)	95
AgsI	TTSAA	3 cut(s)	58, 152, 470
AjnI	CCWGG	1 cut(s)	253
AluBI	AGCT	4 cut(s)	118, 228, 241, 294
AluI	AGCT	4 cut(s)	118, 228, 241, 294
Alw26I	GTCTC	1 cut(s)	414
AlwI	GGATC	2 cut(s)	317, 330
Aor13HI	TCCGGA	1 cut(s)	319
AspLEI	GCGC	2 cut(s)	216, 466
BamHI	GGATCC	1 cut(s)	322
BanI	GGYRCC	1 cut(s)	213
BanII	GRGCYC	1 cut(s)	382
BbsI	GAAGAC	1 cut(s)	504
BbvCI	CCTCAGC	1 cut(s)	24
BceAI	ACGGC	1 cut(s)	297
BcgI	CGANNNNNNTGC	2 cut(s)	32, 66
BciT130I	CCWGG	1 cut(s)	255
BclI	TGATCA	1 cut(s)	220
BcoDI	GTCTC	1 cut(s)	414
BfoI	RGCGCY	2 cut(s)	217, 467
Bme1390I	CCNGG	1 cut(s)	255
BmiI	GGNNCC	2 cut(s)	215, 324
BmrFI	CCNGG	1 cut(s)	255
BpiI	GAAGAC	1 cut(s)	504
BpmI	CTGGAG	1 cut(s)	140
Bpu10I	CCTNAGC	1 cut(s)	24
BpuEI	CTTGAG	1 cut(s)	312
BsaHI	GRCGYC	1 cut(s)	214
BsaJI	CCNNGG	1 cut(s)	537
BsaWI	WCCGGW	1 cut(s)	319
BsaXI	ACNNNNNCTCC	2 cut(s)	94, 124
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 319
BseAI	TCCGGA	1 cut(s)	319
BseBI	CCWGG	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	537
BseGI	GGATG	2 cut(s)	72, 529
BseLI	CCNNNNNNNGG	2 cut(s)	25, 319
BseMII	CTCAG	4 cut(s)	15, 27, 327, 522
BseRI	GAGGAG	5 cut(s)	41, 97, 353, 560, 563
BshNI	GGYRCC	1 cut(s)	213
BsiSI	CCGG	1 cut(s)	320
BslI	CCNNNNNNNGG	2 cut(s)	25, 319
BsmAI	GTCTC	1 cut(s)	414
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp13I	TCCGGA	1 cut(s)	319
Bsp143I	GATC	4 cut(s)	204, 220, 322, 384
BspCNI	CTCAG	4 cut(s)	16, 28, 328, 523
BspEI	TCCGGA	1 cut(s)	319
BspHI	TCATGA	1 cut(s)	487
BspLI	GGNNCC	2 cut(s)	215, 324
BspPI	GGATC	2 cut(s)	317, 330
BspT107I	GGYRCC	1 cut(s)	213
BssECI	CCNNGG	1 cut(s)	537
BssMI	GATC	4 cut(s)	204, 220, 322, 384
BssNI	GRCGYC	1 cut(s)	214
Bst2UI	CCWGG	1 cut(s)	255
Bst4CI	ACNGT	1 cut(s)	515
Bst6I	CTCTTC	4 cut(s)	549, 555, 561, 567
BstACI	GRCGYC	1 cut(s)	214
BstDEI	CTNAG	4 cut(s)	24, 36, 336, 531
BstENI	CCTNNNNNAGG	1 cut(s)	23
BstF5I	GGATG	2 cut(s)	72, 529
BstH2I	RGCGCY	2 cut(s)	217, 467
BstHHI	GCGC	2 cut(s)	216, 466
BstKTI	GATC	4 cut(s)	207, 223, 325, 387
BstMAI	GTCTC	1 cut(s)	414
BstMBI	GATC	4 cut(s)	204, 220, 322, 384
BstNI	CCWGG	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	253
BstV2I	GAAGAC	1 cut(s)	504
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
BtgZI	GCGATG	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	72, 529
BtsIMutI	CAGTG	1 cut(s)	333
CciI	TCATGA	1 cut(s)	487
CfoI	GCGC	2 cut(s)	216, 466
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	5 cut(s)	182, 218, 437, 447, 488
CviJI	RGCY	8 cut(s)	118, 228, 241, 253, 294, 312, 332, 380
CviKI_1	RGCY	8 cut(s)	118, 228, 241, 253, 294, 312, 332, 380
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	4 cut(s)	24, 36, 336, 531
DinI	GGCGCC	1 cut(s)	215
DpnI	GATC	4 cut(s)	206, 222, 324, 386
DpnII	GATC	4 cut(s)	204, 220, 322, 384
Eam1104I	CTCTTC	4 cut(s)	549, 555, 561, 567
EarI	CTCTTC	4 cut(s)	549, 555, 561, 567
Eco24I	GRGCYC	1 cut(s)	382
Eco57I	CTGAAG	1 cut(s)	292
EcoNI	CCTNNNNNAGG	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	253
EcoT38I	GRGCYC	1 cut(s)	382
EgeI	GGCGCC	1 cut(s)	215
EheI	GGCGCC	1 cut(s)	215
FaeI	CATG	5 cut(s)	185, 221, 440, 450, 491
FatI	CATG	5 cut(s)	181, 217, 436, 446, 487
FbaI	TGATCA	1 cut(s)	220
FokI	GGATG	2 cut(s)	59, 536
FriOI	GRGCYC	1 cut(s)	382
GlaI	GCGC	2 cut(s)	215, 465
GsuI	CTGGAG	1 cut(s)	140
HaeII	RGCGCY	2 cut(s)	217, 467
HapII	CCGG	1 cut(s)	320
HhaI	GCGC	2 cut(s)	216, 466
Hin1I	GRCGYC	1 cut(s)	214
Hin1II	CATG	5 cut(s)	185, 221, 440, 450, 491
Hin6I	GCGC	2 cut(s)	214, 464
HinP1I	GCGC	2 cut(s)	214, 464
HindIII	AAGCTT	3 cut(s)	226, 239, 292
HinfI	GANTC	3 cut(s)	155, 527, 533
HpaII	CCGG	1 cut(s)	320
Hpy166II	GTNNAC	1 cut(s)	453
Hpy188I	TCNGA	5 cut(s)	202, 419, 523, 532, 538
Hpy188III	TCNNGA	2 cut(s)	320, 488
Hpy8I	GTNNAC	1 cut(s)	453
Hpy99I	CGWCG	1 cut(s)	318
HpyAV	CCTTC	1 cut(s)	41
HpyCH4III	ACNGT	1 cut(s)	515
HpyCH4IV	ACGT	1 cut(s)	97
HpyF3I	CTNAG	4 cut(s)	24, 36, 336, 531
HpySE526I	ACGT	1 cut(s)	97
Hsp92I	GRCGYC	1 cut(s)	214
Hsp92II	CATG	5 cut(s)	185, 221, 440, 450, 491
HspAI	GCGC	2 cut(s)	214, 464
KasI	GGCGCC	1 cut(s)	213
Kpn2I	TCCGGA	1 cut(s)	319
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	4 cut(s)	204, 220, 322, 384
LpnPI	CCDG	7 cut(s)	104, 176, 240, 267, 333, 353, 395
MaeII	ACGT	1 cut(s)	97
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	4 cut(s)	206, 222, 324, 386
MboI	GATC	4 cut(s)	204, 220, 322, 384
MfeI	CAATTG	1 cut(s)	208
MflI	RGATCY	1 cut(s)	322
MhlI	GDGCHC	1 cut(s)	382
MluCI	AATT	3 cut(s)	173, 208, 426
Mly113I	GGCGCC	1 cut(s)	214
MlyI	GAGTC	2 cut(s)	536, 542
MmeI	TCCRAC	1 cut(s)	80
MroI	TCCGGA	1 cut(s)	319
MseI	TTAA	1 cut(s)	300
MspI	CCGG	1 cut(s)	320
MspR9I	CCNGG	1 cut(s)	255
MunI	CAATTG	1 cut(s)	208
MvaI	CCWGG	1 cut(s)	255
NarI	GGCGCC	1 cut(s)	214
NdeII	GATC	4 cut(s)	204, 220, 322, 384
NlaIII	CATG	5 cut(s)	185, 221, 440, 450, 491
NlaIV	GGNNCC	2 cut(s)	215, 324
NmuCI	GTSAC	1 cut(s)	91
PagI	TCATGA	1 cut(s)	487
PfeI	GAWTC	1 cut(s)	155
PleI	GAGTC	2 cut(s)	535, 541
PluTI	GGCGCC	1 cut(s)	217
PpsI	GAGTC	2 cut(s)	535, 541
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	2 cut(s)	215, 324
PsuI	RGATCY	1 cut(s)	322
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SaqAI	TTAA	1 cut(s)	300
Sau3AI	GATC	4 cut(s)	204, 220, 322, 384
SchI	GAGTC	2 cut(s)	536, 542
ScrFI	CCNGG	1 cut(s)	255
SduI	GDGCHC	1 cut(s)	382
SetI	ASST	8 cut(s)	52, 66, 89, 100, 120, 230, 243, 296
SfoI	GGCGCC	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	327
SmoI	CTYRAG	1 cut(s)	327
Sse9I	AATT	3 cut(s)	173, 208, 426
SspDI	GGCGCC	1 cut(s)	213
StyD4I	CCNGG	1 cut(s)	253
TaaI	ACNGT	1 cut(s)	515
TaiI	ACGT	1 cut(s)	100
TaqI	TCGA	1 cut(s)	114
TasI	AATT	3 cut(s)	173, 208, 426
TfiI	GAWTC	1 cut(s)	155
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	1 cut(s)	340
TseFI	GTSAC	1 cut(s)	91
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	5 cut(s)	17, 27, 60, 115, 476
TspRI	CASTG	1 cut(s)	340
XagI	CCTNNNNNAGG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.