Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Reverse (-)

18343676 .. 18345164

Gene Structure 1489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g24290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGTCTGTGGCTTTGGGGAGCCAACATGATGAGTTGGAAAAGAAGTTTTTCGAAGAGAGGGTTGCATTGGAAGCAAAATACCAGAAGCTCTATGAACCTCTCTACAGTAAAAGGTACGAAATTGGCAATGGTGTAACCGAAGTTGAAGGAGTTAATCCTGAATCTGCATTGGACCAAGGAGATAATGCCACCGAAGAGAAAGGGGTGCCGGATTTCTGGCTCACGGCAATGAAGACCAATGAAGTTCTTTCTGAGGAGCGTGATGAAGGGGCTCTGAAGTACCTCAAGGATATCAAGTGGTCTAGGATAGACGAACCAAAAGGATTCAAGCTTGAGTTTTTCTTCAATGCCAATTCTTATTTCAAAAATTATGTACTGACAAAAACGTATCACATGATTGATGACGATGAACCTATTTTGGAGAAGGCAATTGGGACGGAGATTGATTGGTATCCTGGGAAGAGCTTGACGCAGAAGATCTTGAAGAAGAAGCCAAGAAAGGGATCAAAGAATGCTAAACCCATAACTAAAACTGAAGACTGTGAAAGCTTCTTTAACTTCTTCAACCCTCTTGAGATACCTGATACTGATGATGGATTTGATGAGGAAACTGCTGAAGAACTTCACAGTCAGATGGAGCAGGATTACGACATTGGGTACGTGGTGGTATTCTTTTACTTATGTCTAATGAATTCACTCTGTTTACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

237

Amino Acids

27.39

Weight (kDa)

4.64

Isoelectric Point (pI)

31.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	6 - 221	1.5e-66	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	205
AclWI	GGATC	1 cut(s)	511
AcsI	RAATTY	1 cut(s)	691
AcuI	CTGAAG	3 cut(s)	296, 555, 636
AfaI	GTAC	4 cut(s)	116, 281, 375, 659
AfiI	CCNNNNNNNGG	1 cut(s)	500
AgsI	TTSAA	6 cut(s)	146, 328, 346, 364, 484, 565
AjnI	CCWGG	1 cut(s)	454
AjuI	GAANNNNNNNTTGG	2 cut(s)	344, 376
AluBI	AGCT	4 cut(s)	88, 331, 465, 549
AluI	AGCT	4 cut(s)	88, 331, 465, 549
AlwI	GGATC	1 cut(s)	511
ApoI	RAATTY	1 cut(s)	691
Asp700I	GAANNNNTTC	2 cut(s)	47, 621
AspS9I	GGNCC	1 cut(s)	172
AsuII	TTCGAA	1 cut(s)	51
AvaII	GGWCC	1 cut(s)	172
BanI	GGYRCC	1 cut(s)	205
BanII	GRGCYC	1 cut(s)	274
BbsI	GAAGAC	2 cut(s)	239, 543
BccI	CCATC	2 cut(s)	587, 628
BceAI	ACGGC	1 cut(s)	240
BciT130I	CCWGG	1 cut(s)	456
BciVI	GTATCC	1 cut(s)	462
BfaI	CTAG	1 cut(s)	303
BfmI	CTRYAG	1 cut(s)	103
BfuI	GTATCC	1 cut(s)	462
BglII	AGATCT	1 cut(s)	477
Bme1390I	CCNGG	1 cut(s)	456
Bme18I	GGWCC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	172
BmiI	GGNNCC	2 cut(s)	20, 207
BmrFI	CCNGG	1 cut(s)	456
BpiI	GAAGAC	2 cut(s)	239, 543
Bpu14I	TTCGAA	1 cut(s)	51
BpuEI	CTTGAG	3 cut(s)	269, 353, 593
BsaAI	YACGTR	1 cut(s)	661
BsaBI	GATNNNNATC	1 cut(s)	450
BsaJI	CCNNGG	2 cut(s)	175, 455
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
Bse3DI	GCAATG	2 cut(s)	133, 234
Bse8I	GATNNNNATC	1 cut(s)	450
BseBI	CCWGG	1 cut(s)	456
BseDI	CCNNGG	2 cut(s)	175, 455
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseMI	GCAATG	2 cut(s)	133, 234
BseMII	CTCAG	1 cut(s)	243
BseRI	GAGGAG	1 cut(s)	269
BshNI	GGYRCC	1 cut(s)	205
BsiSI	CCGG	1 cut(s)	209
BslFI	GGGAC	1 cut(s)	448
BslI	CCNNNNNNNGG	1 cut(s)	500
BsmFI	GGGAC	1 cut(s)	448
BsmI	GAATGC	1 cut(s)	517
Bsp119I	TTCGAA	1 cut(s)	51
Bsp1286I	GDGCHC	1 cut(s)	274
Bsp143I	GATC	2 cut(s)	477, 503
BspCNI	CTCAG	1 cut(s)	244
BspLI	GGNNCC	2 cut(s)	20, 207
BspPI	GGATC	1 cut(s)	511
BspQI	GCTCTTC	1 cut(s)	455
BspT104I	TTCGAA	1 cut(s)	51
BspT107I	GGYRCC	1 cut(s)	205
BsrDI	GCAATG	2 cut(s)	133, 234
BssECI	CCNNGG	2 cut(s)	175, 455
BssMI	GATC	2 cut(s)	477, 503
BssT1I	CCWWGG	1 cut(s)	175
Bst2UI	CCWGG	1 cut(s)	456
Bst4CI	ACNGT	4 cut(s)	107, 542, 629, 708
Bst6I	CTCTTC	3 cut(s)	48, 189, 455
BstBAI	YACGTR	1 cut(s)	661
BstBI	TTCGAA	1 cut(s)	51
BstDEI	CTNAG	1 cut(s)	252
BstKTI	GATC	2 cut(s)	480, 506
BstMBI	GATC	2 cut(s)	477, 503
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstNI	CCWGG	1 cut(s)	456
BstSCI	CCNGG	1 cut(s)	454
BstSFI	CTRYAG	1 cut(s)	103
BstV2I	GAAGAC	2 cut(s)	239, 543
BstX2I	RGATCY	1 cut(s)	477
BstYI	RGATCY	1 cut(s)	477
BsuI	GTATCC	1 cut(s)	462
Cfr13I	GGNCC	1 cut(s)	172
CseI	GACGC	1 cut(s)	478
Csp6I	GTAC	4 cut(s)	115, 280, 374, 658
CviAII	CATG	2 cut(s)	26, 394
CviJI	RGCY	9 cut(s)	11, 21, 88, 220, 272, 331, 465, 493, 549
CviKI_1	RGCY	9 cut(s)	11, 21, 88, 220, 272, 331, 465, 493, 549
CviQI	GTAC	4 cut(s)	115, 280, 374, 658
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	2 cut(s)	479, 505
DpnII	GATC	2 cut(s)	477, 503
Eam1104I	CTCTTC	3 cut(s)	48, 189, 455
EarI	CTCTTC	3 cut(s)	48, 189, 455
Eco130I	CCWWGG	1 cut(s)	175
Eco24I	GRGCYC	1 cut(s)	274
Eco32I	GATATC	1 cut(s)	292
Eco47I	GGWCC	1 cut(s)	172
Eco57I	CTGAAG	3 cut(s)	296, 555, 636
EcoRI	GAATTC	1 cut(s)	691
EcoRII	CCWGG	1 cut(s)	454
EcoRV	GATATC	1 cut(s)	292
EcoT14I	CCWWGG	1 cut(s)	175
EcoT38I	GRGCYC	1 cut(s)	274
ErhI	CCWWGG	1 cut(s)	175
FaeI	CATG	2 cut(s)	29, 397
FaiI	YATR	6 cut(s)	27, 93, 372, 395, 524, 682
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	2 cut(s)	25, 393
FriOI	GRGCYC	1 cut(s)	274
FspBI	CTAG	1 cut(s)	303
HapII	CCGG	1 cut(s)	209
HgaI	GACGC	1 cut(s)	478
Hin1II	CATG	2 cut(s)	29, 397
HindIII	AAGCTT	2 cut(s)	329, 547
HinfI	GANTC	2 cut(s)	161, 324
HpaII	CCGG	1 cut(s)	209
Hpy166II	GTNNAC	1 cut(s)	704
Hpy188I	TCNGA	3 cut(s)	253, 276, 633
Hpy188III	TCNNGA	3 cut(s)	158, 481, 572
Hpy8I	GTNNAC	1 cut(s)	704
HpyAV	CCTTC	3 cut(s)	140, 260, 418
HpyCH4III	ACNGT	4 cut(s)	107, 542, 629, 708
HpyCH4IV	ACGT	2 cut(s)	386, 660
HpyCH4V	TGCA	2 cut(s)	65, 167
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	2 cut(s)	386, 660
Hsp92II	CATG	2 cut(s)	29, 397
Kzo9I	GATC	2 cut(s)	477, 503
LguI	GCTCTTC	1 cut(s)	455
LmnI	GCTCC	3 cut(s)	18, 256, 637
LpnPI	CCDG	8 cut(s)	95, 171, 202, 222, 441, 468, 594, 626
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	2 cut(s)	386, 660
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	2 cut(s)	479, 505
MboI	GATC	2 cut(s)	477, 503
MfeI	CAATTG	1 cut(s)	429
MflI	RGATCY	1 cut(s)	477
MhlI	GDGCHC	1 cut(s)	274
MluCI	AATT	5 cut(s)	120, 352, 367, 429, 691
MmeI	TCCRAC	1 cut(s)	15
MnlI	CCTC	6 cut(s)	51, 108, 247, 293, 579, 598
MroXI	GAANNNNTTC	2 cut(s)	47, 621
MseI	TTAA	2 cut(s)	153, 555
MslI	CAYNNNNRTG	1 cut(s)	227
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	456
MunI	CAATTG	1 cut(s)	429
Mva1269I	GAATGC	1 cut(s)	517
MvaI	CCWGG	1 cut(s)	456
MwoI	GCNNNNNNNGC	1 cut(s)	71
NdeII	GATC	2 cut(s)	477, 503
NlaIII	CATG	2 cut(s)	29, 397
NlaIV	GGNNCC	2 cut(s)	20, 207
NspV	TTCGAA	1 cut(s)	51
PciSI	GCTCTTC	1 cut(s)	455
PctI	GAATGC	1 cut(s)	517
PdmI	GAANNNNTTC	2 cut(s)	47, 621
PfeI	GAWTC	2 cut(s)	161, 324
Ppu21I	YACGTR	1 cut(s)	661
Psp6I	CCWGG	1 cut(s)	454
PspGI	CCWGG	1 cut(s)	454
PspN4I	GGNNCC	2 cut(s)	20, 207
PspPI	GGNCC	1 cut(s)	172
PsuI	RGATCY	1 cut(s)	477
RsaI	GTAC	4 cut(s)	116, 281, 375, 659
RsaNI	GTAC	4 cut(s)	115, 280, 374, 658
RseI	CAYNNNNRTG	1 cut(s)	227
SapI	GCTCTTC	1 cut(s)	455
SaqAI	TTAA	2 cut(s)	153, 555
Sau3AI	GATC	2 cut(s)	477, 503
Sau96I	GGNCC	1 cut(s)	172
ScrFI	CCNGG	1 cut(s)	456
SduI	GDGCHC	1 cut(s)	274
SfcI	CTRYAG	1 cut(s)	103
SfuI	TTCGAA	1 cut(s)	51
SinI	GGWCC	1 cut(s)	172
SmiMI	CAYNNNNRTG	1 cut(s)	227
SmlI	CTYRAG	3 cut(s)	284, 332, 572
SmoI	CTYRAG	3 cut(s)	284, 332, 572
Sse9I	AATT	5 cut(s)	120, 352, 367, 429, 691
SspMI	CTAG	1 cut(s)	303
StyD4I	CCNGG	1 cut(s)	454
StyI	CCWWGG	1 cut(s)	175
TaaI	ACNGT	4 cut(s)	107, 542, 629, 708
TaiI	ACGT	2 cut(s)	389, 663
TaqI	TCGA	1 cut(s)	51
TasI	AATT	5 cut(s)	120, 352, 367, 429, 691
TatI	WGTACW	1 cut(s)	373
TfiI	GAWTC	2 cut(s)	161, 324
Tru1I	TTAA	2 cut(s)	153, 555
Tru9I	TTAA	2 cut(s)	153, 555
TspDTI	ATGAA	6 cut(s)	108, 245, 255, 279, 423, 704
TspGWI	ACGGA	1 cut(s)	452
VpaK11BI	GGWCC	1 cut(s)	172
XapI	RAATTY	1 cut(s)	691
XmnI	GAANNNNTTC	2 cut(s)	47, 621
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.