Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Forward (+)

69856320 .. 69856640

Gene Structure 321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34013

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGATTGATGAAGATGAACCACAGAAAGCGGTAGGTACGGAGATTAAATGGTATCTGAAAGAATGTCTGACACAGAGGATCCTTAAGGAGAAGTCTAAGAAGCGATCGAAGATATCTAAGCCACTCACTAGAACTGAAACTTGTGAAAGTTTTTCAACTTCTTTTTTTCCACCTCAAGTCCCCAAGGATGATGCAGATATTGATGAAGGTGTTGCTGAGGAACTCAAGAACCTGAAGAAACAAGAATATGATATTGGGTCAACCATTCGATATAGGATTACCCCACATGCTGTTTCATGGTTTATGGGTGAGGCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

106

Amino Acids

12.24

Weight (kDa)

5.89

Isoelectric Point (pI)

41.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	2 - 104	1.4e-22	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	29
AclWI	GGATC	2 cut(s)	73, 86
AcuI	CTGAAG	1 cut(s)	254
AfaI	GTAC	1 cut(s)	37
AflII	CTTAAG	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	156
AjuI	GAANNNNNNNTTGG	2 cut(s)	237, 269
AlwI	GGATC	2 cut(s)	73, 86
AsuHPI	GGTGA	1 cut(s)	320
BamHI	GGATCC	1 cut(s)	78
BbvCI	CCTCAGC	1 cut(s)	216
BfaI	CTAG	1 cut(s)	129
BfrI	CTTAAG	1 cut(s)	83
BmiI	GGNNCC	1 cut(s)	80
BmsI	GCATC	1 cut(s)	181
Bpu10I	CCTNAGC	1 cut(s)	216
BpuEI	CTTGAG	2 cut(s)	159, 209
BsaJI	CCNNGG	1 cut(s)	183
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	1 cut(s)	193
BseMII	CTCAG	1 cut(s)	207
Bsh1285I	CGRYCG	1 cut(s)	107
BsiEI	CGRYCG	1 cut(s)	107
BslFI	GGGAC	1 cut(s)	164
BsmFI	GGGAC	1 cut(s)	164
Bsp143I	GATC	2 cut(s)	78, 104
BspACI	CCGC	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	208
BspLI	GGNNCC	1 cut(s)	80
BspPI	GGATC	2 cut(s)	73, 86
BspTI	CTTAAG	1 cut(s)	83
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	2 cut(s)	78, 104
BssT1I	CCWWGG	1 cut(s)	183
BstAFI	CTTAAG	1 cut(s)	83
BstDEI	CTNAG	4 cut(s)	96, 117, 216, 318
BstF5I	GGATG	1 cut(s)	193
BstKTI	GATC	2 cut(s)	81, 107
BstMBI	GATC	2 cut(s)	78, 104
BstMCI	CGRYCG	1 cut(s)	107
BstNSI	RCATGY	1 cut(s)	290
BstX2I	RGATCY	1 cut(s)	78
BstYI	RGATCY	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	193
Csp6I	GTAC	1 cut(s)	36
CviAII	CATG	2 cut(s)	287, 297
CviJI	RGCY	2 cut(s)	121, 314
CviKI_1	RGCY	2 cut(s)	121, 314
CviQI	GTAC	1 cut(s)	36
DdeI	CTNAG	4 cut(s)	96, 117, 216, 318
DpnI	GATC	2 cut(s)	80, 106
DpnII	GATC	2 cut(s)	78, 104
Eco130I	CCWWGG	1 cut(s)	183
Eco32I	GATATC	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	254
EcoRV	GATATC	1 cut(s)	114
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	2 cut(s)	290, 300
FaiI	YATR	5 cut(s)	249, 273, 288, 298, 305
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	2 cut(s)	286, 296
FokI	GGATG	1 cut(s)	200
FspBI	CTAG	1 cut(s)	129
Hin1II	CATG	2 cut(s)	290, 300
HincII	GTYRAC	1 cut(s)	261
HindII	GTYRAC	1 cut(s)	261
HphI	GGTGA	1 cut(s)	320
Hpy166II	GTNNAC	1 cut(s)	261
Hpy188I	TCNGA	2 cut(s)	57, 69
Hpy188III	TCNNGA	1 cut(s)	226
Hpy8I	GTNNAC	1 cut(s)	261
HpyAV	CCTTC	1 cut(s)	200
HpyCH4V	TGCA	1 cut(s)	194
HpyF3I	CTNAG	4 cut(s)	96, 117, 216, 318
Hsp92II	CATG	2 cut(s)	290, 300
Kzo9I	GATC	2 cut(s)	78, 104
LpnPI	CCDG	1 cut(s)	245
LweI	GCATC	1 cut(s)	181
MaeI	CTAG	1 cut(s)	129
MalI	GATC	2 cut(s)	80, 106
MboI	GATC	2 cut(s)	78, 104
MboII	GAAGA	3 cut(s)	23, 121, 247
MflI	RGATCY	1 cut(s)	78
MnlI	CCTC	4 cut(s)	69, 183, 211, 304
MseI	TTAA	2 cut(s)	45, 84
MspCI	CTTAAG	1 cut(s)	83
NdeII	GATC	2 cut(s)	78, 104
NlaIII	CATG	2 cut(s)	290, 300
NlaIV	GGNNCC	1 cut(s)	80
NspI	RCATGY	1 cut(s)	290
Ple19I	CGATCG	1 cut(s)	107
PspN4I	GGNNCC	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	78
PvuI	CGATCG	1 cut(s)	107
RsaI	GTAC	1 cut(s)	37
RsaNI	GTAC	1 cut(s)	36
SaqAI	TTAA	2 cut(s)	45, 84
Sau3AI	GATC	2 cut(s)	78, 104
SetI	ASST	4 cut(s)	37, 175, 211, 234
SfaNI	GCATC	1 cut(s)	181
SgeI	CNNG	9 cut(s)	141, 153, 188, 196, 238, 244, 254, 299, 309
SmlI	CTYRAG	3 cut(s)	83, 174, 224
SmoI	CTYRAG	3 cut(s)	83, 174, 224
SsiI	CCGC	1 cut(s)	29
SspMI	CTAG	1 cut(s)	129
StyI	CCWWGG	1 cut(s)	183
TaqI	TCGA	2 cut(s)	107, 268
Tru1I	TTAA	2 cut(s)	45, 84
Tru9I	TTAA	2 cut(s)	45, 84
TspDTI	ATGAA	4 cut(s)	24, 30, 219, 285
TspGWI	ACGGA	1 cut(s)	53
Vha464I	CTTAAG	1 cut(s)	83
XceI	RCATGY	1 cut(s)	290
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.