Rh2CG421600

Belongs to the nucleosome assembly protein (NAP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000381
Physical Location & Seq
Reverse (-)
57621892 .. 57624679
2788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG421600.1

Sequence Viewer

Length: 672 bp
ATGAGTTCCTATGGATGTGGCTTCAATGGCAATGACCGCAATCTCGATTCCGAACGAAGAGATCCTGGTCTTACTGCTCAGAAGCAGAATAAGGATCGTATCTTCATAAGAAAGCCTTCCCTCACAACCAAGATCGTGAGGCGCATACAGGTTTTGAGGCGGTTGGAGATTATGAACCATGACGAACGCGCTCTCCAGTATCTGAACGATATCAAGTGGTCCAGGATACATGATCCTAAGGGATTCAGGCTGGAATTTTTATTTGATCCTAATCCTTACTTTCGAAACTCCGTCCTGACAAAAACATATTACATGGTTGAAGAACATGAACCGATATGGAGCAAGGAAATCGGGACGGAGATTGATTGGTATCCCGGGCAATGCTTGACAATCAATCCAAGAAAGGACCCAAAGAGTGCCAAGTCTTTGACTCCAGCTGATATTTGTTCCAGCTTCTTTACGTTTTTCAAACTTCCCCAACATGATGATTATACTGGTGCAGATATGGCTTCTATGTTCAAGACTAGGATAGAAAACGACCGTGAAATGGGGAACTGGAACTCTACCATAGGTAGGTGTGTGAAAATGGCCAATGATGAGAGTTGTGAGAGAGAGAGTGACTGGACTAATGCTGAGAGAGCAATGGGTAGGTTAACGCTGCGAGAGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAP

Protein Analysis

223

Amino Acids

26.25

Weight (kDa)

8.23

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 50 - 184 2.2e-29 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000381)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 189
AciI CCGC 2 cut(s) 37, 160
AclWI GGATC 4 cut(s) 56, 102, 227, 260
AcoI YGGCCR 1 cut(s) 588
AcsI RAATTY 1 cut(s) 254
AfiI CCNNNNNNNGG 2 cut(s) 547, 573
AgsI TTSAA 4 cut(s) 25, 320, 469, 520
AjnI CCWGG 2 cut(s) 64, 221
AloI GAACNNNNNNTCC 2 cut(s) 177, 209
AluBI AGCT 2 cut(s) 437, 453
AluI AGCT 2 cut(s) 437, 453
AlwI GGATC 4 cut(s) 56, 102, 227, 260
AlwNI CAGNNNCTG 1 cut(s) 202
Ama87I CYCGRG 1 cut(s) 374
AoxI GGCC 1 cut(s) 588
ApeKI GCWGC 1 cut(s) 658
ApoI RAATTY 1 cut(s) 254
Asp700I GAANNNNTTC 1 cut(s) 115
AspLEI GCGC 2 cut(s) 144, 191
AspS9I GGNCC 2 cut(s) 219, 406
AsuC2I CCSGG 2 cut(s) 375, 376
AsuII TTCGAA 1 cut(s) 283
AvaI CYCGRG 1 cut(s) 374
AvaII GGWCC 2 cut(s) 219, 406
AxyI CCTNAGG 1 cut(s) 237
BalI TGGCCA 1 cut(s) 590
BbvI GCAGC 1 cut(s) 645
BcgI CGANNNNNNTGC 2 cut(s) 331, 365
BciT130I CCWGG 2 cut(s) 66, 223
BciVI GTATCC 2 cut(s) 219, 381
BcnI CCSGG 2 cut(s) 375, 376
BfaI CTAG 1 cut(s) 525
BfuI GTATCC 2 cut(s) 219, 381
BisI GCNGC 1 cut(s) 659
BlsI GCNGC 1 cut(s) 660
Bme1390I CCNGG 4 cut(s) 66, 223, 375, 376
Bme18I GGWCC 2 cut(s) 219, 406
BmeT110I CYCGRG 1 cut(s) 374
BmgT120I GGNCC 2 cut(s) 219, 406
BmiI GGNNCC 1 cut(s) 408
BmrFI CCNGG 4 cut(s) 66, 223, 375, 376
BpmI CTGGAG 2 cut(s) 179, 417
Bpu14I TTCGAA 1 cut(s) 283
BpuMI CCSGG 2 cut(s) 375, 376
BsaBI GATNNNNATC 2 cut(s) 270, 369
BsaJI CCNNGG 1 cut(s) 374
BsaXI ACNNNNNCTCC 2 cut(s) 177, 207
Bsc4I CCNNNNNNNGG 2 cut(s) 547, 573
Bse1I ACTGG 4 cut(s) 196, 499, 560, 626
Bse21I CCTNAGG 1 cut(s) 237
Bse3DI GCAATG 3 cut(s) 37, 386, 648
Bse8I GATNNNNATC 2 cut(s) 270, 369
BseBI CCWGG 2 cut(s) 66, 223
BseDI CCNNGG 1 cut(s) 374
BseGI GGATG 1 cut(s) 20
BseJI GATNNNNATC 2 cut(s) 270, 369
BseLI CCNNNNNNNGG 2 cut(s) 547, 573
BseMI GCAATG 3 cut(s) 37, 386, 648
BseMII CTCAG 2 cut(s) 92, 624
BseNI ACTGG 4 cut(s) 196, 499, 560, 626
BseXI GCAGC 1 cut(s) 645
BsgI GTGCAG 1 cut(s) 519
Bsh1236I CGCG 1 cut(s) 189
Bsh1285I CGRYCG 1 cut(s) 541
BshFI GGCC 1 cut(s) 590
BsiEI CGRYCG 1 cut(s) 541
BsiHKCI CYCGRG 1 cut(s) 374
BsiSI CCGG 1 cut(s) 375
BslFI GGGAC 1 cut(s) 367
BslI CCNNNNNNNGG 2 cut(s) 547, 573
BsmFI GGGAC 1 cut(s) 367
BsnI GGCC 1 cut(s) 590
BsoBI CYCGRG 1 cut(s) 374
Bsp119I TTCGAA 1 cut(s) 283
Bsp143I GATC 5 cut(s) 61, 94, 132, 232, 265
BspACI CCGC 2 cut(s) 37, 160
BspANI GGCC 1 cut(s) 590
BspCNI CTCAG 2 cut(s) 91, 625
BspFNI CGCG 1 cut(s) 189
BspLI GGNNCC 1 cut(s) 408
BspPI GGATC 4 cut(s) 56, 102, 227, 260
BspT104I TTCGAA 1 cut(s) 283
BsrDI GCAATG 3 cut(s) 37, 386, 648
BsrI ACTGG 4 cut(s) 196, 499, 560, 626
BssECI CCNNGG 1 cut(s) 374
BssMI GATC 5 cut(s) 61, 94, 132, 232, 265
Bst2UI CCWGG 2 cut(s) 66, 223
Bst4CI ACNGT 1 cut(s) 542
Bst6I CTCTTC 1 cut(s) 52
BstBI TTCGAA 1 cut(s) 283
BstDEI CTNAG 3 cut(s) 78, 237, 633
BstF5I GGATG 1 cut(s) 20
BstFNI CGCG 1 cut(s) 189
BstHHI GCGC 2 cut(s) 144, 191
BstKTI GATC 5 cut(s) 64, 97, 135, 235, 268
BstMBI GATC 5 cut(s) 61, 94, 132, 232, 265
BstMCI CGRYCG 1 cut(s) 541
BstMWI GCNNNNNNNGC 5 cut(s) 27, 36, 506, 638, 664
BstNI CCWGG 2 cut(s) 66, 223
BstSCI CCNGG 4 cut(s) 64, 221, 373, 374
BstUI CGCG 1 cut(s) 189
BstV1I GCAGC 1 cut(s) 645
BstX2I RGATCY 1 cut(s) 61
BstYI RGATCY 1 cut(s) 61
Bsu36I CCTNAGG 1 cut(s) 237
BsuI GTATCC 2 cut(s) 219, 381
BsuRI GGCC 1 cut(s) 590
BtsCI GGATG 1 cut(s) 20
CaiI CAGNNNCTG 1 cut(s) 202
CfoI GCGC 2 cut(s) 144, 191
Cfr13I GGNCC 2 cut(s) 219, 406
Cfr9I CCCGGG 1 cut(s) 374
CviAII CATG 5 cut(s) 179, 230, 313, 326, 482
CviJI RGCY 7 cut(s) 21, 115, 250, 437, 453, 509, 590
CviKI_1 RGCY 7 cut(s) 21, 115, 250, 437, 453, 509, 590
DdeI CTNAG 3 cut(s) 78, 237, 633
DpnI GATC 5 cut(s) 63, 96, 134, 234, 267
DpnII GATC 5 cut(s) 61, 94, 132, 232, 265
EaeI YGGCCR 1 cut(s) 588
Eam1104I CTCTTC 1 cut(s) 52
EarI CTCTTC 1 cut(s) 52
Eco32I GATATC 1 cut(s) 211
Eco47I GGWCC 2 cut(s) 219, 406
Eco81I CCTNAGG 1 cut(s) 237
Eco88I CYCGRG 1 cut(s) 374
EcoO109I RGGNCCY 1 cut(s) 406
EcoRII CCWGG 2 cut(s) 64, 221
EcoRV GATATC 1 cut(s) 211
FaeI CATG 5 cut(s) 182, 233, 316, 329, 485
FalI AAGNNNNNCTT 2 cut(s) 100, 132
FaqI GGGAC 1 cut(s) 367
FatI CATG 5 cut(s) 178, 229, 312, 325, 481
Fnu4HI GCNGC 1 cut(s) 659
FokI GGATG 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 659
FspBI CTAG 1 cut(s) 525
GlaI GCGC 2 cut(s) 143, 190
GluI GCNGC 1 cut(s) 659
GsuI CTGGAG 2 cut(s) 179, 417
HaeIII GGCC 1 cut(s) 590
HapII CCGG 1 cut(s) 375
HhaI GCGC 2 cut(s) 144, 191
Hin1II CATG 5 cut(s) 182, 233, 316, 329, 485
Hin6I GCGC 2 cut(s) 142, 189
HinP1I GCGC 2 cut(s) 142, 189
HincII GTYRAC 1 cut(s) 654
HindII GTYRAC 1 cut(s) 654
HinfI GANTC 3 cut(s) 47, 243, 430
HpaI GTTAAC 1 cut(s) 654
HpaII CCGG 1 cut(s) 375
Hpy166II GTNNAC 1 cut(s) 654
Hpy188I TCNGA 3 cut(s) 52, 81, 204
Hpy188III TCNNGA 5 cut(s) 44, 136, 295, 352, 520
Hpy8I GTNNAC 1 cut(s) 654
HpyAV CCTTC 1 cut(s) 126
HpyCH4III ACNGT 1 cut(s) 542
HpyCH4IV ACGT 1 cut(s) 461
HpyCH4V TGCA 1 cut(s) 500
HpyF10VI GCNNNNNNNGC 5 cut(s) 27, 36, 506, 638, 664
HpyF3I CTNAG 3 cut(s) 78, 237, 633
HpySE526I ACGT 1 cut(s) 461
Hsp92II CATG 5 cut(s) 182, 233, 316, 329, 485
HspAI GCGC 2 cut(s) 142, 189
KspAI GTTAAC 1 cut(s) 654
Kzo9I GATC 5 cut(s) 61, 94, 132, 232, 265
LmnI GCTCC 1 cut(s) 339
Lsp1109I GCAGC 1 cut(s) 645
MaeI CTAG 1 cut(s) 525
MaeII ACGT 1 cut(s) 461
MaeIII GTNAC 1 cut(s) 617
MalI GATC 5 cut(s) 63, 96, 134, 234, 267
MboI GATC 5 cut(s) 61, 94, 132, 232, 265
MboII GAAGA 3 cut(s) 69, 94, 332
MflI RGATCY 1 cut(s) 61
MlsI TGGCCA 1 cut(s) 590
MluCI AATT 1 cut(s) 254
MluNI TGGCCA 1 cut(s) 590
MlyI GAGTC 1 cut(s) 424
MmeI TCCRAC 1 cut(s) 144
MnlI CCTC 3 cut(s) 131, 132, 150
Mox20I TGGCCA 1 cut(s) 590
MroXI GAANNNNTTC 1 cut(s) 115
MscI TGGCCA 1 cut(s) 590
MseI TTAA 1 cut(s) 653
Msp20I TGGCCA 1 cut(s) 590
MspA1I CMGCKG 1 cut(s) 437
MspI CCGG 1 cut(s) 375
MspR9I CCNGG 4 cut(s) 66, 223, 375, 376
MvaI CCWGG 2 cut(s) 66, 223
MvnI CGCG 1 cut(s) 189
MwoI GCNNNNNNNGC 5 cut(s) 27, 36, 506, 638, 664
NciI CCSGG 2 cut(s) 375, 376
NdeII GATC 5 cut(s) 61, 94, 132, 232, 265
NlaIII CATG 5 cut(s) 182, 233, 316, 329, 485
NlaIV GGNNCC 1 cut(s) 408
NmuCI GTSAC 1 cut(s) 617
NspV TTCGAA 1 cut(s) 283
PdmI GAANNNNTTC 1 cut(s) 115
PfeI GAWTC 2 cut(s) 47, 243
PfoI TCCNGGA 1 cut(s) 221
PkrI GCNGC 1 cut(s) 660
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
PpuMI RGGWCCY 1 cut(s) 406
Psp5II RGGWCCY 1 cut(s) 406
Psp6I CCWGG 2 cut(s) 64, 221
PspGI CCWGG 2 cut(s) 64, 221
PspN4I GGNNCC 1 cut(s) 408
PspPI GGNCC 2 cut(s) 219, 406
PspPPI RGGWCCY 1 cut(s) 406
PstNI CAGNNNCTG 1 cut(s) 202
PsuI RGATCY 1 cut(s) 61
PvuII CAGCTG 1 cut(s) 437
SaqAI TTAA 1 cut(s) 653
SatI GCNGC 1 cut(s) 659
Sau3AI GATC 5 cut(s) 61, 94, 132, 232, 265
Sau96I GGNCC 2 cut(s) 219, 406
SchI GAGTC 1 cut(s) 424
ScrFI CCNGG 4 cut(s) 66, 223, 375, 376
SetI ASST 7 cut(s) 153, 439, 455, 464, 574, 578, 653
SfuI TTCGAA 1 cut(s) 283
SinI GGWCC 2 cut(s) 219, 406
SmaI CCCGGG 1 cut(s) 376
Sse9I AATT 1 cut(s) 254
SsiI CCGC 2 cut(s) 37, 160
SspMI CTAG 1 cut(s) 525
StyD4I CCNGG 4 cut(s) 64, 221, 373, 374
TaaI ACNGT 1 cut(s) 542
TaiI ACGT 1 cut(s) 464
TaqI TCGA 2 cut(s) 45, 283
TasI AATT 1 cut(s) 254
TfiI GAWTC 2 cut(s) 47, 243
Tru1I TTAA 1 cut(s) 653
Tru9I TTAA 1 cut(s) 653
TseFI GTSAC 1 cut(s) 617
TseI GCWGC 1 cut(s) 658
Tsp45I GTSAC 1 cut(s) 617
TspDTI ATGAA 3 cut(s) 94, 188, 342
TspGWI ACGGA 2 cut(s) 280, 371
TspMI CCCGGG 1 cut(s) 374
VpaK11BI GGWCC 2 cut(s) 219, 406
XapI RAATTY 1 cut(s) 254
XmaI CCCGGG 1 cut(s) 374
XmnI GAANNNNTTC 1 cut(s) 115
XspI CTAG 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.